Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c27750

Experiment: m.b. nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 6 mM
2,890,990	-		PGA1_c27730	0.48	-0.0
2,891,157	-		PGA1_c27730	0.71	+1.2
2,891,194	+		PGA1_c27730	0.77	+0.1
2,891,229	+		PGA1_c27730	0.82	+0.5
2,891,245	-		PGA1_c27730	0.84	-1.7
2,891,249	-		PGA1_c27730	0.84	-0.9
2,891,259	-		PGA1_c27730	0.86	-0.0
2,891,273	+		PGA1_c27730	0.88	+0.5
2,891,278	+		PGA1_c27730	0.89	-0.4
2,891,278	+		PGA1_c27730	0.89	-1.1
2,891,286	-		PGA1_c27730	0.90	-0.1
2,891,286	-		PGA1_c27730	0.90	-1.0
2,891,337	-				-0.9
2,891,339	+				-0.3
2,891,343	+				+0.3
2,891,351	-				-2.1
2,891,351	-				-0.7
2,891,478	+		PGA1_c27740	0.25	-1.6
2,891,486	-		PGA1_c27740	0.27	-0.7
2,891,503	-		PGA1_c27740	0.30	-0.2
2,891,510	-		PGA1_c27740	0.32	-0.8
2,891,549	-		PGA1_c27740	0.40	-0.2
2,891,634	-		PGA1_c27740	0.58	+1.3
2,891,650	+		PGA1_c27740	0.61	-1.5
2,891,797	+				+0.3
2,891,797	+				-1.0
2,891,804	-				-1.6
2,891,805	-				-3.1
2,891,805	-				+0.5
2,891,863	+				-0.1
2,891,863	+				-1.1
2,891,871	-				-2.9
2,891,920	-				-3.7
2,892,055	+		PGA1_c27750	0.18	+1.9
2,892,074	+		PGA1_c27750	0.20	+0.7
2,892,092	-		PGA1_c27750	0.22	+1.4
2,892,098	+		PGA1_c27750	0.23	+1.1
2,892,098	+		PGA1_c27750	0.23	-0.1
2,892,141	+		PGA1_c27750	0.28	+0.6
2,892,141	+		PGA1_c27750	0.28	+1.5
2,892,169	-		PGA1_c27750	0.32	-3.1
2,892,182	+		PGA1_c27750	0.33	-0.1
2,892,187	+		PGA1_c27750	0.34	+4.2
2,892,190	-		PGA1_c27750	0.34	+2.6
2,892,199	+		PGA1_c27750	0.35	-3.1
2,892,200	+		PGA1_c27750	0.36	-0.5
2,892,218	+		PGA1_c27750	0.38	+2.7
2,892,226	-		PGA1_c27750	0.39	-0.5
2,892,252	+		PGA1_c27750	0.42	+1.0
2,892,260	-		PGA1_c27750	0.43	-0.0
2,892,260	-		PGA1_c27750	0.43	-4.0
2,892,262	+		PGA1_c27750	0.43	+0.9
2,892,276	+		PGA1_c27750	0.45	+2.3
2,892,372	-		PGA1_c27750	0.57	+1.2
2,892,393	+		PGA1_c27750	0.60	+1.3
2,892,549	+		PGA1_c27750	0.79	-1.6
2,892,612	+		PGA1_c27750	0.87	+0.6
2,892,637	-				+0.2
2,892,644	+				+3.1
2,892,661	-				+0.3
2,892,689	+				+2.1
2,892,702	+				-2.1
2,892,702	+				+0.6
2,892,710	-				+1.9
2,892,747	+				+1.1
2,892,757	+				-0.3
2,892,765	-				+1.3
2,892,765	-				+0.9
2,892,835	+		PGA1_c27760	0.17	+0.2
2,892,873	+		PGA1_c27760	0.22	-0.8
2,892,954	+		PGA1_c27760	0.33	+0.8
2,893,027	+		PGA1_c27760	0.43	-0.9
2,893,077	-		PGA1_c27760	0.50	+1.1
2,893,079	+		PGA1_c27760	0.50	-0.2
2,893,084	+		PGA1_c27760	0.51	-0.2
2,893,084	+		PGA1_c27760	0.51	+0.7
2,893,092	-		PGA1_c27760	0.52	-1.9
2,893,096	+		PGA1_c27760	0.53	+1.7
2,893,097	-		PGA1_c27760	0.53	-0.4
2,893,104	-		PGA1_c27760	0.54	+0.2
2,893,141	+		PGA1_c27760	0.59	+2.0
2,893,194	+		PGA1_c27760	0.66	+0.8
2,893,201	+		PGA1_c27760	0.67	+0.0
2,893,233	+		PGA1_c27760	0.71	-0.1
2,893,262	+		PGA1_c27760	0.75	-0.5
2,893,331	+		PGA1_c27760	0.85	+2.3
2,893,391	+				-0.4
2,893,407	-				-1.9
2,893,423	+				-1.1
2,893,423	+				-1.4
2,893,510	+		PGA1_c27770	0.10	+0.8
2,893,510	+		PGA1_c27770	0.10	+1.6
2,893,517	+		PGA1_c27770	0.11	-0.1
2,893,518	-		PGA1_c27770	0.12	+2.9
2,893,518	-		PGA1_c27770	0.12	-3.1
2,893,575	+		PGA1_c27770	0.20	+1.4
2,893,583	-		PGA1_c27770	0.21	+0.5
2,893,654	-		PGA1_c27770	0.31	-0.4
2,893,689	+		PGA1_c27770	0.36	+1.3
2,893,689	+		PGA1_c27770	0.36	-0.9
2,893,689	+		PGA1_c27770	0.36	+1.3
2,893,689	+		PGA1_c27770	0.36	+0.4
2,893,697	-		PGA1_c27770	0.37	+1.2
2,893,697	-		PGA1_c27770	0.37	+1.1
2,893,697	-		PGA1_c27770	0.37	+0.2
2,893,701	+		PGA1_c27770	0.38	-1.3
2,893,701	+		PGA1_c27770	0.38	-1.0
2,893,709	-		PGA1_c27770	0.39	+1.2