Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c20970

Experiment: m.b. nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 6 mM
2,174,177	-		PGA1_c20960	0.50	-1.8
2,174,187	-		PGA1_c20960	0.51	-0.7
2,174,197	+		PGA1_c20960	0.53	+2.2
2,174,215	-		PGA1_c20960	0.55	+0.8
2,174,239	-		PGA1_c20960	0.57	+0.0
2,174,244	+		PGA1_c20960	0.58	+0.4
2,174,298	+		PGA1_c20960	0.64	-0.4
2,174,306	-		PGA1_c20960	0.65	-1.6
2,174,314	-		PGA1_c20960	0.66	-1.0
2,174,374	-		PGA1_c20960	0.72	+1.0
2,174,424	+		PGA1_c20960	0.78	-0.0
2,174,502	+		PGA1_c20960	0.87	+1.4
2,174,587	+				+1.0
2,174,587	+				-0.5
2,174,590	-				+2.4
2,174,590	-				+0.0
2,174,590	-				+0.3
2,174,592	+				+1.0
2,174,595	-				-1.0
2,174,595	-				+0.0
2,174,597	+				-0.1
2,174,597	+				+0.4
2,174,600	-				-2.3
2,174,687	+				-1.2
2,174,761	-				+1.3
2,174,761	-				+1.9
2,174,804	+				-1.3
2,174,809	+				+0.4
2,174,817	-				-0.1
2,174,829	+				+0.5
2,174,894	+				-0.4
2,174,928	+				+0.9
2,174,928	+				+0.0
2,174,936	-				+1.6
2,174,936	-				-0.5
2,175,036	+				-1.5
2,175,036	+				-1.3
2,175,036	+				+0.0
2,175,036	+				-2.1
2,175,036	+				+1.6
2,175,036	+				-1.0
2,175,036	+				-0.5
2,175,036	+				-1.2
2,175,036	+				+1.0
2,175,044	-				-0.1
2,175,044	-				+0.4
2,175,044	-				+2.5
2,175,044	-				+0.2
2,175,044	-				-0.6
2,175,044	-				-2.2
2,175,100	-				-1.0
2,175,168	-				+0.9
2,175,188	-				+0.7
2,175,201	+				+0.2
2,175,241	-				-1.0
2,175,279	-		PGA1_c20970	0.13	+0.6
2,175,279	-		PGA1_c20970	0.13	+0.8
2,175,279	-		PGA1_c20970	0.13	-0.5
2,175,368	-		PGA1_c20970	0.25	+1.6
2,175,393	-		PGA1_c20970	0.28	+0.3
2,175,397	-		PGA1_c20970	0.29	+1.3
2,175,415	-		PGA1_c20970	0.31	+1.5
2,175,425	-		PGA1_c20970	0.32	+0.8
2,175,451	+		PGA1_c20970	0.36	-2.4
2,175,459	-		PGA1_c20970	0.37	+2.0
2,175,459	-		PGA1_c20970	0.37	-1.4
2,175,461	+		PGA1_c20970	0.37	+0.7
2,175,469	-		PGA1_c20970	0.38	+0.7
2,175,598	+		PGA1_c20970	0.54	+1.3
2,175,604	-		PGA1_c20970	0.55	+0.9
2,175,710	+		PGA1_c20970	0.69	+0.8
2,175,749	-		PGA1_c20970	0.74	+1.0
2,175,830	+		PGA1_c20970	0.84	+0.2
2,175,883	-				+1.2
2,175,894	+				+1.5
2,175,902	-				+1.9
2,175,920	+				-0.5
2,175,920	+				+0.3
2,175,954	+				+0.7
2,175,959	+				+1.7
2,175,962	-				+1.0
2,176,014	+				-0.4
2,176,037	+				+1.5
2,176,042	+				+0.5
2,176,048	+				+2.6
2,176,051	-				-1.3
2,176,051	-				+0.7
2,176,133	-				+2.2
2,176,146	+				+0.0
2,176,153	-				+1.2
2,176,154	-				+0.4
2,176,162	+				-0.4
2,176,164	+				+0.5
2,176,201	+				+2.9
2,176,202	-				+0.5
2,176,202	-				+1.3
2,176,202	-				+1.2
2,176,209	-				+2.6
2,176,258	+				+1.6
2,176,259	+				+0.0
2,176,260	+				+0.4
2,176,266	-				-0.5
2,176,288	-				+1.6
2,176,339	+		PGA1_c20980	0.14	+0.3
2,176,339	+		PGA1_c20980	0.14	+0.7
2,176,339	+		PGA1_c20980	0.14	+1.0
2,176,339	+		PGA1_c20980	0.14	-2.5
2,176,347	-		PGA1_c20980	0.15	+1.5
2,176,352	-		PGA1_c20980	0.15	-0.8
2,176,354	+		PGA1_c20980	0.16	-0.5
2,176,362	-		PGA1_c20980	0.16	+0.5
2,176,391	+		PGA1_c20980	0.19	+0.2
2,176,443	-		PGA1_c20980	0.24	+1.5
2,176,449	+		PGA1_c20980	0.25	+0.0
2,176,460	+		PGA1_c20980	0.26	-0.3
2,176,468	-		PGA1_c20980	0.27	-1.5
2,176,490	+		PGA1_c20980	0.29	-2.1
2,176,549	+		PGA1_c20980	0.35	-1.1
2,176,549	+		PGA1_c20980	0.35	+0.6
2,176,591	+		PGA1_c20980	0.39	+0.3
2,176,591	+		PGA1_c20980	0.39	+1.0
2,176,591	+		PGA1_c20980	0.39	-1.5
2,176,591	+		PGA1_c20980	0.39	+0.6
2,176,591	+		PGA1_c20980	0.39	+2.3
2,176,591	+		PGA1_c20980	0.39	-0.9
2,176,591	+		PGA1_c20980	0.39	-0.2
2,176,591	+		PGA1_c20980	0.39	-1.5
2,176,591	+		PGA1_c20980	0.39	-1.3
2,176,599	-		PGA1_c20980	0.40	-2.5
2,176,599	-		PGA1_c20980	0.40	+0.5
2,176,599	-		PGA1_c20980	0.40	+1.0
2,176,606	-		PGA1_c20980	0.41	-3.3
2,176,613	-		PGA1_c20980	0.41	-1.1
2,176,615	+		PGA1_c20980	0.42	+2.5
2,176,615	+		PGA1_c20980	0.42	+0.5
2,176,615	+		PGA1_c20980	0.42	-2.8
2,176,615	+		PGA1_c20980	0.42	-0.4
2,176,615	+		PGA1_c20980	0.42	+0.7
2,176,615	+		PGA1_c20980	0.42	+1.7
2,176,615	+		PGA1_c20980	0.42	-1.5
2,176,615	+		PGA1_c20980	0.42	+0.7
2,176,615	+		PGA1_c20980	0.42	-1.0
2,176,623	-		PGA1_c20980	0.42	+1.0
2,176,623	-		PGA1_c20980	0.42	-1.5
2,176,623	-		PGA1_c20980	0.42	-0.3
2,176,633	+		PGA1_c20980	0.43	-0.7
2,176,642	-		PGA1_c20980	0.44	+1.2
2,176,658	-		PGA1_c20980	0.46	+1.6
2,176,678	+		PGA1_c20980	0.48	+1.0
2,176,686	-		PGA1_c20980	0.49	-0.1
2,176,698	-		PGA1_c20980	0.50	-0.4
2,176,703	-		PGA1_c20980	0.50	-0.5
2,176,713	-		PGA1_c20980	0.51	-1.3
2,176,758	-		PGA1_c20980	0.56	-0.2
2,176,760	+		PGA1_c20980	0.56	+1.7
2,176,760	+		PGA1_c20980	0.56	+0.4
2,176,760	+		PGA1_c20980	0.56	+0.0
2,176,798	+		PGA1_c20980	0.60	+2.5
2,176,866	+		PGA1_c20980	0.67	-0.4
2,176,930	-		PGA1_c20980	0.73	+0.4