Experiment: m.b. acetate 87.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1416 and HP15_1417 are separated by 81 nucleotides HP15_1417 and HP15_1418 are separated by 22 nucleotides
HP15_1416: HP15_1416 - L-carnitine dehydratase/bile acid-inducible protein F, at 1,498,187 to 1,499,392
_1416
HP15_1417: HP15_1417 - ABC transporter, ATP-binding protein, at 1,499,474 to 1,500,211
_1417
HP15_1418: HP15_1418 - membrane protein containing DUF214, permase predicted, at 1,500,234 to 1,502,768
_1418
Position (kb)
1499
1500
1501 Strain fitness (log2 ratio)
-2
-1
0
1 at 1498.575 kb on + strand, within HP15_1416 at 1498.646 kb on + strand, within HP15_1416 at 1498.792 kb on + strand, within HP15_1416 at 1498.846 kb on - strand, within HP15_1416 at 1498.937 kb on - strand, within HP15_1416 at 1499.084 kb on - strand, within HP15_1416 at 1499.216 kb on + strand, within HP15_1416 at 1499.502 kb on + strand at 1499.655 kb on + strand, within HP15_1417 at 1499.839 kb on + strand, within HP15_1417 at 1499.917 kb on + strand, within HP15_1417 at 1499.939 kb on - strand, within HP15_1417 at 1499.950 kb on + strand, within HP15_1417 at 1499.950 kb on + strand, within HP15_1417 at 1499.963 kb on - strand, within HP15_1417 at 1499.997 kb on - strand, within HP15_1417 at 1500.080 kb on + strand, within HP15_1417 at 1500.112 kb on + strand, within HP15_1417 at 1500.138 kb on + strand at 1500.146 kb on - strand at 1500.146 kb on - strand at 1500.146 kb on - strand at 1500.204 kb on - strand at 1500.217 kb on + strand at 1500.224 kb on - strand at 1500.315 kb on + strand at 1500.349 kb on - strand at 1500.533 kb on + strand, within HP15_1418 at 1500.568 kb on - strand, within HP15_1418 at 1500.821 kb on - strand, within HP15_1418 at 1500.987 kb on + strand, within HP15_1418 at 1500.987 kb on + strand, within HP15_1418 at 1501.058 kb on + strand, within HP15_1418 at 1501.096 kb on + strand, within HP15_1418 at 1501.104 kb on - strand, within HP15_1418 at 1501.159 kb on + strand, within HP15_1418 at 1501.189 kb on + strand, within HP15_1418
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 87.5 mM remove 1,498,575 + HP15_1416 0.32 +0.6 1,498,646 + HP15_1416 0.38 -0.1 1,498,792 + HP15_1416 0.50 +0.0 1,498,846 - HP15_1416 0.55 +0.9 1,498,937 - HP15_1416 0.62 +1.4 1,499,084 - HP15_1416 0.74 +0.3 1,499,216 + HP15_1416 0.85 -0.4 1,499,502 + +0.1 1,499,655 + HP15_1417 0.25 +1.0 1,499,839 + HP15_1417 0.49 +0.2 1,499,917 + HP15_1417 0.60 -0.0 1,499,939 - HP15_1417 0.63 +1.0 1,499,950 + HP15_1417 0.64 +0.2 1,499,950 + HP15_1417 0.64 +0.2 1,499,963 - HP15_1417 0.66 +0.4 1,499,997 - HP15_1417 0.71 -0.0 1,500,080 + HP15_1417 0.82 +1.3 1,500,112 + HP15_1417 0.86 +0.3 1,500,138 + +0.9 1,500,146 - +0.2 1,500,146 - -2.2 1,500,146 - -0.9 1,500,204 - -0.8 1,500,217 + +0.6 1,500,224 - -0.4 1,500,315 + +0.6 1,500,349 - +0.9 1,500,533 + HP15_1418 0.12 +0.1 1,500,568 - HP15_1418 0.13 -0.2 1,500,821 - HP15_1418 0.23 +0.3 1,500,987 + HP15_1418 0.30 +0.3 1,500,987 + HP15_1418 0.30 -0.0 1,501,058 + HP15_1418 0.33 +0.1 1,501,096 + HP15_1418 0.34 +0.9 1,501,104 - HP15_1418 0.34 +0.2 1,501,159 + HP15_1418 0.36 -0.5 1,501,189 + HP15_1418 0.38 -0.8
Or see this region's nucleotide sequence