Strain Fitness in Marinobacter adhaerens HP15 around HP15_2419

Experiment: m.b. acetate 87.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2418 and HP15_2419 are separated by 89 nucleotidesHP15_2419 and HP15_2420 are separated by 892 nucleotides HP15_2418: HP15_2418 - conserved hypothetical protein, at 2,553,325 to 2,555,457 _2418 HP15_2419: HP15_2419 - bax protein, at 2,555,547 to 2,556,482 _2419 HP15_2420: HP15_2420 - regulatory protein, LuxR, at 2,557,375 to 2,560,077 _2420 Position (kb) 2555 2556 2557Strain fitness (log2 ratio) -1 0 1at 2554.550 kb on - strand, within HP15_2418at 2554.552 kb on + strand, within HP15_2418at 2554.609 kb on - strand, within HP15_2418at 2554.681 kb on - strand, within HP15_2418at 2554.743 kb on - strand, within HP15_2418at 2554.792 kb on - strand, within HP15_2418at 2554.795 kb on + strand, within HP15_2418at 2554.870 kb on + strand, within HP15_2418at 2554.999 kb on + strand, within HP15_2418at 2555.093 kb on + strand, within HP15_2418at 2555.111 kb on - strand, within HP15_2418at 2555.189 kb on + strand, within HP15_2418at 2555.318 kb on + strandat 2555.427 kb on - strandat 2555.541 kb on + strandat 2555.632 kb on + strandat 2555.632 kb on + strandat 2555.640 kb on - strandat 2555.793 kb on + strand, within HP15_2419at 2555.842 kb on - strand, within HP15_2419at 2555.855 kb on - strand, within HP15_2419at 2555.990 kb on + strand, within HP15_2419at 2556.065 kb on - strand, within HP15_2419at 2556.182 kb on - strand, within HP15_2419at 2556.252 kb on + strand, within HP15_2419at 2556.260 kb on - strand, within HP15_2419at 2556.277 kb on - strand, within HP15_2419at 2556.397 kb on + strandat 2556.456 kb on - strandat 2556.493 kb on - strandat 2556.516 kb on + strandat 2556.594 kb on - strandat 2556.704 kb on + strandat 2556.707 kb on - strandat 2556.761 kb on - strandat 2556.813 kb on + strandat 2557.097 kb on + strandat 2557.381 kb on - strandat 2557.381 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 87.5 mM
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2,554,550 - HP15_2418 0.57 +0.8
2,554,552 + HP15_2418 0.58 +0.9
2,554,609 - HP15_2418 0.60 -0.4
2,554,681 - HP15_2418 0.64 -0.7
2,554,743 - HP15_2418 0.66 -0.2
2,554,792 - HP15_2418 0.69 -1.1
2,554,795 + HP15_2418 0.69 -0.3
2,554,870 + HP15_2418 0.72 -0.1
2,554,999 + HP15_2418 0.78 -0.6
2,555,093 + HP15_2418 0.83 -0.2
2,555,111 - HP15_2418 0.84 +1.1
2,555,189 + HP15_2418 0.87 +1.6
2,555,318 + -0.2
2,555,427 - +1.4
2,555,541 + -0.0
2,555,632 + -0.2
2,555,632 + +0.3
2,555,640 - -0.1
2,555,793 + HP15_2419 0.26 -0.0
2,555,842 - HP15_2419 0.32 -1.1
2,555,855 - HP15_2419 0.33 +0.3
2,555,990 + HP15_2419 0.47 -0.5
2,556,065 - HP15_2419 0.55 +1.1
2,556,182 - HP15_2419 0.68 -0.3
2,556,252 + HP15_2419 0.75 +0.4
2,556,260 - HP15_2419 0.76 -0.6
2,556,277 - HP15_2419 0.78 +1.4
2,556,397 + -0.2
2,556,456 - -0.2
2,556,493 - -0.6
2,556,516 + +0.7
2,556,594 - +0.7
2,556,704 + +0.5
2,556,707 - -0.2
2,556,761 - +0.9
2,556,813 + -0.3
2,557,097 + -0.3
2,557,381 - -1.0
2,557,381 - -0.2

Or see this region's nucleotide sequence