Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c26360

Experiment: m.b. nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 6 mM
2,744,460	-				+0.1
2,744,465	+				+0.2
2,744,488	-				+1.1
2,744,519	+				+0.6
2,744,546	+				-0.6
2,744,546	+				-0.9
2,744,554	+				+3.6
2,744,554	-				+1.7
2,744,554	-				+1.7
2,744,567	-				-2.1
2,744,576	-				-0.5
2,744,620	+				+2.8
2,744,633	-				-0.5
2,744,638	-				-0.2
2,744,649	-				+0.7
2,744,666	-		PGA1_c26350	0.12	-0.1
2,744,708	-		PGA1_c26350	0.19	-0.6
2,744,728	+		PGA1_c26350	0.23	+0.5
2,744,735	+		PGA1_c26350	0.24	+1.5
2,744,743	-		PGA1_c26350	0.26	+1.9
2,744,753	+		PGA1_c26350	0.27	+0.2
2,744,761	-		PGA1_c26350	0.29	-1.5
2,744,801	+		PGA1_c26350	0.36	+1.3
2,744,801	+		PGA1_c26350	0.36	+0.1
2,744,801	+		PGA1_c26350	0.36	-1.5
2,744,801	+		PGA1_c26350	0.36	+0.1
2,744,809	-		PGA1_c26350	0.38	+1.1
2,744,861	-		PGA1_c26350	0.47	+0.9
2,744,984	+		PGA1_c26350	0.69	+2.1
2,744,984	+		PGA1_c26350	0.69	+1.7
2,744,984	+		PGA1_c26350	0.69	-0.0
2,745,012	-		PGA1_c26350	0.74	+1.1
2,745,032	+		PGA1_c26350	0.78	+1.5
2,745,050	-		PGA1_c26350	0.81	+0.6
2,745,064	+		PGA1_c26350	0.84	-0.2
2,745,073	+		PGA1_c26350	0.85	-3.1
2,745,085	-		PGA1_c26350	0.88	+1.1
2,745,117	-				-1.9
2,745,147	+				-1.0
2,745,147	+				-0.2
2,745,155	-				-0.6
2,745,273	+				+0.7
2,745,334	+				+0.1
2,745,334	+				+1.4
2,745,347	-				+1.4
2,745,356	+				+1.1
2,745,358	+				+0.1
2,745,364	-				+1.8
2,745,364	-				-2.2
2,745,364	-				+0.1
2,745,401	+				-0.5
2,745,489	+		PGA1_c26360	0.19	-0.2
2,745,491	-		PGA1_c26360	0.20	+1.1
2,745,497	-		PGA1_c26360	0.23	+0.1
2,745,497	-		PGA1_c26360	0.23	+0.1
2,745,524	-		PGA1_c26360	0.36	-1.7
2,745,557	-		PGA1_c26360	0.52	-1.0
2,745,564	-		PGA1_c26360	0.55	-0.0
2,745,564	-		PGA1_c26360	0.55	-1.7
2,745,564	-		PGA1_c26360	0.55	+1.5
2,745,636	-				+2.8
2,745,650	+				+1.0
2,745,740	+				+0.8
2,745,740	+				-1.0
2,745,742	+				-0.7
2,745,765	+				-0.5
2,745,784	+				-0.6
2,745,871	+		PGA1_c26370	0.13	-0.5
2,745,943	-		PGA1_c26370	0.24	-2.5
2,745,957	-		PGA1_c26370	0.27	+0.1
2,745,961	+		PGA1_c26370	0.27	+1.1
2,746,014	-		PGA1_c26370	0.36	+0.8
2,746,031	-		PGA1_c26370	0.38	-1.7
2,746,064	-		PGA1_c26370	0.43	-0.5
2,746,066	+		PGA1_c26370	0.44	+0.5
2,746,066	+		PGA1_c26370	0.44	-1.3
2,746,074	-		PGA1_c26370	0.45	+1.4
2,746,074	-		PGA1_c26370	0.45	-3.5
2,746,074	-		PGA1_c26370	0.45	-0.0
2,746,074	-		PGA1_c26370	0.45	-1.9
2,746,074	-		PGA1_c26370	0.45	-1.5
2,746,074	-		PGA1_c26370	0.45	-2.5
2,746,074	-		PGA1_c26370	0.45	-1.1
2,746,074	-		PGA1_c26370	0.45	+0.8
2,746,121	+		PGA1_c26370	0.52	-2.5
2,746,126	+		PGA1_c26370	0.53	-0.1
2,746,129	-		PGA1_c26370	0.53	-1.7
2,746,129	-		PGA1_c26370	0.53	+0.3
2,746,129	-		PGA1_c26370	0.53	+0.2
2,746,129	-		PGA1_c26370	0.53	+2.1
2,746,129	-		PGA1_c26370	0.53	-0.9
2,746,129	-		PGA1_c26370	0.53	-1.7
2,746,129	-		PGA1_c26370	0.53	-2.2
2,746,177	-		PGA1_c26370	0.61	-0.9
2,746,177	-		PGA1_c26370	0.61	-1.1
2,746,235	+		PGA1_c26370	0.70	+0.7
2,746,297	+		PGA1_c26370	0.80	+1.1
2,746,321	+		PGA1_c26370	0.83	-0.6
2,746,326	+		PGA1_c26370	0.84	+1.1
2,746,327	-		PGA1_c26370	0.84	+0.2
2,746,327	-		PGA1_c26370	0.84	-0.1
2,746,334	-		PGA1_c26370	0.85	+0.7
2,746,341	+		PGA1_c26370	0.86	+0.5
2,746,347	-		PGA1_c26370	0.87	-0.8
2,746,349	-		PGA1_c26370	0.88	+2.2
2,746,366	+				+0.1
2,746,374	-				-0.9
2,746,374	-				+1.1
2,746,374	-				+0.1
2,746,374	-				-1.4
2,746,419	-				-1.9
2,746,435	-				-0.8
2,746,474	+				-0.4
2,746,484	+				+3.0
2,746,492	-				-0.9
2,746,492	-				+2.1
2,746,496	+				+0.6
2,746,501	+				-0.1
2,746,504	-				+0.5
2,746,504	-				-1.9
2,746,512	+				-2.3
2,746,593	+		PGA1_c26380	0.16	-1.2
2,746,601	-		PGA1_c26380	0.17	-0.1
2,746,601	-		PGA1_c26380	0.17	-0.5
2,746,609	+		PGA1_c26380	0.18	-0.9
2,746,609	+		PGA1_c26380	0.18	+0.4
2,746,617	-		PGA1_c26380	0.19	+2.7