Experiment: m.b. nitrite 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03020 and PGA1_c03030 are separated by 5 nucleotides PGA1_c03030 and PGA1_c03040 overlap by 4 nucleotides PGA1_c03040 and PGA1_c03050 are separated by 1 nucleotides PGA1_c03050 and PGA1_c03060 are separated by 3 nucleotides
PGA1_c03020: PGA1_c03020 - dihydroorotase PyrC, at 290,012 to 291,322
_c03020
PGA1_c03030: PGA1_c03030 - hypothetical protein, at 291,328 to 291,861
_c03030
PGA1_c03040: PGA1_c03040 - hypothetical protein, at 291,858 to 292,241
_c03040
PGA1_c03050: PGA1_c03050 - hypothetical protein, at 292,243 to 292,800
_c03050
PGA1_c03060: PGA1_c03060 - aspartate carbamoyltransferase PyrB, at 292,804 to 293,799
_c03060
Position (kb) 292
293 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 291.248 kb on + strand at 291.256 kb on - strand at 291.313 kb on - strand at 291.313 kb on - strand at 291.317 kb on + strand at 291.344 kb on + strand at 291.349 kb on + strand at 291.349 kb on + strand at 291.349 kb on + strand at 291.349 kb on + strand at 291.349 kb on + strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.370 kb on + strand at 291.374 kb on - strand at 291.425 kb on + strand, within PGA1_c03030 at 291.433 kb on - strand, within PGA1_c03030 at 291.487 kb on - strand, within PGA1_c03030 at 291.487 kb on - strand, within PGA1_c03030 at 291.511 kb on - strand, within PGA1_c03030 at 291.515 kb on + strand, within PGA1_c03030 at 291.523 kb on - strand, within PGA1_c03030 at 291.528 kb on + strand, within PGA1_c03030 at 291.576 kb on + strand, within PGA1_c03030 at 291.616 kb on + strand, within PGA1_c03030 at 291.616 kb on + strand, within PGA1_c03030 at 291.624 kb on - strand, within PGA1_c03030 at 291.650 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.720 kb on + strand, within PGA1_c03030 at 291.728 kb on - strand, within PGA1_c03030 at 291.728 kb on - strand, within PGA1_c03030 at 291.731 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.772 kb on + strand, within PGA1_c03030 at 291.772 kb on + strand, within PGA1_c03030 at 291.780 kb on - strand, within PGA1_c03030 at 291.780 kb on - strand, within PGA1_c03030 at 291.784 kb on + strand, within PGA1_c03030 at 291.806 kb on - strand, within PGA1_c03030 at 291.825 kb on + strand at 291.851 kb on + strand at 291.851 kb on + strand at 291.851 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.859 kb on - strand at 291.859 kb on - strand at 291.863 kb on + strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.893 kb on + strand at 291.898 kb on + strand, within PGA1_c03040 at 291.898 kb on + strand, within PGA1_c03040 at 291.906 kb on - strand, within PGA1_c03040 at 291.918 kb on - strand, within PGA1_c03040 at 291.924 kb on + strand, within PGA1_c03040 at 291.932 kb on + strand, within PGA1_c03040 at 291.940 kb on - strand, within PGA1_c03040 at 291.963 kb on - strand, within PGA1_c03040 at 291.968 kb on - strand, within PGA1_c03040 at 292.007 kb on - strand, within PGA1_c03040 at 292.063 kb on + strand, within PGA1_c03040 at 292.093 kb on - strand, within PGA1_c03040 at 292.093 kb on - strand, within PGA1_c03040 at 292.117 kb on + strand, within PGA1_c03040 at 292.117 kb on + strand, within PGA1_c03040 at 292.183 kb on + strand, within PGA1_c03040 at 292.214 kb on + strand at 292.239 kb on - strand at 292.273 kb on + strand at 292.276 kb on - strand at 292.276 kb on - strand at 292.330 kb on + strand, within PGA1_c03050 at 292.335 kb on + strand, within PGA1_c03050 at 292.335 kb on + strand, within PGA1_c03050 at 292.335 kb on + strand, within PGA1_c03050 at 292.338 kb on - strand, within PGA1_c03050 at 292.343 kb on - strand, within PGA1_c03050 at 292.365 kb on - strand, within PGA1_c03050 at 292.408 kb on + strand, within PGA1_c03050 at 292.416 kb on - strand, within PGA1_c03050 at 292.425 kb on + strand, within PGA1_c03050 at 292.426 kb on - strand, within PGA1_c03050 at 292.552 kb on + strand, within PGA1_c03050 at 292.602 kb on + strand, within PGA1_c03050 at 292.610 kb on - strand, within PGA1_c03050 at 292.653 kb on - strand, within PGA1_c03050 at 292.763 kb on - strand at 292.887 kb on + strand at 292.898 kb on + strand at 292.898 kb on + strand at 293.003 kb on + strand, within PGA1_c03060 at 293.191 kb on - strand, within PGA1_c03060 at 293.259 kb on + strand, within PGA1_c03060 at 293.259 kb on + strand, within PGA1_c03060 at 293.261 kb on + strand, within PGA1_c03060 at 293.272 kb on + strand, within PGA1_c03060 at 293.280 kb on - strand, within PGA1_c03060 at 293.350 kb on + strand, within PGA1_c03060 at 293.363 kb on - strand, within PGA1_c03060 at 293.419 kb on + strand, within PGA1_c03060 at 293.500 kb on - strand, within PGA1_c03060 at 293.535 kb on - strand, within PGA1_c03060 at 293.553 kb on - strand, within PGA1_c03060 at 293.623 kb on + strand, within PGA1_c03060 at 293.637 kb on - strand, within PGA1_c03060 at 293.641 kb on - strand, within PGA1_c03060 at 293.641 kb on - strand, within PGA1_c03060 at 293.643 kb on + strand, within PGA1_c03060 at 293.651 kb on - strand, within PGA1_c03060 at 293.676 kb on + strand, within PGA1_c03060 at 293.676 kb on + strand, within PGA1_c03060 at 293.679 kb on + strand, within PGA1_c03060 at 293.679 kb on + strand, within PGA1_c03060 at 293.679 kb on + strand, within PGA1_c03060 at 293.679 kb on + strand, within PGA1_c03060 at 293.679 kb on + strand, within PGA1_c03060 at 293.684 kb on - strand, within PGA1_c03060 at 293.687 kb on - strand, within PGA1_c03060 at 293.790 kb on - strand at 293.794 kb on + strand at 293.797 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM remove 291,248 + +1.6 291,256 - +2.2 291,313 - -0.8 291,313 - +3.7 291,317 + +1.3 291,344 + +1.0 291,349 + -1.4 291,349 + -1.0 291,349 + -3.7 291,349 + +0.3 291,349 + -0.7 291,357 - -0.7 291,357 - +1.7 291,357 - +1.3 291,357 - +0.2 291,357 - -0.3 291,357 - +1.6 291,357 - -0.0 291,357 - +0.6 291,357 - +0.9 291,357 - +1.3 291,370 + -1.0 291,374 - -0.3 291,425 + PGA1_c03030 0.18 +0.6 291,433 - PGA1_c03030 0.20 -0.6 291,487 - PGA1_c03030 0.30 +1.8 291,487 - PGA1_c03030 0.30 +2.0 291,511 - PGA1_c03030 0.34 +0.8 291,515 + PGA1_c03030 0.35 -0.7 291,523 - PGA1_c03030 0.37 +0.3 291,528 + PGA1_c03030 0.37 +0.5 291,576 + PGA1_c03030 0.46 +1.9 291,616 + PGA1_c03030 0.54 +0.6 291,616 + PGA1_c03030 0.54 +0.4 291,624 - PGA1_c03030 0.55 -0.8 291,650 + PGA1_c03030 0.60 +0.8 291,710 + PGA1_c03030 0.72 +1.2 291,710 + PGA1_c03030 0.72 +1.0 291,710 + PGA1_c03030 0.72 +0.0 291,710 + PGA1_c03030 0.72 +1.3 291,710 + PGA1_c03030 0.72 +1.0 291,710 + PGA1_c03030 0.72 -1.7 291,710 + PGA1_c03030 0.72 +0.3 291,710 + PGA1_c03030 0.72 +0.1 291,710 + PGA1_c03030 0.72 +0.0 291,710 + PGA1_c03030 0.72 +3.3 291,710 + PGA1_c03030 0.72 -1.7 291,718 - PGA1_c03030 0.73 -0.3 291,718 - PGA1_c03030 0.73 -1.8 291,718 - PGA1_c03030 0.73 +0.3 291,718 - PGA1_c03030 0.73 +2.2 291,718 - PGA1_c03030 0.73 +0.8 291,718 - PGA1_c03030 0.73 -0.0 291,720 + PGA1_c03030 0.73 +0.4 291,728 - PGA1_c03030 0.75 +0.7 291,728 - PGA1_c03030 0.75 +0.9 291,731 + PGA1_c03030 0.75 +1.2 291,752 + PGA1_c03030 0.79 +0.8 291,752 + PGA1_c03030 0.79 +1.1 291,752 + PGA1_c03030 0.79 -0.4 291,752 + PGA1_c03030 0.79 -2.1 291,752 + PGA1_c03030 0.79 -0.7 291,752 + PGA1_c03030 0.79 -1.2 291,760 - PGA1_c03030 0.81 +1.9 291,760 - PGA1_c03030 0.81 +0.9 291,760 - PGA1_c03030 0.81 +1.0 291,760 - PGA1_c03030 0.81 -0.1 291,760 - PGA1_c03030 0.81 +0.0 291,760 - PGA1_c03030 0.81 -2.8 291,760 - PGA1_c03030 0.81 -0.3 291,760 - PGA1_c03030 0.81 +1.2 291,760 - PGA1_c03030 0.81 -0.2 291,760 - PGA1_c03030 0.81 -2.8 291,760 - PGA1_c03030 0.81 +1.4 291,760 - PGA1_c03030 0.81 +0.6 291,760 - PGA1_c03030 0.81 -0.3 291,760 - PGA1_c03030 0.81 -0.6 291,762 + PGA1_c03030 0.81 -1.4 291,762 + PGA1_c03030 0.81 -0.3 291,762 + PGA1_c03030 0.81 -0.6 291,762 + PGA1_c03030 0.81 +1.8 291,762 + PGA1_c03030 0.81 +1.5 291,762 + PGA1_c03030 0.81 +1.9 291,762 + PGA1_c03030 0.81 +1.6 291,762 + PGA1_c03030 0.81 +0.5 291,770 - PGA1_c03030 0.83 -0.8 291,770 - PGA1_c03030 0.83 +0.3 291,770 - PGA1_c03030 0.83 +0.4 291,770 - PGA1_c03030 0.83 -1.0 291,770 - PGA1_c03030 0.83 -0.9 291,770 - PGA1_c03030 0.83 +0.0 291,772 + PGA1_c03030 0.83 -1.3 291,772 + PGA1_c03030 0.83 +1.3 291,780 - PGA1_c03030 0.85 -0.7 291,780 - PGA1_c03030 0.85 +0.1 291,784 + PGA1_c03030 0.85 +0.1 291,806 - PGA1_c03030 0.90 -0.4 291,825 + -1.0 291,851 + -0.7 291,851 + -0.3 291,851 + -0.7 291,856 + +1.6 291,856 + +0.5 291,856 + -0.6 291,856 + -1.5 291,856 + -1.9 291,856 + +0.7 291,859 - +0.7 291,859 - -0.2 291,863 + -1.3 291,864 - -1.0 291,864 - +0.8 291,864 - +2.3 291,864 - +0.1 291,864 - -0.5 291,864 - +1.7 291,864 - +1.3 291,864 - +0.1 291,864 - +0.7 291,864 - +1.0 291,893 + -0.1 291,898 + PGA1_c03040 0.10 -1.3 291,898 + PGA1_c03040 0.10 +0.9 291,906 - PGA1_c03040 0.12 -0.8 291,918 - PGA1_c03040 0.16 -0.6 291,924 + PGA1_c03040 0.17 -0.1 291,932 + PGA1_c03040 0.19 -1.5 291,940 - PGA1_c03040 0.21 -0.1 291,963 - PGA1_c03040 0.27 -0.7 291,968 - PGA1_c03040 0.29 +4.8 292,007 - PGA1_c03040 0.39 +1.6 292,063 + PGA1_c03040 0.53 -2.3 292,093 - PGA1_c03040 0.61 +0.9 292,093 - PGA1_c03040 0.61 -1.1 292,117 + PGA1_c03040 0.67 +0.8 292,117 + PGA1_c03040 0.67 -1.5 292,183 + PGA1_c03040 0.85 +0.3 292,214 + +1.8 292,239 - +1.6 292,273 + +1.5 292,276 - -1.2 292,276 - -0.3 292,330 + PGA1_c03050 0.16 -1.3 292,335 + PGA1_c03050 0.16 +0.4 292,335 + PGA1_c03050 0.16 +0.5 292,335 + PGA1_c03050 0.16 +0.3 292,338 - PGA1_c03050 0.17 -0.2 292,343 - PGA1_c03050 0.18 -0.1 292,365 - PGA1_c03050 0.22 +1.1 292,408 + PGA1_c03050 0.30 +1.2 292,416 - PGA1_c03050 0.31 +0.2 292,425 + PGA1_c03050 0.33 +1.3 292,426 - PGA1_c03050 0.33 +1.3 292,552 + PGA1_c03050 0.55 +2.0 292,602 + PGA1_c03050 0.64 +0.3 292,610 - PGA1_c03050 0.66 +0.4 292,653 - PGA1_c03050 0.73 +3.4 292,763 - +2.2 292,887 + +0.8 292,898 + +1.3 292,898 + -1.7 293,003 + PGA1_c03060 0.20 +1.1 293,191 - PGA1_c03060 0.39 -0.0 293,259 + PGA1_c03060 0.46 -0.2 293,259 + PGA1_c03060 0.46 -1.2 293,261 + PGA1_c03060 0.46 +2.3 293,272 + PGA1_c03060 0.47 +1.3 293,280 - PGA1_c03060 0.48 +0.9 293,350 + PGA1_c03060 0.55 +0.9 293,363 - PGA1_c03060 0.56 +1.3 293,419 + PGA1_c03060 0.62 +0.0 293,500 - PGA1_c03060 0.70 -2.2 293,535 - PGA1_c03060 0.73 -0.3 293,553 - PGA1_c03060 0.75 -1.0 293,623 + PGA1_c03060 0.82 +0.6 293,637 - PGA1_c03060 0.84 +0.6 293,641 - PGA1_c03060 0.84 +1.1 293,641 - PGA1_c03060 0.84 +1.9 293,643 + PGA1_c03060 0.84 +1.5 293,651 - PGA1_c03060 0.85 -1.5 293,676 + PGA1_c03060 0.88 +0.3 293,676 + PGA1_c03060 0.88 +0.9 293,679 + PGA1_c03060 0.88 -1.6 293,679 + PGA1_c03060 0.88 +1.8 293,679 + PGA1_c03060 0.88 +0.8 293,679 + PGA1_c03060 0.88 +0.3 293,679 + PGA1_c03060 0.88 +0.5 293,684 - PGA1_c03060 0.88 -1.9 293,687 - PGA1_c03060 0.89 +1.2 293,790 - +0.5 293,794 + +2.3 293,797 - +1.7
Or see this region's nucleotide sequence