Experiment: m.b. nitrite 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c25740 and PGA1_c25750 are separated by 3 nucleotides PGA1_c25750 and PGA1_c25760 are separated by 51 nucleotides
PGA1_c25740: PGA1_c25740 - formate dehydrogenase H, at 2,680,881 to 2,683,655
_c25740
PGA1_c25750: PGA1_c25750 - NADH-quinone oxidoreductase subunits E/F (fused), at 2,683,659 to 2,685,389
_c25750
PGA1_c25760: PGA1_c25760 - transcriptional regulator, LysR family, at 2,685,441 to 2,686,418
_c25760
Position (kb)
2683
2684
2685
2686 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2682.771 kb on - strand, within PGA1_c25740 at 2682.845 kb on + strand, within PGA1_c25740 at 2682.885 kb on - strand, within PGA1_c25740 at 2682.903 kb on - strand, within PGA1_c25740 at 2682.918 kb on - strand, within PGA1_c25740 at 2682.918 kb on - strand, within PGA1_c25740 at 2682.960 kb on - strand, within PGA1_c25740 at 2683.149 kb on - strand, within PGA1_c25740 at 2683.289 kb on + strand, within PGA1_c25740 at 2683.297 kb on + strand, within PGA1_c25740 at 2683.330 kb on + strand, within PGA1_c25740 at 2683.330 kb on + strand, within PGA1_c25740 at 2683.338 kb on - strand, within PGA1_c25740 at 2683.366 kb on + strand, within PGA1_c25740 at 2683.366 kb on + strand, within PGA1_c25740 at 2683.442 kb on - strand at 2683.480 kb on + strand at 2683.501 kb on - strand at 2683.593 kb on + strand at 2683.593 kb on + strand at 2683.606 kb on - strand at 2683.609 kb on + strand at 2683.609 kb on + strand at 2683.609 kb on + strand at 2683.609 kb on + strand at 2683.609 kb on + strand at 2683.609 kb on + strand at 2683.617 kb on - strand at 2683.617 kb on - strand at 2683.617 kb on - strand at 2683.657 kb on + strand at 2683.657 kb on + strand at 2683.657 kb on + strand at 2683.657 kb on + strand at 2683.657 kb on + strand at 2683.659 kb on - strand at 2683.665 kb on - strand at 2683.665 kb on - strand at 2683.665 kb on - strand at 2683.665 kb on - strand at 2683.665 kb on - strand at 2683.687 kb on - strand at 2683.706 kb on - strand at 2683.713 kb on - strand at 2683.713 kb on - strand at 2683.713 kb on - strand at 2683.713 kb on - strand at 2683.715 kb on + strand at 2683.715 kb on + strand at 2683.723 kb on - strand at 2683.723 kb on - strand at 2683.723 kb on - strand at 2683.736 kb on - strand at 2683.752 kb on + strand at 2683.760 kb on - strand at 2683.839 kb on - strand, within PGA1_c25750 at 2683.875 kb on + strand, within PGA1_c25750 at 2683.888 kb on - strand, within PGA1_c25750 at 2683.960 kb on - strand, within PGA1_c25750 at 2684.011 kb on - strand, within PGA1_c25750 at 2684.011 kb on - strand, within PGA1_c25750 at 2684.133 kb on + strand, within PGA1_c25750 at 2684.141 kb on + strand, within PGA1_c25750 at 2684.180 kb on - strand, within PGA1_c25750 at 2684.180 kb on - strand, within PGA1_c25750 at 2684.193 kb on + strand, within PGA1_c25750 at 2684.232 kb on - strand, within PGA1_c25750 at 2684.233 kb on + strand, within PGA1_c25750 at 2684.252 kb on + strand, within PGA1_c25750 at 2684.274 kb on + strand, within PGA1_c25750 at 2684.374 kb on - strand, within PGA1_c25750 at 2684.489 kb on - strand, within PGA1_c25750 at 2684.520 kb on + strand, within PGA1_c25750 at 2684.557 kb on + strand, within PGA1_c25750 at 2684.570 kb on + strand, within PGA1_c25750 at 2684.570 kb on + strand, within PGA1_c25750 at 2684.578 kb on - strand, within PGA1_c25750 at 2684.626 kb on + strand, within PGA1_c25750 at 2684.738 kb on + strand, within PGA1_c25750 at 2684.825 kb on - strand, within PGA1_c25750 at 2684.839 kb on + strand, within PGA1_c25750 at 2684.839 kb on + strand, within PGA1_c25750 at 2684.847 kb on + strand, within PGA1_c25750 at 2684.847 kb on + strand, within PGA1_c25750 at 2684.847 kb on - strand, within PGA1_c25750 at 2684.847 kb on - strand, within PGA1_c25750 at 2684.847 kb on - strand, within PGA1_c25750 at 2684.950 kb on - strand, within PGA1_c25750 at 2684.997 kb on - strand, within PGA1_c25750 at 2685.027 kb on + strand, within PGA1_c25750 at 2685.030 kb on + strand, within PGA1_c25750 at 2685.144 kb on + strand, within PGA1_c25750 at 2685.216 kb on - strand, within PGA1_c25750 at 2685.232 kb on + strand at 2685.322 kb on + strand at 2685.330 kb on - strand at 2685.333 kb on + strand at 2685.341 kb on - strand at 2685.361 kb on - strand at 2685.361 kb on - strand at 2685.482 kb on - strand at 2685.568 kb on - strand, within PGA1_c25760 at 2685.568 kb on - strand, within PGA1_c25760 at 2685.630 kb on - strand, within PGA1_c25760 at 2685.695 kb on + strand, within PGA1_c25760 at 2685.718 kb on - strand, within PGA1_c25760 at 2685.844 kb on - strand, within PGA1_c25760 at 2685.868 kb on - strand, within PGA1_c25760 at 2685.889 kb on - strand, within PGA1_c25760 at 2685.955 kb on - strand, within PGA1_c25760 at 2685.962 kb on + strand, within PGA1_c25760 at 2685.969 kb on - strand, within PGA1_c25760 at 2686.021 kb on + strand, within PGA1_c25760 at 2686.071 kb on - strand, within PGA1_c25760 at 2686.126 kb on - strand, within PGA1_c25760 at 2686.166 kb on + strand, within PGA1_c25760 at 2686.202 kb on + strand, within PGA1_c25760 at 2686.202 kb on + strand, within PGA1_c25760 at 2686.210 kb on - strand, within PGA1_c25760 at 2686.210 kb on - strand, within PGA1_c25760 at 2686.212 kb on + strand, within PGA1_c25760 at 2686.214 kb on + strand, within PGA1_c25760 at 2686.222 kb on - strand, within PGA1_c25760 at 2686.258 kb on + strand, within PGA1_c25760 at 2686.271 kb on - strand, within PGA1_c25760
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM remove 2,682,771 - PGA1_c25740 0.68 -2.4 2,682,845 + PGA1_c25740 0.71 +1.0 2,682,885 - PGA1_c25740 0.72 +1.3 2,682,903 - PGA1_c25740 0.73 +1.5 2,682,918 - PGA1_c25740 0.73 +1.0 2,682,918 - PGA1_c25740 0.73 +1.3 2,682,960 - PGA1_c25740 0.75 -0.1 2,683,149 - PGA1_c25740 0.82 +0.1 2,683,289 + PGA1_c25740 0.87 -1.2 2,683,297 + PGA1_c25740 0.87 +0.2 2,683,330 + PGA1_c25740 0.88 +0.5 2,683,330 + PGA1_c25740 0.88 +0.0 2,683,338 - PGA1_c25740 0.89 +1.1 2,683,366 + PGA1_c25740 0.90 +1.0 2,683,366 + PGA1_c25740 0.90 -0.4 2,683,442 - +1.2 2,683,480 + +1.8 2,683,501 - -0.4 2,683,593 + +1.5 2,683,593 + -1.5 2,683,606 - -2.2 2,683,609 + +0.8 2,683,609 + +1.4 2,683,609 + -0.1 2,683,609 + +1.9 2,683,609 + -0.4 2,683,609 + +1.6 2,683,617 - +1.0 2,683,617 - +0.6 2,683,617 - +1.3 2,683,657 + -1.2 2,683,657 + +0.3 2,683,657 + -0.4 2,683,657 + +1.5 2,683,657 + +3.2 2,683,659 - -1.1 2,683,665 - -0.8 2,683,665 - -0.7 2,683,665 - +0.3 2,683,665 - +1.5 2,683,665 - +1.3 2,683,687 - -0.2 2,683,706 - -0.0 2,683,713 - +1.1 2,683,713 - +0.9 2,683,713 - -1.9 2,683,713 - -2.9 2,683,715 + -0.8 2,683,715 + +0.3 2,683,723 - +0.5 2,683,723 - +0.4 2,683,723 - -3.0 2,683,736 - +1.8 2,683,752 + -0.5 2,683,760 - -0.2 2,683,839 - PGA1_c25750 0.10 +1.7 2,683,875 + PGA1_c25750 0.12 +0.6 2,683,888 - PGA1_c25750 0.13 -0.6 2,683,960 - PGA1_c25750 0.17 +0.8 2,684,011 - PGA1_c25750 0.20 +1.5 2,684,011 - PGA1_c25750 0.20 +2.7 2,684,133 + PGA1_c25750 0.27 +0.2 2,684,141 + PGA1_c25750 0.28 +1.3 2,684,180 - PGA1_c25750 0.30 +1.1 2,684,180 - PGA1_c25750 0.30 +0.7 2,684,193 + PGA1_c25750 0.31 +1.8 2,684,232 - PGA1_c25750 0.33 +1.9 2,684,233 + PGA1_c25750 0.33 -2.1 2,684,252 + PGA1_c25750 0.34 -3.4 2,684,274 + PGA1_c25750 0.36 +0.4 2,684,374 - PGA1_c25750 0.41 +2.3 2,684,489 - PGA1_c25750 0.48 +1.8 2,684,520 + PGA1_c25750 0.50 +2.7 2,684,557 + PGA1_c25750 0.52 +1.0 2,684,570 + PGA1_c25750 0.53 -0.9 2,684,570 + PGA1_c25750 0.53 +2.2 2,684,578 - PGA1_c25750 0.53 -1.1 2,684,626 + PGA1_c25750 0.56 +3.2 2,684,738 + PGA1_c25750 0.62 -0.5 2,684,825 - PGA1_c25750 0.67 -0.9 2,684,839 + PGA1_c25750 0.68 +1.0 2,684,839 + PGA1_c25750 0.68 +1.5 2,684,847 + PGA1_c25750 0.69 +0.5 2,684,847 + PGA1_c25750 0.69 +0.4 2,684,847 - PGA1_c25750 0.69 +0.9 2,684,847 - PGA1_c25750 0.69 +0.6 2,684,847 - PGA1_c25750 0.69 -0.6 2,684,950 - PGA1_c25750 0.75 +1.3 2,684,997 - PGA1_c25750 0.77 +1.0 2,685,027 + PGA1_c25750 0.79 -1.7 2,685,030 + PGA1_c25750 0.79 +1.3 2,685,144 + PGA1_c25750 0.86 +1.8 2,685,216 - PGA1_c25750 0.90 +1.8 2,685,232 + +0.7 2,685,322 + -0.3 2,685,330 - +0.9 2,685,333 + +1.0 2,685,341 - +2.5 2,685,361 - +0.9 2,685,361 - +0.9 2,685,482 - +0.1 2,685,568 - PGA1_c25760 0.13 +0.6 2,685,568 - PGA1_c25760 0.13 +1.2 2,685,630 - PGA1_c25760 0.19 +0.9 2,685,695 + PGA1_c25760 0.26 +0.9 2,685,718 - PGA1_c25760 0.28 +1.3 2,685,844 - PGA1_c25760 0.41 +0.7 2,685,868 - PGA1_c25760 0.44 -1.7 2,685,889 - PGA1_c25760 0.46 +0.7 2,685,955 - PGA1_c25760 0.53 +0.3 2,685,962 + PGA1_c25760 0.53 -0.9 2,685,969 - PGA1_c25760 0.54 +2.3 2,686,021 + PGA1_c25760 0.59 -1.5 2,686,071 - PGA1_c25760 0.64 -0.2 2,686,126 - PGA1_c25760 0.70 -0.8 2,686,166 + PGA1_c25760 0.74 +0.4 2,686,202 + PGA1_c25760 0.78 +1.3 2,686,202 + PGA1_c25760 0.78 -0.5 2,686,210 - PGA1_c25760 0.79 +1.3 2,686,210 - PGA1_c25760 0.79 +0.4 2,686,212 + PGA1_c25760 0.79 -0.7 2,686,214 + PGA1_c25760 0.79 +0.3 2,686,222 - PGA1_c25760 0.80 -3.2 2,686,258 + PGA1_c25760 0.84 -0.8 2,686,271 - PGA1_c25760 0.85 +1.3
Or see this region's nucleotide sequence