Strain Fitness in Marinobacter adhaerens HP15 around HP15_1192

Experiment: m.b. acetate 87.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1190 and HP15_1191 are separated by 27 nucleotidesHP15_1191 and HP15_1192 are separated by 36 nucleotidesHP15_1192 and HP15_1193 are separated by 97 nucleotides HP15_1190: HP15_1190 - methyl-accepting chemotaxis sensory transducer, at 1,224,081 to 1,225,706 _1190 HP15_1191: HP15_1191 - metallo-beta-lactamase family protein, at 1,225,734 to 1,226,381 _1191 HP15_1192: HP15_1192 - cytochrome c family protein, at 1,226,418 to 1,226,996 _1192 HP15_1193: HP15_1193 - conserved hypothetical protein, at 1,227,094 to 1,227,768 _1193 Position (kb) 1226 1227Strain fitness (log2 ratio) -1 0 1at 1225.450 kb on + strand, within HP15_1190at 1225.466 kb on - strand, within HP15_1190at 1225.473 kb on - strand, within HP15_1190at 1225.587 kb on + strandat 1225.740 kb on - strandat 1225.740 kb on - strandat 1225.784 kb on + strandat 1225.865 kb on + strand, within HP15_1191at 1225.990 kb on - strand, within HP15_1191at 1225.990 kb on - strand, within HP15_1191at 1225.992 kb on + strand, within HP15_1191at 1226.174 kb on + strand, within HP15_1191at 1226.249 kb on - strand, within HP15_1191at 1226.317 kb on + strandat 1226.394 kb on - strandat 1226.500 kb on - strand, within HP15_1192at 1226.502 kb on - strand, within HP15_1192at 1226.623 kb on - strand, within HP15_1192at 1226.641 kb on + strand, within HP15_1192at 1226.726 kb on + strand, within HP15_1192at 1226.812 kb on - strand, within HP15_1192at 1226.931 kb on - strand, within HP15_1192at 1227.012 kb on + strandat 1227.134 kb on + strandat 1227.150 kb on + strandat 1227.281 kb on + strand, within HP15_1193at 1227.323 kb on - strand, within HP15_1193at 1227.397 kb on - strand, within HP15_1193at 1227.442 kb on + strand, within HP15_1193at 1227.450 kb on - strand, within HP15_1193at 1227.557 kb on - strand, within HP15_1193at 1227.783 kb on - strandat 1227.858 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 87.5 mM
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1,225,450 + HP15_1190 0.84 +1.1
1,225,466 - HP15_1190 0.85 +0.7
1,225,473 - HP15_1190 0.86 +0.1
1,225,587 + -0.2
1,225,740 - +0.9
1,225,740 - -1.2
1,225,784 + +0.7
1,225,865 + HP15_1191 0.20 +0.0
1,225,990 - HP15_1191 0.40 +0.4
1,225,990 - HP15_1191 0.40 -0.8
1,225,992 + HP15_1191 0.40 -0.1
1,226,174 + HP15_1191 0.68 +0.3
1,226,249 - HP15_1191 0.79 -0.4
1,226,317 + +0.1
1,226,394 - -0.2
1,226,500 - HP15_1192 0.14 -0.2
1,226,502 - HP15_1192 0.15 +1.3
1,226,623 - HP15_1192 0.35 +0.9
1,226,641 + HP15_1192 0.39 +0.2
1,226,726 + HP15_1192 0.53 -0.2
1,226,812 - HP15_1192 0.68 -0.3
1,226,931 - HP15_1192 0.89 +1.7
1,227,012 + -0.1
1,227,134 + -0.6
1,227,150 + +0.6
1,227,281 + HP15_1193 0.28 +0.5
1,227,323 - HP15_1193 0.34 -0.7
1,227,397 - HP15_1193 0.45 +0.0
1,227,442 + HP15_1193 0.52 -0.5
1,227,450 - HP15_1193 0.53 +1.1
1,227,557 - HP15_1193 0.69 -0.6
1,227,783 - +1.4
1,227,858 - +0.9

Or see this region's nucleotide sequence