Experiment: m.b. acetate 87.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2855 and HP15_2856 are separated by 133 nucleotides HP15_2856 and HP15_2857 are separated by 4 nucleotides HP15_2857 and HP15_2858 are separated by 50 nucleotides
HP15_2855: HP15_2855 - short-chain dehydrogenase/reductase SDR, at 2,996,051 to 2,996,821
_2855
HP15_2856: HP15_2856 - MOSC domain containing protein, at 2,996,955 to 2,997,371
_2856
HP15_2857: HP15_2857 - transcription termination factor rho, at 2,997,376 to 2,998,305
_2857
HP15_2858: HP15_2858 - hypothetical protein, at 2,998,356 to 2,998,508
_2858
Position (kb)
2996
2997
2998 Strain fitness (log2 ratio)
-2
-1
0
1 at 2996.028 kb on + strand at 2996.169 kb on + strand, within HP15_2855 at 2996.177 kb on + strand, within HP15_2855 at 2996.235 kb on + strand, within HP15_2855 at 2996.245 kb on + strand, within HP15_2855 at 2996.255 kb on - strand, within HP15_2855 at 2996.296 kb on + strand, within HP15_2855 at 2996.343 kb on - strand, within HP15_2855 at 2996.366 kb on - strand, within HP15_2855 at 2996.391 kb on + strand, within HP15_2855 at 2996.402 kb on + strand, within HP15_2855 at 2996.434 kb on - strand, within HP15_2855 at 2996.510 kb on - strand, within HP15_2855 at 2996.525 kb on - strand, within HP15_2855 at 2996.530 kb on + strand, within HP15_2855 at 2996.530 kb on + strand, within HP15_2855 at 2996.566 kb on + strand, within HP15_2855 at 2996.618 kb on - strand, within HP15_2855 at 2996.654 kb on + strand, within HP15_2855 at 2996.659 kb on + strand at 2996.754 kb on + strand at 2996.778 kb on - strand at 2996.823 kb on - strand at 2996.885 kb on - strand at 2996.886 kb on + strand at 2996.908 kb on - strand at 2997.107 kb on + strand, within HP15_2856 at 2997.108 kb on - strand, within HP15_2856 at 2997.141 kb on + strand, within HP15_2856 at 2997.144 kb on - strand, within HP15_2856 at 2997.207 kb on + strand, within HP15_2856 at 2997.215 kb on - strand, within HP15_2856 at 2997.215 kb on - strand, within HP15_2856 at 2997.257 kb on + strand, within HP15_2856 at 2997.316 kb on - strand, within HP15_2856 at 2997.365 kb on + strand at 2997.368 kb on - strand at 2997.368 kb on - strand at 2997.372 kb on + strand at 2997.373 kb on - strand at 2997.417 kb on + strand at 2997.477 kb on + strand, within HP15_2857 at 2997.485 kb on - strand, within HP15_2857 at 2997.506 kb on + strand, within HP15_2857 at 2997.551 kb on - strand, within HP15_2857 at 2997.555 kb on + strand, within HP15_2857 at 2997.565 kb on - strand, within HP15_2857 at 2997.649 kb on - strand, within HP15_2857 at 2997.698 kb on - strand, within HP15_2857 at 2997.939 kb on - strand, within HP15_2857 at 2997.941 kb on + strand, within HP15_2857 at 2997.954 kb on - strand, within HP15_2857 at 2997.954 kb on - strand, within HP15_2857 at 2998.015 kb on - strand, within HP15_2857 at 2998.060 kb on - strand, within HP15_2857 at 2998.060 kb on - strand, within HP15_2857 at 2998.145 kb on - strand, within HP15_2857 at 2998.185 kb on + strand, within HP15_2857 at 2998.185 kb on + strand, within HP15_2857 at 2998.270 kb on - strand at 2998.307 kb on + strand at 2998.315 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 87.5 mM remove 2,996,028 + +0.9 2,996,169 + HP15_2855 0.15 -0.5 2,996,177 + HP15_2855 0.16 +0.0 2,996,235 + HP15_2855 0.24 -2.0 2,996,245 + HP15_2855 0.25 -0.3 2,996,255 - HP15_2855 0.26 +0.9 2,996,296 + HP15_2855 0.32 -0.1 2,996,343 - HP15_2855 0.38 -0.4 2,996,366 - HP15_2855 0.41 +0.2 2,996,391 + HP15_2855 0.44 -0.4 2,996,402 + HP15_2855 0.46 +1.0 2,996,434 - HP15_2855 0.50 -0.4 2,996,510 - HP15_2855 0.60 +0.6 2,996,525 - HP15_2855 0.61 +0.3 2,996,530 + HP15_2855 0.62 -0.7 2,996,530 + HP15_2855 0.62 +1.1 2,996,566 + HP15_2855 0.67 +0.8 2,996,618 - HP15_2855 0.74 -0.3 2,996,654 + HP15_2855 0.78 +0.9 2,996,659 + -0.1 2,996,754 + +0.4 2,996,778 - +1.1 2,996,823 - +1.2 2,996,885 - +1.1 2,996,886 + +1.0 2,996,908 - -0.1 2,997,107 + HP15_2856 0.36 +0.8 2,997,108 - HP15_2856 0.37 +0.5 2,997,141 + HP15_2856 0.45 -0.2 2,997,144 - HP15_2856 0.45 +1.6 2,997,207 + HP15_2856 0.60 +1.0 2,997,215 - HP15_2856 0.62 +0.6 2,997,215 - HP15_2856 0.62 -0.2 2,997,257 + HP15_2856 0.72 -0.1 2,997,316 - HP15_2856 0.87 +0.2 2,997,365 + +1.0 2,997,368 - -0.5 2,997,368 - -0.4 2,997,372 + -0.2 2,997,373 - -0.3 2,997,417 + -2.2 2,997,477 + HP15_2857 0.11 -0.2 2,997,485 - HP15_2857 0.12 -0.2 2,997,506 + HP15_2857 0.14 +1.2 2,997,551 - HP15_2857 0.19 +0.3 2,997,555 + HP15_2857 0.19 +0.0 2,997,565 - HP15_2857 0.20 -0.0 2,997,649 - HP15_2857 0.29 +0.9 2,997,698 - HP15_2857 0.35 -0.4 2,997,939 - HP15_2857 0.61 +1.0 2,997,941 + HP15_2857 0.61 +0.5 2,997,954 - HP15_2857 0.62 -1.5 2,997,954 - HP15_2857 0.62 -0.3 2,998,015 - HP15_2857 0.69 -1.0 2,998,060 - HP15_2857 0.74 +0.7 2,998,060 - HP15_2857 0.74 -0.2 2,998,145 - HP15_2857 0.83 -0.1 2,998,185 + HP15_2857 0.87 +0.5 2,998,185 + HP15_2857 0.87 +1.2 2,998,270 - -0.5 2,998,307 + +1.0 2,998,315 - +0.3
Or see this region's nucleotide sequence