Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c18140

Experiment: m.b. nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 6 mM
1,890,297	-				-0.1
1,890,327	-				-1.0
1,890,453	-				+0.3
1,890,500	-				-1.8
1,890,507	-				-0.5
1,890,583	+				+0.9
1,890,729	-		PGA1_c18130	0.23	+0.4
1,890,784	-		PGA1_c18130	0.35	+1.9
1,890,785	-		PGA1_c18130	0.35	-1.3
1,890,834	+		PGA1_c18130	0.46	+0.0
1,890,857	+		PGA1_c18130	0.51	-1.9
1,890,924	-		PGA1_c18130	0.65	-1.7
1,891,075	+				+0.0
1,891,287	-				-0.8
1,891,287	-				-0.8
1,891,287	-				+1.1
1,891,288	+				+0.8
1,891,328	-				-0.1
1,891,328	-				-0.4
1,891,335	+				-1.2
1,891,368	+				+0.8
1,891,423	-				+0.4
1,891,500	+		PGA1_c18140	0.13	+0.6
1,891,522	+		PGA1_c18140	0.14	-2.6
1,891,566	-		PGA1_c18140	0.17	+0.5
1,891,711	+		PGA1_c18140	0.24	+1.4
1,891,711	+		PGA1_c18140	0.24	+1.3
1,891,729	+		PGA1_c18140	0.25	-0.2
1,891,737	-		PGA1_c18140	0.25	+1.9
1,891,737	-		PGA1_c18140	0.25	-2.7
1,891,865	+		PGA1_c18140	0.32	-3.0
1,891,878	-		PGA1_c18140	0.33	-0.1
1,891,914	-		PGA1_c18140	0.34	+1.7
1,892,025	+		PGA1_c18140	0.40	+0.7
1,892,061	+		PGA1_c18140	0.42	-0.7
1,892,069	-		PGA1_c18140	0.42	+0.8
1,892,069	-		PGA1_c18140	0.42	+2.9
1,892,172	+		PGA1_c18140	0.48	+2.0
1,892,230	+		PGA1_c18140	0.51	-0.2
1,892,293	-		PGA1_c18140	0.54	+2.2
1,892,306	+		PGA1_c18140	0.54	+0.8
1,892,371	-		PGA1_c18140	0.58	+1.0
1,892,453	-		PGA1_c18140	0.62	+1.8
1,892,516	+		PGA1_c18140	0.65	+1.6
1,892,546	+		PGA1_c18140	0.67	+2.4
1,892,546	+		PGA1_c18140	0.67	+1.0
1,892,546	+		PGA1_c18140	0.67	+1.3
1,892,546	+		PGA1_c18140	0.67	+0.0
1,892,546	+		PGA1_c18140	0.67	+0.1
1,892,546	+		PGA1_c18140	0.67	+0.0
1,892,554	-		PGA1_c18140	0.67	+0.8
1,892,554	-		PGA1_c18140	0.67	+0.7
1,892,554	-		PGA1_c18140	0.67	+0.4
1,892,561	+		PGA1_c18140	0.67	+0.4
1,892,561	+		PGA1_c18140	0.67	+0.2
1,892,648	+		PGA1_c18140	0.72	+0.4
1,892,648	+		PGA1_c18140	0.72	-0.7
1,892,648	+		PGA1_c18140	0.72	+1.5
1,892,656	-		PGA1_c18140	0.72	+2.8
1,892,656	-		PGA1_c18140	0.72	-2.6
1,892,656	-		PGA1_c18140	0.72	-0.1
1,892,709	+		PGA1_c18140	0.75	-0.7
1,892,720	+		PGA1_c18140	0.76	-0.9
1,892,746	+		PGA1_c18140	0.77	+1.0
1,892,802	-		PGA1_c18140	0.80	+0.3
1,893,033	-				+1.2
1,893,033	-				-1.0
1,893,076	+				-0.9
1,893,159	+				-0.1
1,893,161	-				+0.8
1,893,161	-				-0.3
1,893,273	-				-1.3
1,893,429	+				-1.3
1,893,437	-				+0.0
1,893,460	+				-1.2
1,893,556	+				-4.1
1,893,582	+				+2.0
1,893,582	+				-0.6
1,893,629	+		PGA1_c18150	0.10	-1.5
1,893,640	+		PGA1_c18150	0.11	+1.9
1,893,663	-		PGA1_c18150	0.13	-2.3
1,893,665	+		PGA1_c18150	0.13	+1.6
1,893,668	-		PGA1_c18150	0.14	+0.4
1,893,676	-		PGA1_c18150	0.14	-2.4
1,893,678	-		PGA1_c18150	0.14	+0.4
1,893,747	-		PGA1_c18150	0.20	+1.0
1,893,765	-		PGA1_c18150	0.21	+2.1
1,893,853	-		PGA1_c18150	0.28	+0.8
1,893,871	+		PGA1_c18150	0.30	+2.3
1,893,879	-		PGA1_c18150	0.30	+0.7
1,893,879	-		PGA1_c18150	0.30	-1.0
1,893,902	-		PGA1_c18150	0.32	+0.1
1,893,927	+		PGA1_c18150	0.34	+2.7
1,893,929	+		PGA1_c18150	0.34	+1.9
1,893,934	+		PGA1_c18150	0.35	-0.8
1,893,958	-		PGA1_c18150	0.36	+0.0
1,894,010	+		PGA1_c18150	0.41	+0.4
1,894,018	-		PGA1_c18150	0.41	-1.6
1,894,024	-		PGA1_c18150	0.42	-2.3
1,894,028	-		PGA1_c18150	0.42	-2.5
1,894,028	-		PGA1_c18150	0.42	-1.9
1,894,028	-		PGA1_c18150	0.42	+0.7
1,894,061	+		PGA1_c18150	0.45	+0.0
1,894,150	+		PGA1_c18150	0.52	+0.5