Strain Fitness in Shewanella amazonensis SB2B around Sama_0768

Experiment: Zinc 0.15625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0767 and Sama_0768 are separated by 53 nucleotidesSama_0768 and Sama_0769 are separated by 253 nucleotides Sama_0767: Sama_0767 - putative methyl-accepting chemotaxis sensory transducer (RefSeq), at 950,251 to 951,891 _0767 Sama_0768: Sama_0768 - hypothetical protein (RefSeq), at 951,945 to 952,535 _0768 Sama_0769: Sama_0769 - UDP-N-acetylmuramate (RefSeq), at 952,789 to 954,165 _0769 Position (kb) 951 952 953Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 951.053 kb on + strand, within Sama_0767at 951.255 kb on + strand, within Sama_0767at 951.256 kb on - strand, within Sama_0767at 951.256 kb on - strand, within Sama_0767at 951.256 kb on - strand, within Sama_0767at 951.262 kb on - strand, within Sama_0767at 951.382 kb on - strand, within Sama_0767at 951.434 kb on + strand, within Sama_0767at 951.542 kb on + strand, within Sama_0767at 951.544 kb on - strand, within Sama_0767at 951.544 kb on - strand, within Sama_0767at 951.600 kb on - strand, within Sama_0767at 951.651 kb on + strand, within Sama_0767at 951.652 kb on - strand, within Sama_0767at 951.816 kb on + strandat 951.853 kb on - strandat 951.853 kb on - strandat 951.889 kb on + strandat 951.890 kb on - strandat 951.901 kb on - strandat 951.947 kb on - strandat 951.999 kb on + strandat 952.008 kb on - strand, within Sama_0768at 952.176 kb on + strand, within Sama_0768at 952.177 kb on - strand, within Sama_0768at 952.177 kb on - strand, within Sama_0768at 952.177 kb on - strand, within Sama_0768at 952.261 kb on + strand, within Sama_0768at 952.573 kb on + strandat 952.617 kb on + strandat 952.617 kb on + strandat 952.618 kb on - strandat 952.618 kb on - strandat 952.724 kb on + strandat 952.724 kb on + strandat 952.724 kb on + strandat 952.725 kb on - strandat 952.729 kb on + strandat 952.729 kb on + strandat 952.768 kb on + strandat 952.796 kb on + strandat 952.796 kb on + strandat 952.796 kb on + strandat 952.796 kb on + strandat 952.797 kb on - strandat 952.891 kb on + strandat 952.926 kb on + strandat 953.050 kb on + strand, within Sama_0769at 953.050 kb on + strand, within Sama_0769at 953.127 kb on + strand, within Sama_0769at 953.272 kb on + strand, within Sama_0769at 953.334 kb on + strand, within Sama_0769at 953.364 kb on + strand, within Sama_0769at 953.400 kb on + strand, within Sama_0769at 953.400 kb on + strand, within Sama_0769at 953.511 kb on + strand, within Sama_0769at 953.511 kb on + strand, within Sama_0769

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 0.15625 mM
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951,053 + Sama_0767 0.49 -0.3
951,255 + Sama_0767 0.61 -0.5
951,256 - Sama_0767 0.61 -0.2
951,256 - Sama_0767 0.61 -1.2
951,256 - Sama_0767 0.61 +0.5
951,262 - Sama_0767 0.62 +0.4
951,382 - Sama_0767 0.69 +0.5
951,434 + Sama_0767 0.72 +0.3
951,542 + Sama_0767 0.79 -0.5
951,544 - Sama_0767 0.79 +0.3
951,544 - Sama_0767 0.79 -0.7
951,600 - Sama_0767 0.82 -0.5
951,651 + Sama_0767 0.85 -1.0
951,652 - Sama_0767 0.85 -0.0
951,816 + +1.0
951,853 - -0.1
951,853 - -0.3
951,889 + -1.1
951,890 - -0.8
951,901 - -0.7
951,947 - -0.2
951,999 + +1.4
952,008 - Sama_0768 0.11 +1.2
952,176 + Sama_0768 0.39 -1.2
952,177 - Sama_0768 0.39 -3.1
952,177 - Sama_0768 0.39 -0.4
952,177 - Sama_0768 0.39 -0.8
952,261 + Sama_0768 0.53 -1.3
952,573 + -0.3
952,617 + -0.1
952,617 + +0.5
952,618 - -1.5
952,618 - +0.3
952,724 + +0.5
952,724 + -1.3
952,724 + -0.3
952,725 - -1.5
952,729 + +1.5
952,729 + +0.3
952,768 + -0.3
952,796 + -1.2
952,796 + -0.2
952,796 + +0.1
952,796 + +1.2
952,797 - -1.7
952,891 + -2.0
952,926 + +3.1
953,050 + Sama_0769 0.19 -0.1
953,050 + Sama_0769 0.19 +0.3
953,127 + Sama_0769 0.25 +2.1
953,272 + Sama_0769 0.35 +0.4
953,334 + Sama_0769 0.40 -0.3
953,364 + Sama_0769 0.42 -0.1
953,400 + Sama_0769 0.44 +0.7
953,400 + Sama_0769 0.44 +0.0
953,511 + Sama_0769 0.52 -0.6
953,511 + Sama_0769 0.52 +1.0

Or see this region's nucleotide sequence