Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c26340

Experiment: m.b. nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 6 mM
2,741,988	+				+0.3
2,742,103	+				+3.9
2,742,103	+				-1.1
2,742,103	+				-1.4
2,742,103	+				+1.1
2,742,103	+				+1.2
2,742,103	+				+0.1
2,742,103	+				-0.6
2,742,103	+				-1.3
2,742,103	+				-0.9
2,742,103	+				-3.0
2,742,103	+				+1.1
2,742,111	-				-0.6
2,742,111	-				+1.5
2,742,111	-				-0.6
2,742,111	-				-0.4
2,742,111	-				+0.9
2,742,111	-				+0.1
2,742,113	-				-1.7
2,742,164	-				+0.1
2,742,169	+				+0.6
2,742,204	+				-2.4
2,742,212	-				-0.7
2,742,214	+				-1.0
2,742,216	+				+2.0
2,742,224	-				-1.8
2,742,224	-				+0.8
2,742,226	+				-1.4
2,742,287	-				-1.2
2,742,314	-				+0.9
2,742,378	+				+1.2
2,742,430	-		PGA1_c26330	0.11	+0.4
2,742,444	-		PGA1_c26330	0.15	-0.2
2,742,444	-		PGA1_c26330	0.15	-2.0
2,742,500	+		PGA1_c26330	0.28	+0.7
2,742,513	-		PGA1_c26330	0.31	-1.5
2,742,514	+		PGA1_c26330	0.31	+0.9
2,742,527	+		PGA1_c26330	0.34	-1.5
2,742,599	+		PGA1_c26330	0.51	-3.1
2,742,600	+		PGA1_c26330	0.51	+1.1
2,742,600	+		PGA1_c26330	0.51	-0.4
2,742,600	+		PGA1_c26330	0.51	-0.7
2,742,600	+		PGA1_c26330	0.51	-4.2
2,742,600	+		PGA1_c26330	0.51	-2.4
2,742,600	+		PGA1_c26330	0.51	-0.9
2,742,600	+		PGA1_c26330	0.51	+1.4
2,742,608	-		PGA1_c26330	0.53	-2.0
2,742,608	-		PGA1_c26330	0.53	-0.1
2,742,608	-		PGA1_c26330	0.53	+1.7
2,742,608	-		PGA1_c26330	0.53	+1.0
2,742,608	-		PGA1_c26330	0.53	+1.4
2,742,664	-		PGA1_c26330	0.66	+0.6
2,742,668	-		PGA1_c26330	0.67	-0.3
2,742,688	-		PGA1_c26330	0.72	+1.3
2,742,771	+				-3.2
2,742,771	+				-3.4
2,742,771	+				-0.4
2,742,771	+				-1.0
2,742,787	+				+1.2
2,742,858	+				-3.0
2,742,889	-				+1.7
2,742,915	+				-0.5
2,742,950	+				-0.9
2,742,958	-				-1.0
2,742,971	+				-0.4
2,742,990	-				-0.8
2,743,036	-				-1.4
2,743,036	-				-0.1
2,743,196	-		PGA1_c26340	0.22	+1.8
2,743,196	-		PGA1_c26340	0.22	-2.8
2,743,196	-		PGA1_c26340	0.22	-0.9
2,743,228	+		PGA1_c26340	0.24	-0.5
2,743,273	-		PGA1_c26340	0.28	+1.1
2,743,274	+		PGA1_c26340	0.28	+0.1
2,743,279	+		PGA1_c26340	0.28	-0.9
2,743,282	-		PGA1_c26340	0.29	+0.1
2,743,287	-		PGA1_c26340	0.29	-0.4
2,743,301	+		PGA1_c26340	0.30	+0.3
2,743,309	-		PGA1_c26340	0.31	-0.1
2,743,362	+		PGA1_c26340	0.35	-0.1
2,743,362	+		PGA1_c26340	0.35	-2.1
2,743,370	-		PGA1_c26340	0.36	+0.7
2,743,370	-		PGA1_c26340	0.36	+0.0
2,743,370	-		PGA1_c26340	0.36	-1.4
2,743,411	+		PGA1_c26340	0.39	+2.1
2,743,411	-		PGA1_c26340	0.39	+0.8
2,743,419	-		PGA1_c26340	0.40	-1.9
2,743,424	+		PGA1_c26340	0.40	+0.6
2,743,536	-		PGA1_c26340	0.49	+0.7
2,743,578	-		PGA1_c26340	0.52	-0.8
2,743,578	-		PGA1_c26340	0.52	+0.8
2,743,599	+		PGA1_c26340	0.54	-2.1
2,743,651	+		PGA1_c26340	0.58	+0.7
2,743,651	+		PGA1_c26340	0.58	-1.9
2,743,651	+		PGA1_c26340	0.58	+0.9
2,743,659	-		PGA1_c26340	0.59	-0.5
2,743,659	-		PGA1_c26340	0.59	+1.1
2,743,719	-		PGA1_c26340	0.64	-1.9
2,743,721	+		PGA1_c26340	0.64	-1.2
2,743,729	-		PGA1_c26340	0.65	-0.1
2,743,765	+		PGA1_c26340	0.67	+1.7
2,743,789	+		PGA1_c26340	0.69	+0.8
2,743,797	-		PGA1_c26340	0.70	-1.6
2,743,829	+		PGA1_c26340	0.73	+0.2
2,743,837	-		PGA1_c26340	0.73	+2.7
2,743,837	-		PGA1_c26340	0.73	-1.9
2,743,844	-		PGA1_c26340	0.74	-0.8
2,743,846	-		PGA1_c26340	0.74	+1.1
2,743,846	-		PGA1_c26340	0.74	+0.3
2,743,854	+		PGA1_c26340	0.75	-2.8
2,743,862	-		PGA1_c26340	0.75	-0.4
2,743,917	+		PGA1_c26340	0.80	+0.5
2,743,960	+		PGA1_c26340	0.83	-1.2
2,743,985	+		PGA1_c26340	0.85	-0.7
2,743,995	+		PGA1_c26340	0.86	-0.9
2,744,018	+		PGA1_c26340	0.88	+0.3
2,744,026	-		PGA1_c26340	0.88	-0.4
2,744,039	+		PGA1_c26340	0.90	-0.5
2,744,047	-				+1.6
2,744,051	+				-0.1
2,744,059	-				-1.2
2,744,059	-				+1.2
2,744,079	+				+1.0
2,744,099	+				-0.4
2,744,119	+				-2.4
2,744,199	+				+2.5
2,744,243	+				-0.6
2,744,243	+				-0.2
2,744,251	-				+1.8
2,744,251	-				-1.9
2,744,331	+				-0.5
2,744,339	-				+1.3
2,744,460	-				+0.1
2,744,465	+				+0.2
2,744,488	-				+1.1
2,744,519	+				+0.6
2,744,546	+				-0.6
2,744,546	+				-0.9
2,744,554	+				+3.6
2,744,554	-				+1.7
2,744,554	-				+1.7
2,744,567	-				-2.1
2,744,576	-				-0.5
2,744,620	+				+2.8
2,744,633	-				-0.5
2,744,638	-				-0.2
2,744,649	-				+0.7
2,744,666	-		PGA1_c26350	0.12	-0.1
2,744,708	-		PGA1_c26350	0.19	-0.6
2,744,728	+		PGA1_c26350	0.23	+0.5
2,744,735	+		PGA1_c26350	0.24	+1.5
2,744,743	-		PGA1_c26350	0.26	+1.9
2,744,753	+		PGA1_c26350	0.27	+0.2
2,744,761	-		PGA1_c26350	0.29	-1.5
2,744,801	+		PGA1_c26350	0.36	+1.3
2,744,801	+		PGA1_c26350	0.36	+0.1
2,744,801	+		PGA1_c26350	0.36	-1.5
2,744,801	+		PGA1_c26350	0.36	+0.1
2,744,809	-		PGA1_c26350	0.38	+1.1
2,744,861	-		PGA1_c26350	0.47	+0.9
2,744,984	+		PGA1_c26350	0.69	+2.1
2,744,984	+		PGA1_c26350	0.69	+1.7
2,744,984	+		PGA1_c26350	0.69	-0.0
2,745,012	-		PGA1_c26350	0.74	+1.1
2,745,032	+		PGA1_c26350	0.78	+1.5
2,745,050	-		PGA1_c26350	0.81	+0.6
2,745,064	+		PGA1_c26350	0.84	-0.2
2,745,073	+		PGA1_c26350	0.85	-3.1
2,745,085	-		PGA1_c26350	0.88	+1.1
2,745,117	-				-1.9
2,745,147	+				-1.0
2,745,147	+				-0.2
2,745,155	-				-0.6