Strain Fitness in Marinobacter adhaerens HP15 around HP15_2856

Experiment: m.b. acetate 87.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2855 and HP15_2856 are separated by 133 nucleotidesHP15_2856 and HP15_2857 are separated by 4 nucleotidesHP15_2857 and HP15_2858 are separated by 50 nucleotides HP15_2855: HP15_2855 - short-chain dehydrogenase/reductase SDR, at 2,996,051 to 2,996,821 _2855 HP15_2856: HP15_2856 - MOSC domain containing protein, at 2,996,955 to 2,997,371 _2856 HP15_2857: HP15_2857 - transcription termination factor rho, at 2,997,376 to 2,998,305 _2857 HP15_2858: HP15_2858 - hypothetical protein, at 2,998,356 to 2,998,508 _2858 Position (kb) 2996 2997 2998Strain fitness (log2 ratio) -2 -1 0 1at 2996.028 kb on + strandat 2996.169 kb on + strand, within HP15_2855at 2996.177 kb on + strand, within HP15_2855at 2996.235 kb on + strand, within HP15_2855at 2996.245 kb on + strand, within HP15_2855at 2996.255 kb on - strand, within HP15_2855at 2996.296 kb on + strand, within HP15_2855at 2996.343 kb on - strand, within HP15_2855at 2996.366 kb on - strand, within HP15_2855at 2996.391 kb on + strand, within HP15_2855at 2996.402 kb on + strand, within HP15_2855at 2996.434 kb on - strand, within HP15_2855at 2996.510 kb on - strand, within HP15_2855at 2996.525 kb on - strand, within HP15_2855at 2996.530 kb on + strand, within HP15_2855at 2996.530 kb on + strand, within HP15_2855at 2996.566 kb on + strand, within HP15_2855at 2996.618 kb on - strand, within HP15_2855at 2996.654 kb on + strand, within HP15_2855at 2996.659 kb on + strandat 2996.754 kb on + strandat 2996.778 kb on - strandat 2996.823 kb on - strandat 2996.885 kb on - strandat 2996.886 kb on + strandat 2996.908 kb on - strandat 2997.107 kb on + strand, within HP15_2856at 2997.108 kb on - strand, within HP15_2856at 2997.141 kb on + strand, within HP15_2856at 2997.144 kb on - strand, within HP15_2856at 2997.207 kb on + strand, within HP15_2856at 2997.215 kb on - strand, within HP15_2856at 2997.215 kb on - strand, within HP15_2856at 2997.257 kb on + strand, within HP15_2856at 2997.316 kb on - strand, within HP15_2856at 2997.365 kb on + strandat 2997.368 kb on - strandat 2997.368 kb on - strandat 2997.372 kb on + strandat 2997.373 kb on - strandat 2997.417 kb on + strandat 2997.477 kb on + strand, within HP15_2857at 2997.485 kb on - strand, within HP15_2857at 2997.506 kb on + strand, within HP15_2857at 2997.551 kb on - strand, within HP15_2857at 2997.555 kb on + strand, within HP15_2857at 2997.565 kb on - strand, within HP15_2857at 2997.649 kb on - strand, within HP15_2857at 2997.698 kb on - strand, within HP15_2857at 2997.939 kb on - strand, within HP15_2857at 2997.941 kb on + strand, within HP15_2857at 2997.954 kb on - strand, within HP15_2857at 2997.954 kb on - strand, within HP15_2857at 2998.015 kb on - strand, within HP15_2857at 2998.060 kb on - strand, within HP15_2857at 2998.060 kb on - strand, within HP15_2857at 2998.145 kb on - strand, within HP15_2857at 2998.185 kb on + strand, within HP15_2857at 2998.185 kb on + strand, within HP15_2857at 2998.270 kb on - strandat 2998.307 kb on + strandat 2998.315 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 87.5 mM
remove
2,996,028 + +0.9
2,996,169 + HP15_2855 0.15 -0.5
2,996,177 + HP15_2855 0.16 +0.0
2,996,235 + HP15_2855 0.24 -2.0
2,996,245 + HP15_2855 0.25 -0.3
2,996,255 - HP15_2855 0.26 +0.9
2,996,296 + HP15_2855 0.32 -0.1
2,996,343 - HP15_2855 0.38 -0.4
2,996,366 - HP15_2855 0.41 +0.2
2,996,391 + HP15_2855 0.44 -0.4
2,996,402 + HP15_2855 0.46 +1.0
2,996,434 - HP15_2855 0.50 -0.4
2,996,510 - HP15_2855 0.60 +0.6
2,996,525 - HP15_2855 0.61 +0.3
2,996,530 + HP15_2855 0.62 -0.7
2,996,530 + HP15_2855 0.62 +1.1
2,996,566 + HP15_2855 0.67 +0.8
2,996,618 - HP15_2855 0.74 -0.3
2,996,654 + HP15_2855 0.78 +0.9
2,996,659 + -0.1
2,996,754 + +0.4
2,996,778 - +1.1
2,996,823 - +1.2
2,996,885 - +1.1
2,996,886 + +1.0
2,996,908 - -0.1
2,997,107 + HP15_2856 0.36 +0.8
2,997,108 - HP15_2856 0.37 +0.5
2,997,141 + HP15_2856 0.45 -0.2
2,997,144 - HP15_2856 0.45 +1.6
2,997,207 + HP15_2856 0.60 +1.0
2,997,215 - HP15_2856 0.62 +0.6
2,997,215 - HP15_2856 0.62 -0.2
2,997,257 + HP15_2856 0.72 -0.1
2,997,316 - HP15_2856 0.87 +0.2
2,997,365 + +1.0
2,997,368 - -0.5
2,997,368 - -0.4
2,997,372 + -0.2
2,997,373 - -0.3
2,997,417 + -2.2
2,997,477 + HP15_2857 0.11 -0.2
2,997,485 - HP15_2857 0.12 -0.2
2,997,506 + HP15_2857 0.14 +1.2
2,997,551 - HP15_2857 0.19 +0.3
2,997,555 + HP15_2857 0.19 +0.0
2,997,565 - HP15_2857 0.20 -0.0
2,997,649 - HP15_2857 0.29 +0.9
2,997,698 - HP15_2857 0.35 -0.4
2,997,939 - HP15_2857 0.61 +1.0
2,997,941 + HP15_2857 0.61 +0.5
2,997,954 - HP15_2857 0.62 -1.5
2,997,954 - HP15_2857 0.62 -0.3
2,998,015 - HP15_2857 0.69 -1.0
2,998,060 - HP15_2857 0.74 +0.7
2,998,060 - HP15_2857 0.74 -0.2
2,998,145 - HP15_2857 0.83 -0.1
2,998,185 + HP15_2857 0.87 +0.5
2,998,185 + HP15_2857 0.87 +1.2
2,998,270 - -0.5
2,998,307 + +1.0
2,998,315 - +0.3

Or see this region's nucleotide sequence