Experiment: Zinc 0.15625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0394 and purH are separated by 57 nucleotides purH and zntR are separated by 292 nucleotides zntR and Sama_0397 overlap by 10 nucleotides
Sama_0394: Sama_0394 - phosphoribosylamine--glycine ligase (RefSeq), at 489,862 to 491,157
_0394
Sama_0395: purH - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (RefSeq), at 491,215 to 492,804
purH
Sama_0396: zntR - zinc-responsive transcriptional regulator (RefSeq), at 493,097 to 493,630
zntR
Sama_0397: Sama_0397 - hypothetical protein (RefSeq), at 493,621 to 495,093
_0397
Position (kb) 491
492
493 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 490.286 kb on + strand, within Sama_0394 at 490.287 kb on - strand, within Sama_0394 at 490.287 kb on - strand, within Sama_0394 at 490.287 kb on - strand, within Sama_0394 at 490.334 kb on + strand, within Sama_0394 at 490.334 kb on + strand, within Sama_0394 at 490.335 kb on - strand, within Sama_0394 at 490.335 kb on - strand, within Sama_0394 at 490.335 kb on - strand, within Sama_0394 at 490.335 kb on - strand, within Sama_0394 at 490.349 kb on + strand, within Sama_0394 at 490.349 kb on + strand, within Sama_0394 at 490.349 kb on + strand, within Sama_0394 at 490.349 kb on + strand, within Sama_0394 at 490.349 kb on + strand, within Sama_0394 at 490.350 kb on - strand, within Sama_0394 at 490.350 kb on - strand, within Sama_0394 at 490.392 kb on + strand, within Sama_0394 at 490.392 kb on + strand, within Sama_0394 at 490.393 kb on - strand, within Sama_0394 at 490.418 kb on - strand, within Sama_0394 at 490.418 kb on - strand, within Sama_0394 at 490.418 kb on - strand, within Sama_0394 at 490.418 kb on - strand, within Sama_0394 at 490.418 kb on - strand, within Sama_0394 at 490.448 kb on + strand, within Sama_0394 at 490.448 kb on + strand, within Sama_0394 at 490.448 kb on + strand, within Sama_0394 at 490.554 kb on + strand, within Sama_0394 at 490.588 kb on + strand, within Sama_0394 at 490.588 kb on + strand, within Sama_0394 at 490.588 kb on + strand, within Sama_0394 at 490.588 kb on + strand, within Sama_0394 at 490.589 kb on - strand, within Sama_0394 at 490.589 kb on - strand, within Sama_0394 at 490.589 kb on - strand, within Sama_0394 at 490.589 kb on - strand, within Sama_0394 at 490.591 kb on + strand, within Sama_0394 at 490.591 kb on + strand, within Sama_0394 at 490.591 kb on + strand, within Sama_0394 at 490.592 kb on - strand, within Sama_0394 at 490.592 kb on - strand, within Sama_0394 at 490.592 kb on - strand, within Sama_0394 at 490.635 kb on + strand, within Sama_0394 at 490.635 kb on + strand, within Sama_0394 at 490.635 kb on + strand, within Sama_0394 at 490.636 kb on - strand, within Sama_0394 at 490.678 kb on - strand, within Sama_0394 at 490.690 kb on - strand, within Sama_0394 at 490.875 kb on + strand, within Sama_0394 at 490.875 kb on + strand, within Sama_0394 at 490.875 kb on + strand, within Sama_0394 at 490.951 kb on + strand, within Sama_0394 at 490.951 kb on + strand, within Sama_0394 at 490.951 kb on + strand, within Sama_0394 at 490.951 kb on + strand, within Sama_0394 at 490.951 kb on + strand, within Sama_0394 at 490.951 kb on + strand, within Sama_0394 at 490.951 kb on + strand, within Sama_0394 at 490.951 kb on + strand, within Sama_0394 at 490.951 kb on + strand, within Sama_0394 at 490.951 kb on + strand, within Sama_0394 at 490.952 kb on - strand, within Sama_0394 at 490.952 kb on - strand, within Sama_0394 at 490.952 kb on - strand, within Sama_0394 at 490.952 kb on - strand, within Sama_0394 at 490.952 kb on - strand, within Sama_0394 at 490.952 kb on - strand, within Sama_0394 at 490.952 kb on - strand, within Sama_0394 at 490.952 kb on - strand, within Sama_0394 at 490.952 kb on - strand, within Sama_0394 at 490.952 kb on - strand, within Sama_0394 at 491.074 kb on + strand at 491.074 kb on + strand at 491.075 kb on - strand at 491.075 kb on - strand at 491.075 kb on - strand at 491.075 kb on - strand at 491.075 kb on - strand at 491.079 kb on + strand at 491.079 kb on + strand at 491.080 kb on - strand at 491.080 kb on - strand at 491.080 kb on - strand at 491.083 kb on + strand at 491.083 kb on + strand at 491.083 kb on + strand at 491.083 kb on + strand at 491.084 kb on - strand at 491.084 kb on - strand at 491.151 kb on + strand at 491.152 kb on - strand at 491.163 kb on + strand at 491.163 kb on + strand at 491.164 kb on - strand at 491.170 kb on + strand at 491.170 kb on + strand at 491.210 kb on + strand at 491.211 kb on - strand at 491.211 kb on - strand at 491.211 kb on - strand at 491.213 kb on + strand at 491.213 kb on + strand at 491.213 kb on + strand at 491.299 kb on - strand at 491.352 kb on + strand at 491.450 kb on + strand, within purH at 491.482 kb on + strand, within purH at 491.483 kb on - strand, within purH at 491.483 kb on - strand, within purH at 491.483 kb on - strand, within purH at 491.483 kb on - strand, within purH at 491.483 kb on - strand, within purH at 491.483 kb on - strand, within purH at 491.504 kb on + strand, within purH at 491.504 kb on + strand, within purH at 491.505 kb on - strand, within purH at 491.505 kb on - strand, within purH at 491.581 kb on + strand, within purH at 491.622 kb on + strand, within purH at 491.622 kb on + strand, within purH at 491.623 kb on - strand, within purH at 491.623 kb on - strand, within purH at 491.643 kb on + strand, within purH at 491.643 kb on + strand, within purH at 491.643 kb on + strand, within purH at 491.643 kb on + strand, within purH at 491.669 kb on + strand, within purH at 491.669 kb on + strand, within purH at 491.838 kb on + strand, within purH at 491.882 kb on + strand, within purH at 491.882 kb on + strand, within purH at 491.882 kb on + strand, within purH at 491.883 kb on - strand, within purH at 491.883 kb on - strand, within purH at 491.894 kb on + strand, within purH at 491.894 kb on + strand, within purH at 491.894 kb on + strand, within purH at 491.895 kb on - strand, within purH at 492.020 kb on + strand, within purH at 492.089 kb on + strand, within purH at 492.089 kb on + strand, within purH at 492.090 kb on - strand, within purH at 492.090 kb on - strand, within purH at 492.090 kb on - strand, within purH at 492.090 kb on - strand, within purH at 492.090 kb on - strand, within purH at 492.227 kb on + strand, within purH at 492.227 kb on + strand, within purH at 492.227 kb on + strand, within purH at 492.228 kb on - strand, within purH at 492.228 kb on - strand, within purH at 492.228 kb on - strand, within purH at 492.228 kb on - strand, within purH at 492.228 kb on - strand, within purH at 492.248 kb on + strand, within purH at 492.249 kb on - strand, within purH at 492.306 kb on + strand, within purH at 492.307 kb on - strand, within purH at 492.338 kb on - strand, within purH at 492.347 kb on + strand, within purH at 492.347 kb on + strand, within purH at 492.347 kb on + strand, within purH at 492.348 kb on - strand, within purH at 492.412 kb on - strand, within purH at 492.412 kb on - strand, within purH at 492.453 kb on + strand, within purH at 492.453 kb on + strand, within purH at 492.454 kb on - strand, within purH at 492.454 kb on - strand, within purH at 492.469 kb on + strand, within purH at 492.489 kb on - strand, within purH at 492.489 kb on - strand, within purH at 492.635 kb on + strand, within purH at 492.636 kb on - strand, within purH at 492.636 kb on - strand, within purH at 492.659 kb on - strand at 492.659 kb on - strand at 492.710 kb on - strand at 492.710 kb on - strand at 492.747 kb on + strand at 492.747 kb on + strand at 492.747 kb on + strand at 492.747 kb on + strand at 492.748 kb on - strand at 492.748 kb on - strand at 492.748 kb on - strand at 492.748 kb on - strand at 492.798 kb on + strand at 492.799 kb on - strand at 492.799 kb on - strand at 492.799 kb on - strand at 492.902 kb on - strand at 492.902 kb on - strand at 492.911 kb on + strand at 492.911 kb on + strand at 492.911 kb on + strand at 492.912 kb on - strand at 492.936 kb on - strand at 492.945 kb on + strand at 492.945 kb on + strand at 492.945 kb on + strand at 492.955 kb on + strand at 492.997 kb on + strand at 492.997 kb on + strand at 492.998 kb on - strand at 492.998 kb on - strand at 493.026 kb on + strand at 493.026 kb on + strand at 493.026 kb on + strand at 493.026 kb on + strand at 493.027 kb on - strand at 493.027 kb on - strand at 493.061 kb on + strand at 493.062 kb on - strand at 493.062 kb on - strand at 493.063 kb on + strand at 493.063 kb on + strand at 493.063 kb on + strand at 493.092 kb on - strand at 493.100 kb on + strand at 493.100 kb on + strand at 493.100 kb on + strand at 493.100 kb on + strand at 493.100 kb on + strand at 493.101 kb on - strand at 493.101 kb on - strand at 493.101 kb on - strand at 493.101 kb on - strand at 493.206 kb on - strand, within zntR at 493.246 kb on + strand, within zntR at 493.246 kb on + strand, within zntR at 493.247 kb on - strand, within zntR at 493.315 kb on + strand, within zntR at 493.316 kb on - strand, within zntR at 493.316 kb on - strand, within zntR at 493.316 kb on - strand, within zntR at 493.379 kb on - strand, within zntR at 493.379 kb on - strand, within zntR at 493.566 kb on + strand, within zntR at 493.566 kb on + strand, within zntR at 493.566 kb on + strand, within zntR at 493.567 kb on - strand, within zntR at 493.591 kb on + strand at 493.756 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Zinc 0.15625 mM remove 490,286 + Sama_0394 0.33 -0.7 490,287 - Sama_0394 0.33 +0.8 490,287 - Sama_0394 0.33 -0.2 490,287 - Sama_0394 0.33 +0.9 490,334 + Sama_0394 0.36 -0.1 490,334 + Sama_0394 0.36 -0.3 490,335 - Sama_0394 0.36 -0.9 490,335 - Sama_0394 0.36 -1.7 490,335 - Sama_0394 0.36 +1.4 490,335 - Sama_0394 0.36 +1.7 490,349 + Sama_0394 0.38 +0.2 490,349 + Sama_0394 0.38 -0.2 490,349 + Sama_0394 0.38 +0.1 490,349 + Sama_0394 0.38 -0.7 490,349 + Sama_0394 0.38 +0.2 490,350 - Sama_0394 0.38 +0.9 490,350 - Sama_0394 0.38 -0.2 490,392 + Sama_0394 0.41 +0.6 490,392 + Sama_0394 0.41 -0.7 490,393 - Sama_0394 0.41 -0.7 490,418 - Sama_0394 0.43 +0.1 490,418 - Sama_0394 0.43 -1.1 490,418 - Sama_0394 0.43 -1.2 490,418 - Sama_0394 0.43 +2.0 490,418 - Sama_0394 0.43 -1.3 490,448 + Sama_0394 0.45 +1.4 490,448 + Sama_0394 0.45 +0.7 490,448 + Sama_0394 0.45 -0.1 490,554 + Sama_0394 0.53 -1.3 490,588 + Sama_0394 0.56 -1.1 490,588 + Sama_0394 0.56 +0.5 490,588 + Sama_0394 0.56 -1.0 490,588 + Sama_0394 0.56 -0.3 490,589 - Sama_0394 0.56 +1.7 490,589 - Sama_0394 0.56 -0.1 490,589 - Sama_0394 0.56 -0.2 490,589 - Sama_0394 0.56 -0.3 490,591 + Sama_0394 0.56 -0.5 490,591 + Sama_0394 0.56 +0.5 490,591 + Sama_0394 0.56 +0.2 490,592 - Sama_0394 0.56 +0.1 490,592 - Sama_0394 0.56 -0.3 490,592 - Sama_0394 0.56 -0.3 490,635 + Sama_0394 0.60 +0.8 490,635 + Sama_0394 0.60 +0.7 490,635 + Sama_0394 0.60 +0.9 490,636 - Sama_0394 0.60 -0.5 490,678 - Sama_0394 0.63 -1.3 490,690 - Sama_0394 0.64 +0.4 490,875 + Sama_0394 0.78 +0.6 490,875 + Sama_0394 0.78 +0.5 490,875 + Sama_0394 0.78 +1.3 490,951 + Sama_0394 0.84 -1.2 490,951 + Sama_0394 0.84 -0.2 490,951 + Sama_0394 0.84 -0.6 490,951 + Sama_0394 0.84 +0.7 490,951 + Sama_0394 0.84 -0.0 490,951 + Sama_0394 0.84 +0.6 490,951 + Sama_0394 0.84 -0.5 490,951 + Sama_0394 0.84 +0.2 490,951 + Sama_0394 0.84 +0.7 490,951 + Sama_0394 0.84 -0.5 490,952 - Sama_0394 0.84 +1.1 490,952 - Sama_0394 0.84 -0.7 490,952 - Sama_0394 0.84 +0.9 490,952 - Sama_0394 0.84 +0.9 490,952 - Sama_0394 0.84 -0.2 490,952 - Sama_0394 0.84 +0.1 490,952 - Sama_0394 0.84 -0.1 490,952 - Sama_0394 0.84 -0.3 490,952 - Sama_0394 0.84 -0.2 490,952 - Sama_0394 0.84 +0.7 491,074 + -0.2 491,074 + -1.9 491,075 - -1.3 491,075 - -0.0 491,075 - +1.5 491,075 - -0.0 491,075 - +1.2 491,079 + -0.4 491,079 + +0.2 491,080 - +0.3 491,080 - +0.3 491,080 - +0.7 491,083 + -0.3 491,083 + +0.0 491,083 + -0.3 491,083 + -0.7 491,084 - -0.8 491,084 - +0.4 491,151 + -0.9 491,152 - +0.5 491,163 + +0.6 491,163 + +0.3 491,164 - -1.2 491,170 + -1.5 491,170 + +1.1 491,210 + -0.2 491,211 - +0.2 491,211 - -1.2 491,211 - -1.3 491,213 + -0.4 491,213 + -1.2 491,213 + -0.7 491,299 - +0.3 491,352 + +1.1 491,450 + purH Sama_0395 0.15 -0.1 491,482 + purH Sama_0395 0.17 -2.0 491,483 - purH Sama_0395 0.17 +0.5 491,483 - purH Sama_0395 0.17 +0.3 491,483 - purH Sama_0395 0.17 +0.7 491,483 - purH Sama_0395 0.17 +0.4 491,483 - purH Sama_0395 0.17 +0.2 491,483 - purH Sama_0395 0.17 -1.4 491,504 + purH Sama_0395 0.18 +0.4 491,504 + purH Sama_0395 0.18 -0.9 491,505 - purH Sama_0395 0.18 -0.2 491,505 - purH Sama_0395 0.18 -0.3 491,581 + purH Sama_0395 0.23 +0.5 491,622 + purH Sama_0395 0.26 -0.3 491,622 + purH Sama_0395 0.26 +0.1 491,623 - purH Sama_0395 0.26 +0.7 491,623 - purH Sama_0395 0.26 -0.6 491,643 + purH Sama_0395 0.27 +0.2 491,643 + purH Sama_0395 0.27 -0.5 491,643 + purH Sama_0395 0.27 +1.7 491,643 + purH Sama_0395 0.27 -0.3 491,669 + purH Sama_0395 0.29 +0.0 491,669 + purH Sama_0395 0.29 +0.7 491,838 + purH Sama_0395 0.39 -1.7 491,882 + purH Sama_0395 0.42 -0.6 491,882 + purH Sama_0395 0.42 +2.0 491,882 + purH Sama_0395 0.42 +0.2 491,883 - purH Sama_0395 0.42 -0.8 491,883 - purH Sama_0395 0.42 -1.1 491,894 + purH Sama_0395 0.43 +0.2 491,894 + purH Sama_0395 0.43 -0.5 491,894 + purH Sama_0395 0.43 +0.4 491,895 - purH Sama_0395 0.43 +0.7 492,020 + purH Sama_0395 0.51 +1.1 492,089 + purH Sama_0395 0.55 -2.2 492,089 + purH Sama_0395 0.55 +0.9 492,090 - purH Sama_0395 0.55 +0.7 492,090 - purH Sama_0395 0.55 -0.2 492,090 - purH Sama_0395 0.55 -0.0 492,090 - purH Sama_0395 0.55 +1.2 492,090 - purH Sama_0395 0.55 -0.7 492,227 + purH Sama_0395 0.64 +0.2 492,227 + purH Sama_0395 0.64 +0.3 492,227 + purH Sama_0395 0.64 -1.0 492,228 - purH Sama_0395 0.64 +0.1 492,228 - purH Sama_0395 0.64 +0.3 492,228 - purH Sama_0395 0.64 -0.0 492,228 - purH Sama_0395 0.64 -0.5 492,228 - purH Sama_0395 0.64 -0.3 492,248 + purH Sama_0395 0.65 +0.2 492,249 - purH Sama_0395 0.65 -0.5 492,306 + purH Sama_0395 0.69 +0.7 492,307 - purH Sama_0395 0.69 -1.0 492,338 - purH Sama_0395 0.71 +0.5 492,347 + purH Sama_0395 0.71 +0.7 492,347 + purH Sama_0395 0.71 +1.9 492,347 + purH Sama_0395 0.71 -0.1 492,348 - purH Sama_0395 0.71 -0.4 492,412 - purH Sama_0395 0.75 -0.3 492,412 - purH Sama_0395 0.75 -1.4 492,453 + purH Sama_0395 0.78 -1.3 492,453 + purH Sama_0395 0.78 +0.5 492,454 - purH Sama_0395 0.78 +1.0 492,454 - purH Sama_0395 0.78 +0.3 492,469 + purH Sama_0395 0.79 -0.3 492,489 - purH Sama_0395 0.80 +1.0 492,489 - purH Sama_0395 0.80 -0.1 492,635 + purH Sama_0395 0.89 +0.4 492,636 - purH Sama_0395 0.89 -0.1 492,636 - purH Sama_0395 0.89 -0.0 492,659 - +1.2 492,659 - +0.8 492,710 - +2.7 492,710 - -1.0 492,747 + -0.9 492,747 + -0.1 492,747 + +2.7 492,747 + -0.8 492,748 - -0.7 492,748 - -0.9 492,748 - -0.1 492,748 - -0.3 492,798 + +0.4 492,799 - +0.3 492,799 - -0.2 492,799 - +1.1 492,902 - +0.2 492,902 - +1.7 492,911 + -0.0 492,911 + -0.7 492,911 + +2.1 492,912 - +1.4 492,936 - +1.1 492,945 + -0.0 492,945 + +0.2 492,945 + -1.3 492,955 + +0.1 492,997 + -0.2 492,997 + +0.1 492,998 - -0.0 492,998 - +0.9 493,026 + +0.6 493,026 + -0.3 493,026 + +0.4 493,026 + -0.6 493,027 - +0.2 493,027 - -0.4 493,061 + -3.6 493,062 - -3.0 493,062 - -0.5 493,063 + -1.2 493,063 + -1.4 493,063 + -2.3 493,092 - -2.3 493,100 + -1.3 493,100 + -1.8 493,100 + -2.4 493,100 + -0.7 493,100 + -1.9 493,101 - -4.0 493,101 - -2.7 493,101 - -1.9 493,101 - -3.3 493,206 - zntR Sama_0396 0.20 -0.9 493,246 + zntR Sama_0396 0.28 -3.5 493,246 + zntR Sama_0396 0.28 -2.4 493,247 - zntR Sama_0396 0.28 -3.1 493,315 + zntR Sama_0396 0.41 -0.3 493,316 - zntR Sama_0396 0.41 -1.1 493,316 - zntR Sama_0396 0.41 -1.8 493,316 - zntR Sama_0396 0.41 -1.5 493,379 - zntR Sama_0396 0.53 -1.8 493,379 - zntR Sama_0396 0.53 -1.5 493,566 + zntR Sama_0396 0.88 -1.1 493,566 + zntR Sama_0396 0.88 -0.3 493,566 + zntR Sama_0396 0.88 -0.1 493,567 - zntR Sama_0396 0.88 -1.4 493,591 + -1.5 493,756 - -2.1
Or see this region's nucleotide sequence