Experiment: m.b. acetate 87.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2418 and HP15_2419 are separated by 89 nucleotides HP15_2419 and HP15_2420 are separated by 892 nucleotides
HP15_2418: HP15_2418 - conserved hypothetical protein, at 2,553,325 to 2,555,457
_2418
HP15_2419: HP15_2419 - bax protein, at 2,555,547 to 2,556,482
_2419
HP15_2420: HP15_2420 - regulatory protein, LuxR, at 2,557,375 to 2,560,077
_2420
Position (kb)
2555
2556
2557 Strain fitness (log2 ratio)
-1
0
1 at 2554.550 kb on - strand, within HP15_2418 at 2554.552 kb on + strand, within HP15_2418 at 2554.609 kb on - strand, within HP15_2418 at 2554.681 kb on - strand, within HP15_2418 at 2554.743 kb on - strand, within HP15_2418 at 2554.792 kb on - strand, within HP15_2418 at 2554.795 kb on + strand, within HP15_2418 at 2554.870 kb on + strand, within HP15_2418 at 2554.999 kb on + strand, within HP15_2418 at 2555.093 kb on + strand, within HP15_2418 at 2555.111 kb on - strand, within HP15_2418 at 2555.189 kb on + strand, within HP15_2418 at 2555.318 kb on + strand at 2555.427 kb on - strand at 2555.541 kb on + strand at 2555.632 kb on + strand at 2555.632 kb on + strand at 2555.640 kb on - strand at 2555.793 kb on + strand, within HP15_2419 at 2555.842 kb on - strand, within HP15_2419 at 2555.855 kb on - strand, within HP15_2419 at 2555.990 kb on + strand, within HP15_2419 at 2556.065 kb on - strand, within HP15_2419 at 2556.182 kb on - strand, within HP15_2419 at 2556.252 kb on + strand, within HP15_2419 at 2556.260 kb on - strand, within HP15_2419 at 2556.277 kb on - strand, within HP15_2419 at 2556.397 kb on + strand at 2556.456 kb on - strand at 2556.493 kb on - strand at 2556.516 kb on + strand at 2556.594 kb on - strand at 2556.704 kb on + strand at 2556.707 kb on - strand at 2556.761 kb on - strand at 2556.813 kb on + strand at 2557.097 kb on + strand at 2557.381 kb on - strand at 2557.381 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 87.5 mM remove 2,554,550 - HP15_2418 0.57 +0.8 2,554,552 + HP15_2418 0.58 +0.9 2,554,609 - HP15_2418 0.60 -0.4 2,554,681 - HP15_2418 0.64 -0.7 2,554,743 - HP15_2418 0.66 -0.2 2,554,792 - HP15_2418 0.69 -1.1 2,554,795 + HP15_2418 0.69 -0.3 2,554,870 + HP15_2418 0.72 -0.1 2,554,999 + HP15_2418 0.78 -0.6 2,555,093 + HP15_2418 0.83 -0.2 2,555,111 - HP15_2418 0.84 +1.1 2,555,189 + HP15_2418 0.87 +1.6 2,555,318 + -0.2 2,555,427 - +1.4 2,555,541 + -0.0 2,555,632 + -0.2 2,555,632 + +0.3 2,555,640 - -0.1 2,555,793 + HP15_2419 0.26 -0.0 2,555,842 - HP15_2419 0.32 -1.1 2,555,855 - HP15_2419 0.33 +0.3 2,555,990 + HP15_2419 0.47 -0.5 2,556,065 - HP15_2419 0.55 +1.1 2,556,182 - HP15_2419 0.68 -0.3 2,556,252 + HP15_2419 0.75 +0.4 2,556,260 - HP15_2419 0.76 -0.6 2,556,277 - HP15_2419 0.78 +1.4 2,556,397 + -0.2 2,556,456 - -0.2 2,556,493 - -0.6 2,556,516 + +0.7 2,556,594 - +0.7 2,556,704 + +0.5 2,556,707 - -0.2 2,556,761 - +0.9 2,556,813 + -0.3 2,557,097 + -0.3 2,557,381 - -1.0 2,557,381 - -0.2
Or see this region's nucleotide sequence