Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c23040

Experiment: m.b. nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 6 mM
2,386,874	-		PGA1_c23030	0.71	+0.8
2,386,881	-		PGA1_c23030	0.72	+1.8
2,386,890	+		PGA1_c23030	0.73	-0.5
2,386,895	+		PGA1_c23030	0.73	+0.9
2,386,895	+		PGA1_c23030	0.73	+1.1
2,386,903	-		PGA1_c23030	0.74	-0.5
2,386,903	-		PGA1_c23030	0.74	+0.4
2,386,903	-		PGA1_c23030	0.74	+1.3
2,386,915	-		PGA1_c23030	0.76	+2.6
2,387,004	-		PGA1_c23030	0.86	+0.2
2,387,046	-				+0.7
2,387,052	+				-2.8
2,387,068	+				-1.7
2,387,076	-				-0.6
2,387,076	-				+1.2
2,387,119	-				-0.4
2,387,182	+				-0.1
2,387,188	+				+0.0
2,387,195	-				+0.2
2,387,202	+				+1.6
2,387,241	+				+0.2
2,387,241	+				+0.1
2,387,241	+				-0.7
2,387,241	+				+0.5
2,387,241	+				+1.0
2,387,241	+				+0.5
2,387,241	+				-1.1
2,387,241	+				-1.5
2,387,241	+				-2.7
2,387,249	-				+1.2
2,387,249	-				-2.0
2,387,249	-				+0.5
2,387,249	-				-0.6
2,387,249	-				+0.5
2,387,258	+				+0.2
2,387,259	-				-0.8
2,387,260	-				-0.1
2,387,265	+				+0.2
2,387,270	+				+1.3
2,387,270	+				+0.3
2,387,270	+				-2.7
2,387,270	+				-0.0
2,387,270	+				-2.4
2,387,270	+				+0.5
2,387,270	+				+0.7
2,387,270	+				-0.2
2,387,270	+				+1.4
2,387,270	+				+2.6
2,387,270	+				+0.8
2,387,275	+				-0.7
2,387,275	+				+0.2
2,387,275	+				+2.6
2,387,275	+				+0.3
2,387,275	+				-3.5
2,387,275	+				+1.3
2,387,275	+				+1.9
2,387,278	-				+0.8
2,387,278	-				-2.1
2,387,278	-				-1.1
2,387,280	-				-1.2
2,387,356	-				-1.7
2,387,357	-				+0.5
2,387,358	-				-0.4
2,387,399	+				-0.3
2,387,400	+				-0.4
2,387,400	+				+1.4
2,387,400	+				+0.1
2,387,400	+				+0.7
2,387,408	-				+0.2
2,387,408	-				-1.9
2,387,408	-				+2.1
2,387,408	-				+0.4
2,387,408	-				+1.5
2,387,408	-				-0.4
2,387,408	-				+0.1
2,387,429	-				+0.3
2,387,461	+				-1.8
2,387,461	+				-1.2
2,387,469	-				-1.9
2,387,469	-				+0.7
2,387,476	+				+1.0
2,387,476	+				+1.9
2,387,484	-				-2.7
2,387,484	-				-0.6
2,387,484	-				-0.6
2,387,484	-				-1.4
2,387,484	-				+1.0
2,387,484	-				+0.1
2,387,484	-				+0.2
2,387,484	-				-0.9
2,387,494	+				+0.5
2,387,535	+				-0.9
2,387,601	+				-1.0
2,387,609	-				-1.0
2,387,624	-				+1.2
2,387,626	+				-0.5
2,387,689	-				-0.6
2,387,725	+				+1.6
2,387,725	+				-1.7
2,387,743	-				+1.3
2,387,788	-				+1.8
2,387,788	-				+0.9
2,387,792	+				-2.4
2,387,793	-				-0.5
2,387,829	+				+0.1
2,387,847	+				+0.1
2,387,849	+				+0.7
2,387,855	-				-0.1
2,387,864	+				-0.0
2,387,872	-				+1.0
2,387,898	-				+2.1
2,387,941	-				+1.4
2,387,956	-		PGA1_c23040	0.12	+0.5
2,387,973	-		PGA1_c23040	0.14	+0.1
2,387,975	-		PGA1_c23040	0.14	-2.3
2,387,975	-		PGA1_c23040	0.14	-1.4
2,388,003	+		PGA1_c23040	0.18	-1.5
2,388,012	+		PGA1_c23040	0.20	-0.4
2,388,023	+		PGA1_c23040	0.21	+0.8
2,388,023	+		PGA1_c23040	0.21	-2.9
2,388,031	+		PGA1_c23040	0.22	-0.0
2,388,075	+		PGA1_c23040	0.29	-0.8
2,388,133	+		PGA1_c23040	0.37	-3.1
2,388,140	-		PGA1_c23040	0.38	+1.5
2,388,216	+		PGA1_c23040	0.49	-1.3
2,388,224	-		PGA1_c23040	0.50	-1.9
2,388,303	+		PGA1_c23040	0.61	+0.3
2,388,303	+		PGA1_c23040	0.61	+0.1
2,388,311	+		PGA1_c23040	0.62	-2.6
2,388,331	+		PGA1_c23040	0.65	+0.2
2,388,331	+		PGA1_c23040	0.65	+0.1
2,388,358	-		PGA1_c23040	0.69	-0.2
2,388,395	-		PGA1_c23040	0.74	-0.5
2,388,482	+		PGA1_c23040	0.86	+0.3
2,388,513	+				+0.3
2,388,513	+				-1.7
2,388,544	-				-1.2
2,388,556	+				-0.2
2,388,566	+				+0.4
2,388,572	-				-0.9
2,388,572	-				-3.5
2,388,599	+				-2.6
2,388,607	-				-1.6
2,388,627	+				-0.0
2,388,635	-				+0.8
2,388,666	+		PGA1_c23050	0.10	+0.8
2,388,676	-		PGA1_c23050	0.12	-1.2
2,388,818	+		PGA1_c23050	0.28	+0.4
2,388,914	+		PGA1_c23050	0.39	+0.3
2,388,946	-		PGA1_c23050	0.43	+0.2
2,388,978	-		PGA1_c23050	0.46	-0.1
2,389,075	+		PGA1_c23050	0.58	+0.0
2,389,083	-		PGA1_c23050	0.59	-1.0
2,389,145	-		PGA1_c23050	0.66	+1.3
2,389,145	-		PGA1_c23050	0.66	+0.3
2,389,147	+		PGA1_c23050	0.66	-0.2
2,389,147	+		PGA1_c23050	0.66	+0.9
2,389,147	+		PGA1_c23050	0.66	-0.9
2,389,155	-		PGA1_c23050	0.67	-0.2
2,389,155	-		PGA1_c23050	0.67	+0.6
2,389,157	+		PGA1_c23050	0.67	-0.4
2,389,336	-		PGA1_c23050	0.88	-0.5
2,389,336	-		PGA1_c23050	0.88	+1.4
2,389,375	-				-1.6
2,389,494	-				-1.0
2,389,533	-				-1.3
2,389,544	+				-0.6
2,389,548	-				+0.4
2,389,559	+				+1.5
2,389,567	-				+1.4
2,389,572	+				+1.3