Strain Fitness in Marinobacter adhaerens HP15 around HP15_1417

Experiment: m.b. acetate 87.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1416 and HP15_1417 are separated by 81 nucleotidesHP15_1417 and HP15_1418 are separated by 22 nucleotides HP15_1416: HP15_1416 - L-carnitine dehydratase/bile acid-inducible protein F, at 1,498,187 to 1,499,392 _1416 HP15_1417: HP15_1417 - ABC transporter, ATP-binding protein, at 1,499,474 to 1,500,211 _1417 HP15_1418: HP15_1418 - membrane protein containing DUF214, permase predicted, at 1,500,234 to 1,502,768 _1418 Position (kb) 1499 1500 1501Strain fitness (log2 ratio) -2 -1 0 1at 1498.575 kb on + strand, within HP15_1416at 1498.646 kb on + strand, within HP15_1416at 1498.792 kb on + strand, within HP15_1416at 1498.846 kb on - strand, within HP15_1416at 1498.937 kb on - strand, within HP15_1416at 1499.084 kb on - strand, within HP15_1416at 1499.216 kb on + strand, within HP15_1416at 1499.502 kb on + strandat 1499.655 kb on + strand, within HP15_1417at 1499.839 kb on + strand, within HP15_1417at 1499.917 kb on + strand, within HP15_1417at 1499.939 kb on - strand, within HP15_1417at 1499.950 kb on + strand, within HP15_1417at 1499.950 kb on + strand, within HP15_1417at 1499.963 kb on - strand, within HP15_1417at 1499.997 kb on - strand, within HP15_1417at 1500.080 kb on + strand, within HP15_1417at 1500.112 kb on + strand, within HP15_1417at 1500.138 kb on + strandat 1500.146 kb on - strandat 1500.146 kb on - strandat 1500.146 kb on - strandat 1500.204 kb on - strandat 1500.217 kb on + strandat 1500.224 kb on - strandat 1500.315 kb on + strandat 1500.349 kb on - strandat 1500.533 kb on + strand, within HP15_1418at 1500.568 kb on - strand, within HP15_1418at 1500.821 kb on - strand, within HP15_1418at 1500.987 kb on + strand, within HP15_1418at 1500.987 kb on + strand, within HP15_1418at 1501.058 kb on + strand, within HP15_1418at 1501.096 kb on + strand, within HP15_1418at 1501.104 kb on - strand, within HP15_1418at 1501.159 kb on + strand, within HP15_1418at 1501.189 kb on + strand, within HP15_1418

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 87.5 mM
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1,498,575 + HP15_1416 0.32 +0.6
1,498,646 + HP15_1416 0.38 -0.1
1,498,792 + HP15_1416 0.50 +0.0
1,498,846 - HP15_1416 0.55 +0.9
1,498,937 - HP15_1416 0.62 +1.4
1,499,084 - HP15_1416 0.74 +0.3
1,499,216 + HP15_1416 0.85 -0.4
1,499,502 + +0.1
1,499,655 + HP15_1417 0.25 +1.0
1,499,839 + HP15_1417 0.49 +0.2
1,499,917 + HP15_1417 0.60 -0.0
1,499,939 - HP15_1417 0.63 +1.0
1,499,950 + HP15_1417 0.64 +0.2
1,499,950 + HP15_1417 0.64 +0.2
1,499,963 - HP15_1417 0.66 +0.4
1,499,997 - HP15_1417 0.71 -0.0
1,500,080 + HP15_1417 0.82 +1.3
1,500,112 + HP15_1417 0.86 +0.3
1,500,138 + +0.9
1,500,146 - +0.2
1,500,146 - -2.2
1,500,146 - -0.9
1,500,204 - -0.8
1,500,217 + +0.6
1,500,224 - -0.4
1,500,315 + +0.6
1,500,349 - +0.9
1,500,533 + HP15_1418 0.12 +0.1
1,500,568 - HP15_1418 0.13 -0.2
1,500,821 - HP15_1418 0.23 +0.3
1,500,987 + HP15_1418 0.30 +0.3
1,500,987 + HP15_1418 0.30 -0.0
1,501,058 + HP15_1418 0.33 +0.1
1,501,096 + HP15_1418 0.34 +0.9
1,501,104 - HP15_1418 0.34 +0.2
1,501,159 + HP15_1418 0.36 -0.5
1,501,189 + HP15_1418 0.38 -0.8

Or see this region's nucleotide sequence