Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c30240

Experiment: m.b. nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 6 mM
3,162,466	-		PGA1_c30230	0.69	+3.6
3,162,473	+		PGA1_c30230	0.69	-2.6
3,162,545	+		PGA1_c30230	0.73	-0.4
3,162,571	+		PGA1_c30230	0.75	-0.7
3,162,608	+		PGA1_c30230	0.77	-2.5
3,162,616	-		PGA1_c30230	0.77	-1.5
3,162,628	+		PGA1_c30230	0.78	-0.2
3,162,636	-		PGA1_c30230	0.78	-0.5
3,162,643	-		PGA1_c30230	0.78	-0.9
3,162,651	+		PGA1_c30230	0.79	-2.9
3,162,676	-		PGA1_c30230	0.80	+0.2
3,162,678	+		PGA1_c30230	0.80	-0.2
3,162,898	-				-1.1
3,162,898	-				+0.7
3,162,972	+				-1.7
3,162,993	+				-1.2
3,163,066	-				+0.1
3,163,098	+				+1.0
3,163,098	+				-2.4
3,163,106	-				-0.2
3,163,224	+				-0.3
3,163,224	+				-1.6
3,163,232	-				+0.9
3,163,431	-				+1.2
3,163,503	+				+1.1
3,163,608	-		PGA1_c30240	0.20	-0.3
3,163,608	-		PGA1_c30240	0.20	+1.2
3,163,739	-		PGA1_c30240	0.39	+0.0
3,163,752	+		PGA1_c30240	0.41	+0.5
3,163,771	-		PGA1_c30240	0.44	+1.4
3,163,783	+		PGA1_c30240	0.45	+0.1
3,163,783	+		PGA1_c30240	0.45	+1.3
3,163,791	-		PGA1_c30240	0.47	+0.8
3,163,809	+		PGA1_c30240	0.49	+1.2
3,163,809	+		PGA1_c30240	0.49	-1.3
3,163,809	+		PGA1_c30240	0.49	+1.8
3,163,809	+		PGA1_c30240	0.49	-1.1
3,163,809	+		PGA1_c30240	0.49	-2.8
3,163,809	+		PGA1_c30240	0.49	+0.3
3,163,840	+		PGA1_c30240	0.54	-0.0
3,163,840	+		PGA1_c30240	0.54	+1.3
3,163,863	+		PGA1_c30240	0.57	+0.0
3,163,863	+		PGA1_c30240	0.57	+1.9
3,163,871	-		PGA1_c30240	0.58	-0.1
3,163,871	-		PGA1_c30240	0.58	+2.8
3,163,912	+		PGA1_c30240	0.64	-0.3
3,163,922	+		PGA1_c30240	0.65	+1.3
3,163,955	+		PGA1_c30240	0.70	+2.0
3,163,955	+		PGA1_c30240	0.70	+1.3
3,163,999	+		PGA1_c30240	0.76	+0.1
3,163,999	+		PGA1_c30240	0.76	-0.9
3,163,999	+		PGA1_c30240	0.76	-2.9
3,163,999	+		PGA1_c30240	0.76	-0.3
3,163,999	+		PGA1_c30240	0.76	+1.1
3,163,999	+		PGA1_c30240	0.76	-0.9
3,163,999	+		PGA1_c30240	0.76	-1.3
3,163,999	+		PGA1_c30240	0.76	-0.4
3,163,999	+		PGA1_c30240	0.76	-1.7
3,164,007	-		PGA1_c30240	0.78	+0.1
3,164,007	-		PGA1_c30240	0.78	-2.6
3,164,007	-		PGA1_c30240	0.78	-0.3
3,164,007	-		PGA1_c30240	0.78	+0.1
3,164,007	-		PGA1_c30240	0.78	+0.1
3,164,007	-		PGA1_c30240	0.78	-0.1
3,164,007	-		PGA1_c30240	0.78	-0.9
3,164,007	-		PGA1_c30240	0.78	+2.5
3,164,017	-		PGA1_c30240	0.79	+0.7
3,164,052	-		PGA1_c30240	0.84	+0.1
3,164,084	+		PGA1_c30240	0.89	-1.2
3,164,090	+		PGA1_c30240	0.89	+1.1
3,164,100	+				+1.1
3,164,100	+				-1.2
3,164,108	-				+0.9
3,164,108	-				-2.4
3,164,108	-				+0.6
3,164,109	+				+0.8
3,164,121	+				+0.7
3,164,121	+				+2.1
3,164,121	+				+0.8
3,164,121	+				+1.3
3,164,121	+				-0.2
3,164,121	+				+0.9
3,164,129	-				-0.4
3,164,129	-				+1.2
3,164,323	+				-2.1
3,164,357	+		PGA1_c30250	0.13	+3.0
3,164,360	-		PGA1_c30250	0.14	+0.2
3,164,360	-		PGA1_c30250	0.14	-0.1
3,164,365	-		PGA1_c30250	0.14	+0.7
3,164,365	-		PGA1_c30250	0.14	+0.4
3,164,365	-		PGA1_c30250	0.14	-0.6
3,164,365	-		PGA1_c30250	0.14	-1.4
3,164,406	-		PGA1_c30250	0.22	-1.2
3,164,481	+		PGA1_c30250	0.36	+0.2
3,164,481	+		PGA1_c30250	0.36	-1.7
3,164,481	+		PGA1_c30250	0.36	+0.7
3,164,481	+		PGA1_c30250	0.36	-0.7
3,164,489	-		PGA1_c30250	0.37	+1.6
3,164,515	+		PGA1_c30250	0.42	-0.2
3,164,515	+		PGA1_c30250	0.42	+0.3
3,164,515	+		PGA1_c30250	0.42	-0.1
3,164,515	+		PGA1_c30250	0.42	-0.2
3,164,515	+		PGA1_c30250	0.42	+2.7
3,164,523	-		PGA1_c30250	0.43	+1.0
3,164,523	-		PGA1_c30250	0.43	+0.3
3,164,523	-		PGA1_c30250	0.43	-0.8
3,164,523	-		PGA1_c30250	0.43	+0.7
3,164,536	-		PGA1_c30250	0.45	-0.6
3,164,560	-		PGA1_c30250	0.50	+0.5
3,164,602	-		PGA1_c30250	0.57	-0.1
3,164,609	+		PGA1_c30250	0.59	+0.8
3,164,624	+		PGA1_c30250	0.61	-1.5
3,164,672	+		PGA1_c30250	0.70	-1.3
3,164,729	-		PGA1_c30250	0.80	+0.4
3,164,826	-				+0.1
3,164,831	-				-0.5
3,164,831	-				-0.8
3,164,845	+				-2.4
3,164,870	-				+0.5
3,164,927	-				-0.5
3,164,930	+				+0.2
3,164,959	-				-0.5
3,164,967	-				-0.9
3,164,967	-				+0.6
3,164,974	+				+1.3
3,164,974	+				+1.5
3,164,974	+				-3.8
3,164,974	-				-2.6
3,164,982	-				-0.3