Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c25750

Experiment: m.b. nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 6 mM
2,682,771	-		PGA1_c25740	0.68	-2.4
2,682,845	+		PGA1_c25740	0.71	+1.0
2,682,885	-		PGA1_c25740	0.72	+1.3
2,682,903	-		PGA1_c25740	0.73	+1.5
2,682,918	-		PGA1_c25740	0.73	+1.0
2,682,918	-		PGA1_c25740	0.73	+1.3
2,682,960	-		PGA1_c25740	0.75	-0.1
2,683,149	-		PGA1_c25740	0.82	+0.1
2,683,289	+		PGA1_c25740	0.87	-1.2
2,683,297	+		PGA1_c25740	0.87	+0.2
2,683,330	+		PGA1_c25740	0.88	+0.5
2,683,330	+		PGA1_c25740	0.88	+0.0
2,683,338	-		PGA1_c25740	0.89	+1.1
2,683,366	+		PGA1_c25740	0.90	+1.0
2,683,366	+		PGA1_c25740	0.90	-0.4
2,683,442	-				+1.2
2,683,480	+				+1.8
2,683,501	-				-0.4
2,683,593	+				+1.5
2,683,593	+				-1.5
2,683,606	-				-2.2
2,683,609	+				+0.8
2,683,609	+				+1.4
2,683,609	+				-0.1
2,683,609	+				+1.9
2,683,609	+				-0.4
2,683,609	+				+1.6
2,683,617	-				+1.0
2,683,617	-				+0.6
2,683,617	-				+1.3
2,683,657	+				-1.2
2,683,657	+				+0.3
2,683,657	+				-0.4
2,683,657	+				+1.5
2,683,657	+				+3.2
2,683,659	-				-1.1
2,683,665	-				-0.8
2,683,665	-				-0.7
2,683,665	-				+0.3
2,683,665	-				+1.5
2,683,665	-				+1.3
2,683,687	-				-0.2
2,683,706	-				-0.0
2,683,713	-				+1.1
2,683,713	-				+0.9
2,683,713	-				-1.9
2,683,713	-				-2.9
2,683,715	+				-0.8
2,683,715	+				+0.3
2,683,723	-				+0.5
2,683,723	-				+0.4
2,683,723	-				-3.0
2,683,736	-				+1.8
2,683,752	+				-0.5
2,683,760	-				-0.2
2,683,839	-		PGA1_c25750	0.10	+1.7
2,683,875	+		PGA1_c25750	0.12	+0.6
2,683,888	-		PGA1_c25750	0.13	-0.6
2,683,960	-		PGA1_c25750	0.17	+0.8
2,684,011	-		PGA1_c25750	0.20	+1.5
2,684,011	-		PGA1_c25750	0.20	+2.7
2,684,133	+		PGA1_c25750	0.27	+0.2
2,684,141	+		PGA1_c25750	0.28	+1.3
2,684,180	-		PGA1_c25750	0.30	+1.1
2,684,180	-		PGA1_c25750	0.30	+0.7
2,684,193	+		PGA1_c25750	0.31	+1.8
2,684,232	-		PGA1_c25750	0.33	+1.9
2,684,233	+		PGA1_c25750	0.33	-2.1
2,684,252	+		PGA1_c25750	0.34	-3.4
2,684,274	+		PGA1_c25750	0.36	+0.4
2,684,374	-		PGA1_c25750	0.41	+2.3
2,684,489	-		PGA1_c25750	0.48	+1.8
2,684,520	+		PGA1_c25750	0.50	+2.7
2,684,557	+		PGA1_c25750	0.52	+1.0
2,684,570	+		PGA1_c25750	0.53	-0.9
2,684,570	+		PGA1_c25750	0.53	+2.2
2,684,578	-		PGA1_c25750	0.53	-1.1
2,684,626	+		PGA1_c25750	0.56	+3.2
2,684,738	+		PGA1_c25750	0.62	-0.5
2,684,825	-		PGA1_c25750	0.67	-0.9
2,684,839	+		PGA1_c25750	0.68	+1.0
2,684,839	+		PGA1_c25750	0.68	+1.5
2,684,847	+		PGA1_c25750	0.69	+0.5
2,684,847	+		PGA1_c25750	0.69	+0.4
2,684,847	-		PGA1_c25750	0.69	+0.9
2,684,847	-		PGA1_c25750	0.69	+0.6
2,684,847	-		PGA1_c25750	0.69	-0.6
2,684,950	-		PGA1_c25750	0.75	+1.3
2,684,997	-		PGA1_c25750	0.77	+1.0
2,685,027	+		PGA1_c25750	0.79	-1.7
2,685,030	+		PGA1_c25750	0.79	+1.3
2,685,144	+		PGA1_c25750	0.86	+1.8
2,685,216	-		PGA1_c25750	0.90	+1.8
2,685,232	+				+0.7
2,685,322	+				-0.3
2,685,330	-				+0.9
2,685,333	+				+1.0
2,685,341	-				+2.5
2,685,361	-				+0.9
2,685,361	-				+0.9
2,685,482	-				+0.1
2,685,568	-		PGA1_c25760	0.13	+0.6
2,685,568	-		PGA1_c25760	0.13	+1.2
2,685,630	-		PGA1_c25760	0.19	+0.9
2,685,695	+		PGA1_c25760	0.26	+0.9
2,685,718	-		PGA1_c25760	0.28	+1.3
2,685,844	-		PGA1_c25760	0.41	+0.7
2,685,868	-		PGA1_c25760	0.44	-1.7
2,685,889	-		PGA1_c25760	0.46	+0.7
2,685,955	-		PGA1_c25760	0.53	+0.3
2,685,962	+		PGA1_c25760	0.53	-0.9
2,685,969	-		PGA1_c25760	0.54	+2.3
2,686,021	+		PGA1_c25760	0.59	-1.5
2,686,071	-		PGA1_c25760	0.64	-0.2
2,686,126	-		PGA1_c25760	0.70	-0.8
2,686,166	+		PGA1_c25760	0.74	+0.4
2,686,202	+		PGA1_c25760	0.78	+1.3
2,686,202	+		PGA1_c25760	0.78	-0.5
2,686,210	-		PGA1_c25760	0.79	+1.3
2,686,210	-		PGA1_c25760	0.79	+0.4
2,686,212	+		PGA1_c25760	0.79	-0.7
2,686,214	+		PGA1_c25760	0.79	+0.3
2,686,222	-		PGA1_c25760	0.80	-3.2
2,686,258	+		PGA1_c25760	0.84	-0.8
2,686,271	-		PGA1_c25760	0.85	+1.3