Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c14260

Experiment: m.b. nitrite 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c14250 and PGA1_c14260 are separated by 4 nucleotidesPGA1_c14260 and PGA1_c14270 are separated by 119 nucleotidesPGA1_c14270 and PGA1_c14280 are separated by 3 nucleotides PGA1_c14250: PGA1_c14250 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase Dxr, at 1,479,226 to 1,480,398 _c14250 PGA1_c14260: PGA1_c14260 - peptidase M50, at 1,480,403 to 1,481,752 _c14260 PGA1_c14270: PGA1_c14270 - hypothetical protein, at 1,481,872 to 1,482,195 _c14270 PGA1_c14280: PGA1_c14280 - outer membrane protein Omp, at 1,482,199 to 1,484,595 _c14280 Position (kb) 1480 1481 1482Strain fitness (log2 ratio) -3 -2 -1 0 1at 1480.388 kb on + strandat 1480.393 kb on + strandat 1480.802 kb on + strand, within PGA1_c14260at 1480.967 kb on - strand, within PGA1_c14260at 1481.237 kb on + strand, within PGA1_c14260at 1481.401 kb on + strand, within PGA1_c14260at 1481.401 kb on + strand, within PGA1_c14260at 1481.401 kb on + strand, within PGA1_c14260at 1481.401 kb on + strand, within PGA1_c14260at 1481.646 kb on + strandat 1481.771 kb on + strandat 1481.779 kb on - strandat 1481.779 kb on - strandat 1481.786 kb on + strandat 1481.786 kb on + strandat 1481.786 kb on + strandat 1481.786 kb on + strandat 1481.786 kb on + strandat 1481.794 kb on - strandat 1481.794 kb on - strandat 1481.874 kb on + strandat 1481.938 kb on + strand, within PGA1_c14270at 1481.945 kb on + strand, within PGA1_c14270at 1481.947 kb on + strand, within PGA1_c14270at 1481.948 kb on - strand, within PGA1_c14270at 1482.018 kb on - strand, within PGA1_c14270

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM
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1,480,388 + -1.2
1,480,393 + +0.1
1,480,802 + PGA1_c14260 0.30 -1.2
1,480,967 - PGA1_c14260 0.42 -1.7
1,481,237 + PGA1_c14260 0.62 -0.9
1,481,401 + PGA1_c14260 0.74 +0.1
1,481,401 + PGA1_c14260 0.74 -2.4
1,481,401 + PGA1_c14260 0.74 +0.1
1,481,401 + PGA1_c14260 0.74 -0.9
1,481,646 + -1.3
1,481,771 + +0.5
1,481,779 - -1.0
1,481,779 - -2.7
1,481,786 + +0.1
1,481,786 + -2.9
1,481,786 + -0.2
1,481,786 + -2.6
1,481,786 + -1.4
1,481,794 - -0.3
1,481,794 - -1.2
1,481,874 + -3.0
1,481,938 + PGA1_c14270 0.20 +0.4
1,481,945 + PGA1_c14270 0.23 -0.4
1,481,947 + PGA1_c14270 0.23 -0.6
1,481,948 - PGA1_c14270 0.23 +0.4
1,482,018 - PGA1_c14270 0.45 -2.9

Or see this region's nucleotide sequence