Strain Fitness in Marinobacter adhaerens HP15 around HP15_2772

Experiment: m.b. acetate 87.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2770 and HP15_2771 are separated by 0 nucleotidesHP15_2771 and HP15_2772 are separated by 41 nucleotidesHP15_2772 and HP15_2773 are separated by 14 nucleotidesHP15_2773 and HP15_2774 are separated by 20 nucleotides HP15_2770: HP15_2770 - permease for cytosine/purines uracil thiamine allantoin, at 2,923,117 to 2,924,400 _2770 HP15_2771: HP15_2771 - DNA-binding protein, at 2,924,401 to 2,925,024 _2771 HP15_2772: HP15_2772 - N-isopropylammelide isopropylaminohydrolase, at 2,925,066 to 2,926,310 _2772 HP15_2773: HP15_2773 - conserved hypothetical protein, membrane, at 2,926,325 to 2,926,780 _2773 HP15_2774: HP15_2774 - DSBA oxidoreductase, at 2,926,801 to 2,927,448 _2774 Position (kb) 2925 2926 2927Strain fitness (log2 ratio) -1 0 1 2at 2924.085 kb on - strand, within HP15_2770at 2924.206 kb on - strand, within HP15_2770at 2924.213 kb on + strand, within HP15_2770at 2924.283 kb on - strandat 2924.323 kb on + strandat 2924.331 kb on - strandat 2924.423 kb on + strandat 2924.423 kb on + strandat 2924.430 kb on - strandat 2924.430 kb on - strandat 2924.495 kb on + strand, within HP15_2771at 2924.532 kb on + strand, within HP15_2771at 2924.611 kb on - strand, within HP15_2771at 2924.676 kb on + strand, within HP15_2771at 2924.684 kb on + strand, within HP15_2771at 2924.697 kb on + strand, within HP15_2771at 2924.738 kb on - strand, within HP15_2771at 2924.738 kb on - strand, within HP15_2771at 2924.738 kb on - strand, within HP15_2771at 2924.786 kb on + strand, within HP15_2771at 2924.824 kb on - strand, within HP15_2771at 2924.875 kb on + strand, within HP15_2771at 2924.992 kb on + strandat 2925.398 kb on + strand, within HP15_2772at 2925.423 kb on + strand, within HP15_2772at 2925.431 kb on - strand, within HP15_2772at 2925.460 kb on + strand, within HP15_2772at 2925.580 kb on + strand, within HP15_2772at 2925.616 kb on - strand, within HP15_2772at 2925.623 kb on + strand, within HP15_2772at 2925.631 kb on - strand, within HP15_2772at 2925.691 kb on - strand, within HP15_2772at 2925.787 kb on + strand, within HP15_2772at 2926.035 kb on + strand, within HP15_2772at 2926.074 kb on - strand, within HP15_2772at 2926.146 kb on - strand, within HP15_2772at 2926.146 kb on - strand, within HP15_2772at 2926.241 kb on - strandat 2926.285 kb on - strandat 2926.305 kb on - strandat 2926.316 kb on + strandat 2926.474 kb on - strand, within HP15_2773at 2926.493 kb on + strand, within HP15_2773at 2926.499 kb on + strand, within HP15_2773at 2926.621 kb on + strand, within HP15_2773at 2926.724 kb on + strand, within HP15_2773at 2926.802 kb on + strandat 2926.872 kb on + strand, within HP15_2774at 2926.913 kb on - strand, within HP15_2774at 2926.988 kb on - strand, within HP15_2774at 2927.015 kb on + strand, within HP15_2774at 2927.028 kb on - strand, within HP15_2774at 2927.107 kb on - strand, within HP15_2774at 2927.107 kb on - strand, within HP15_2774at 2927.109 kb on + strand, within HP15_2774at 2927.241 kb on - strand, within HP15_2774at 2927.281 kb on + strand, within HP15_2774at 2927.301 kb on + strand, within HP15_2774

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 87.5 mM
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2,924,085 - HP15_2770 0.75 -0.5
2,924,206 - HP15_2770 0.85 -0.0
2,924,213 + HP15_2770 0.85 +2.4
2,924,283 - +0.8
2,924,323 + -0.7
2,924,331 - -0.4
2,924,423 + -0.3
2,924,423 + -0.4
2,924,430 - +0.9
2,924,430 - +0.6
2,924,495 + HP15_2771 0.15 -0.4
2,924,532 + HP15_2771 0.21 -0.1
2,924,611 - HP15_2771 0.34 -0.4
2,924,676 + HP15_2771 0.44 +1.0
2,924,684 + HP15_2771 0.45 -0.3
2,924,697 + HP15_2771 0.47 +0.6
2,924,738 - HP15_2771 0.54 -0.6
2,924,738 - HP15_2771 0.54 -0.5
2,924,738 - HP15_2771 0.54 +0.5
2,924,786 + HP15_2771 0.62 +0.8
2,924,824 - HP15_2771 0.68 -0.7
2,924,875 + HP15_2771 0.76 +0.9
2,924,992 + +0.6
2,925,398 + HP15_2772 0.27 +0.7
2,925,423 + HP15_2772 0.29 -0.2
2,925,431 - HP15_2772 0.29 -0.3
2,925,460 + HP15_2772 0.32 -1.0
2,925,580 + HP15_2772 0.41 -0.7
2,925,616 - HP15_2772 0.44 +1.0
2,925,623 + HP15_2772 0.45 -0.4
2,925,631 - HP15_2772 0.45 -0.0
2,925,691 - HP15_2772 0.50 -0.3
2,925,787 + HP15_2772 0.58 -0.2
2,926,035 + HP15_2772 0.78 -0.9
2,926,074 - HP15_2772 0.81 -0.9
2,926,146 - HP15_2772 0.87 -0.3
2,926,146 - HP15_2772 0.87 -0.0
2,926,241 - +1.0
2,926,285 - -0.5
2,926,305 - -0.2
2,926,316 + -0.2
2,926,474 - HP15_2773 0.33 -0.2
2,926,493 + HP15_2773 0.37 +0.1
2,926,499 + HP15_2773 0.38 +0.9
2,926,621 + HP15_2773 0.65 +0.6
2,926,724 + HP15_2773 0.88 -0.7
2,926,802 + +0.9
2,926,872 + HP15_2774 0.11 +0.3
2,926,913 - HP15_2774 0.17 -1.6
2,926,988 - HP15_2774 0.29 -1.0
2,927,015 + HP15_2774 0.33 -0.2
2,927,028 - HP15_2774 0.35 +0.1
2,927,107 - HP15_2774 0.47 +0.1
2,927,107 - HP15_2774 0.47 -0.3
2,927,109 + HP15_2774 0.48 +0.1
2,927,241 - HP15_2774 0.68 +0.4
2,927,281 + HP15_2774 0.74 +0.9
2,927,301 + HP15_2774 0.77 -0.6

Or see this region's nucleotide sequence