Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03240

Experiment: m.b. nitrite 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03230 and PGA1_c03240 are separated by 62 nucleotidesPGA1_c03240 and PGA1_c03250 overlap by 4 nucleotidesPGA1_c03250 and PGA1_c03260 overlap by 4 nucleotides PGA1_c03230: PGA1_c03230 - putative formate dehydrogenase, subunit FdhD, at 309,491 to 310,393 _c03230 PGA1_c03240: PGA1_c03240 - probable molybdopterin-guanine dinucleotide biosynthesis protein A, at 310,456 to 311,097 _c03240 PGA1_c03250: PGA1_c03250 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 311,094 to 311,585 _c03250 PGA1_c03260: PGA1_c03260 - hypothetical protein, at 311,582 to 312,394 _c03260 Position (kb) 310 311 312Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 309.459 kb on - strandat 309.460 kb on + strandat 309.460 kb on + strandat 309.468 kb on - strandat 309.468 kb on - strandat 309.468 kb on - strandat 309.468 kb on - strandat 309.515 kb on - strandat 309.520 kb on - strandat 309.739 kb on + strand, within PGA1_c03230at 309.749 kb on + strand, within PGA1_c03230at 309.782 kb on + strand, within PGA1_c03230at 309.827 kb on - strand, within PGA1_c03230at 309.874 kb on - strand, within PGA1_c03230at 309.927 kb on + strand, within PGA1_c03230at 309.927 kb on + strand, within PGA1_c03230at 309.929 kb on + strand, within PGA1_c03230at 309.929 kb on + strand, within PGA1_c03230at 309.937 kb on - strand, within PGA1_c03230at 309.937 kb on - strand, within PGA1_c03230at 309.937 kb on - strand, within PGA1_c03230at 309.986 kb on - strand, within PGA1_c03230at 309.990 kb on + strand, within PGA1_c03230at 309.990 kb on + strand, within PGA1_c03230at 309.998 kb on - strand, within PGA1_c03230at 309.998 kb on - strand, within PGA1_c03230at 310.026 kb on + strand, within PGA1_c03230at 310.045 kb on + strand, within PGA1_c03230at 310.069 kb on + strand, within PGA1_c03230at 310.153 kb on + strand, within PGA1_c03230at 310.158 kb on + strand, within PGA1_c03230at 310.166 kb on - strand, within PGA1_c03230at 310.299 kb on - strand, within PGA1_c03230at 310.348 kb on - strandat 310.440 kb on + strandat 310.639 kb on + strand, within PGA1_c03240at 310.675 kb on - strand, within PGA1_c03240at 310.707 kb on - strand, within PGA1_c03240at 310.721 kb on - strand, within PGA1_c03240at 310.811 kb on + strand, within PGA1_c03240at 310.816 kb on + strand, within PGA1_c03240at 310.922 kb on + strand, within PGA1_c03240at 310.971 kb on - strand, within PGA1_c03240at 310.981 kb on - strand, within PGA1_c03240at 310.990 kb on + strand, within PGA1_c03240at 310.998 kb on - strand, within PGA1_c03240at 311.024 kb on - strand, within PGA1_c03240at 311.024 kb on - strand, within PGA1_c03240at 311.049 kb on + strandat 311.057 kb on - strandat 311.076 kb on + strandat 311.099 kb on + strandat 311.099 kb on + strandat 311.107 kb on - strandat 311.107 kb on - strandat 311.107 kb on - strandat 311.107 kb on - strandat 311.107 kb on - strandat 311.109 kb on + strandat 311.124 kb on - strandat 311.179 kb on + strand, within PGA1_c03250at 311.208 kb on + strand, within PGA1_c03250at 311.221 kb on - strand, within PGA1_c03250at 311.270 kb on + strand, within PGA1_c03250at 311.331 kb on + strand, within PGA1_c03250at 311.376 kb on + strand, within PGA1_c03250at 311.411 kb on - strand, within PGA1_c03250at 311.411 kb on - strand, within PGA1_c03250at 311.420 kb on + strand, within PGA1_c03250at 311.422 kb on - strand, within PGA1_c03250at 311.452 kb on + strand, within PGA1_c03250at 311.499 kb on + strand, within PGA1_c03250at 311.508 kb on + strand, within PGA1_c03250at 311.537 kb on - strandat 311.598 kb on + strandat 311.617 kb on - strandat 311.630 kb on + strandat 311.637 kb on + strandat 311.637 kb on + strandat 311.668 kb on - strand, within PGA1_c03260at 311.707 kb on - strand, within PGA1_c03260at 311.757 kb on - strand, within PGA1_c03260at 311.841 kb on + strand, within PGA1_c03260at 311.871 kb on + strand, within PGA1_c03260at 311.871 kb on + strand, within PGA1_c03260at 311.871 kb on + strand, within PGA1_c03260at 311.913 kb on + strand, within PGA1_c03260at 311.952 kb on + strand, within PGA1_c03260at 311.962 kb on + strand, within PGA1_c03260at 311.975 kb on - strand, within PGA1_c03260at 311.984 kb on - strand, within PGA1_c03260at 311.990 kb on + strand, within PGA1_c03260at 311.998 kb on - strand, within PGA1_c03260at 312.016 kb on + strand, within PGA1_c03260at 312.048 kb on + strand, within PGA1_c03260at 312.050 kb on + strand, within PGA1_c03260at 312.050 kb on + strand, within PGA1_c03260at 312.050 kb on + strand, within PGA1_c03260at 312.050 kb on + strand, within PGA1_c03260at 312.056 kb on - strand, within PGA1_c03260at 312.058 kb on - strand, within PGA1_c03260

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM
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309,459 - -2.6
309,460 + +3.4
309,460 + +1.3
309,468 - -1.0
309,468 - +1.3
309,468 - -1.5
309,468 - +1.2
309,515 - +1.7
309,520 - +1.1
309,739 + PGA1_c03230 0.27 -1.5
309,749 + PGA1_c03230 0.29 +1.9
309,782 + PGA1_c03230 0.32 +1.5
309,827 - PGA1_c03230 0.37 -3.6
309,874 - PGA1_c03230 0.42 -1.1
309,927 + PGA1_c03230 0.48 +1.3
309,927 + PGA1_c03230 0.48 +0.4
309,929 + PGA1_c03230 0.49 -1.4
309,929 + PGA1_c03230 0.49 +1.3
309,937 - PGA1_c03230 0.49 +2.6
309,937 - PGA1_c03230 0.49 +0.4
309,937 - PGA1_c03230 0.49 +2.0
309,986 - PGA1_c03230 0.55 +1.3
309,990 + PGA1_c03230 0.55 +0.6
309,990 + PGA1_c03230 0.55 -1.7
309,998 - PGA1_c03230 0.56 +2.1
309,998 - PGA1_c03230 0.56 +0.6
310,026 + PGA1_c03230 0.59 -1.3
310,045 + PGA1_c03230 0.61 +0.5
310,069 + PGA1_c03230 0.64 +0.8
310,153 + PGA1_c03230 0.73 -2.2
310,158 + PGA1_c03230 0.74 +1.3
310,166 - PGA1_c03230 0.75 +0.9
310,299 - PGA1_c03230 0.89 +1.0
310,348 - +0.8
310,440 + -1.0
310,639 + PGA1_c03240 0.29 +2.3
310,675 - PGA1_c03240 0.34 +0.5
310,707 - PGA1_c03240 0.39 +2.1
310,721 - PGA1_c03240 0.41 -0.8
310,811 + PGA1_c03240 0.55 +2.0
310,816 + PGA1_c03240 0.56 -2.9
310,922 + PGA1_c03240 0.73 +1.7
310,971 - PGA1_c03240 0.80 -1.3
310,981 - PGA1_c03240 0.82 -1.0
310,990 + PGA1_c03240 0.83 +1.1
310,998 - PGA1_c03240 0.84 +0.5
311,024 - PGA1_c03240 0.88 +1.9
311,024 - PGA1_c03240 0.88 +0.8
311,049 + -0.7
311,057 - +0.2
311,076 + +0.9
311,099 + +1.2
311,099 + +1.0
311,107 - -0.2
311,107 - -0.4
311,107 - +2.0
311,107 - -2.9
311,107 - +1.4
311,109 + +1.1
311,124 - -0.3
311,179 + PGA1_c03250 0.17 -3.7
311,208 + PGA1_c03250 0.23 -2.3
311,221 - PGA1_c03250 0.26 -1.1
311,270 + PGA1_c03250 0.36 +1.3
311,331 + PGA1_c03250 0.48 -1.3
311,376 + PGA1_c03250 0.57 -0.1
311,411 - PGA1_c03250 0.64 -0.9
311,411 - PGA1_c03250 0.64 +1.3
311,420 + PGA1_c03250 0.66 -1.5
311,422 - PGA1_c03250 0.67 +1.1
311,452 + PGA1_c03250 0.73 -0.7
311,499 + PGA1_c03250 0.82 +0.4
311,508 + PGA1_c03250 0.84 -0.2
311,537 - +0.3
311,598 + +0.7
311,617 - -0.0
311,630 + -1.3
311,637 + +0.3
311,637 + +0.7
311,668 - PGA1_c03260 0.11 +0.3
311,707 - PGA1_c03260 0.15 +1.1
311,757 - PGA1_c03260 0.22 +0.5
311,841 + PGA1_c03260 0.32 -2.9
311,871 + PGA1_c03260 0.36 +0.8
311,871 + PGA1_c03260 0.36 -0.4
311,871 + PGA1_c03260 0.36 -0.3
311,913 + PGA1_c03260 0.41 +0.6
311,952 + PGA1_c03260 0.46 +0.3
311,962 + PGA1_c03260 0.47 +1.5
311,975 - PGA1_c03260 0.48 -1.6
311,984 - PGA1_c03260 0.49 -1.0
311,990 + PGA1_c03260 0.50 -1.0
311,998 - PGA1_c03260 0.51 -0.5
312,016 + PGA1_c03260 0.53 -0.5
312,048 + PGA1_c03260 0.57 +1.1
312,050 + PGA1_c03260 0.58 +0.3
312,050 + PGA1_c03260 0.58 -1.7
312,050 + PGA1_c03260 0.58 +0.7
312,050 + PGA1_c03260 0.58 +0.8
312,056 - PGA1_c03260 0.58 +1.7
312,058 - PGA1_c03260 0.59 -1.6

Or see this region's nucleotide sequence