Strain Fitness in Shewanella amazonensis SB2B

Strain Fitness in Shewanella amazonensis SB2B around Sama_0104

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Zinc 0.15625 mM
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116,333	+	Sama_0103	0.17	-2.4
116,333	+	Sama_0103	0.17	-3.0
116,333	+	Sama_0103	0.17	-1.4
116,333	+	Sama_0103	0.17	-2.3
116,540	-	Sama_0103	0.35	-1.5
116,583	+	Sama_0103	0.39	-0.8
116,629	+	Sama_0103	0.44	-0.2
116,647	+	Sama_0103	0.45	-2.8
116,665	+	Sama_0103	0.47	+0.0
116,665	+	Sama_0103	0.47	-2.4
116,665	+	Sama_0103	0.47	-2.5
116,666	-	Sama_0103	0.47	-2.3
116,666	-	Sama_0103	0.47	-0.2
116,723	+	Sama_0103	0.52	-1.5
116,724	-	Sama_0103	0.52	+0.8
116,724	-	Sama_0103	0.52	-1.9
116,776	+	Sama_0103	0.57	-0.2
116,776	+	Sama_0103	0.57	-1.8
116,776	+	Sama_0103	0.57	-1.7
116,776	+	Sama_0103	0.57	-0.5
116,776	+	Sama_0103	0.57	-1.7
116,831	+	Sama_0103	0.62	-2.5
116,831	+	Sama_0103	0.62	-2.2
116,831	+	Sama_0103	0.62	-1.9
116,831	+	Sama_0103	0.62	-1.7
116,832	-	Sama_0103	0.62	-3.9
116,832	-	Sama_0103	0.62	-2.2
116,832	-	Sama_0103	0.62	-1.6
116,877	-	Sama_0103	0.66	-2.3
116,932	+	Sama_0103	0.71	-1.7
116,933	-	Sama_0103	0.71	-0.2
116,942	-	Sama_0103	0.72	-1.8
116,944	+	Sama_0103	0.72	-1.0
116,944	+	Sama_0103	0.72	-1.6
116,989	+	Sama_0103	0.76	-1.7
117,217	+			-1.0
117,217	+			-1.4
117,223	+			-0.2
117,223	+			+1.2
117,224	-			-1.7
117,359	+	Sama_0104	0.10	-0.5
117,359	+	Sama_0104	0.10	-1.1
117,359	+	Sama_0104	0.10	+0.1
117,359	+	Sama_0104	0.10	-1.3
117,359	+	Sama_0104	0.10	-1.5
117,359	+	Sama_0104	0.10	-1.1
117,359	+	Sama_0104	0.10	-1.7
117,359	+	Sama_0104	0.10	+0.6
117,359	+	Sama_0104	0.10	-0.2
117,359	+	Sama_0104	0.10	-2.9
117,359	+	Sama_0104	0.10	-1.4
117,359	+	Sama_0104	0.10	-0.5
117,359	+	Sama_0104	0.10	-1.0
117,359	+	Sama_0104	0.10	-1.5
117,360	-	Sama_0104	0.10	-0.9
117,360	-	Sama_0104	0.10	-1.9
117,360	-	Sama_0104	0.10	-1.3
117,360	-	Sama_0104	0.10	-1.7
117,360	-	Sama_0104	0.10	-0.8
117,360	-	Sama_0104	0.10	-0.6
117,360	-	Sama_0104	0.10	-1.7
117,360	-	Sama_0104	0.10	-1.4
117,441	+	Sama_0104	0.18	-1.5
117,441	+	Sama_0104	0.18	-0.2
117,482	+	Sama_0104	0.21	-0.3
117,482	+	Sama_0104	0.21	-2.2
117,482	+	Sama_0104	0.21	-2.9
117,494	+	Sama_0104	0.22	-1.6
117,592	+	Sama_0104	0.31	-2.6
117,639	+	Sama_0104	0.36	-1.5
117,639	+	Sama_0104	0.36	-1.8
117,639	+	Sama_0104	0.36	-1.5
117,639	+	Sama_0104	0.36	-0.5
117,639	+	Sama_0104	0.36	-2.4
117,639	+	Sama_0104	0.36	-3.1
117,639	+	Sama_0104	0.36	-0.2
117,640	-	Sama_0104	0.36	-2.7
117,640	-	Sama_0104	0.36	-1.8
117,666	+	Sama_0104	0.38	-1.6
117,713	+	Sama_0104	0.42	-1.9
117,713	+	Sama_0104	0.42	-1.4
117,714	-	Sama_0104	0.43	+0.8
117,781	+	Sama_0104	0.49	-0.6
117,781	+	Sama_0104	0.49	-1.7
117,781	+	Sama_0104	0.49	-0.8
117,781	+	Sama_0104	0.49	-1.5
117,782	-	Sama_0104	0.49	+0.2
117,783	+	Sama_0104	0.49	-0.8
117,784	-	Sama_0104	0.49	-1.4
117,853	+	Sama_0104	0.55	-1.0
117,853	+	Sama_0104	0.55	-0.8
117,853	+	Sama_0104	0.55	-0.1
117,853	+	Sama_0104	0.55	-1.4
117,853	+	Sama_0104	0.55	-1.9
117,854	-	Sama_0104	0.55	-3.6
117,854	-	Sama_0104	0.55	-1.3
117,854	-	Sama_0104	0.55	-1.8
117,854	-	Sama_0104	0.55	-1.7
117,854	-	Sama_0104	0.55	-0.5
117,854	-	Sama_0104	0.55	-3.8
117,854	-	Sama_0104	0.55	-1.3
118,014	+	Sama_0104	0.70	+0.6
118,050	-	Sama_0104	0.73	-0.1
118,050	-	Sama_0104	0.73	-0.5
118,050	-	Sama_0104	0.73	-2.0
118,050	-	Sama_0104	0.73	-1.5
118,084	+	Sama_0104	0.76	+0.2
118,084	+	Sama_0104	0.76	-1.2
118,259	-			-1.0
118,259	-			-2.4
118,364	-			+0.6
118,365	+			-1.0
118,365	+			+0.0
118,365	+			+0.6
118,365	+			+0.6
118,365	+			+0.1
118,365	+			-0.6
118,365	+			-0.9
118,365	+			-1.2
118,366	-			+0.0
118,366	-			-1.9
118,366	-			+1.8
118,366	-			+0.3
118,366	-			-0.5
118,366	-			-0.1
118,367	+			-0.5
118,367	+			+0.2
118,368	-			+0.6
118,368	-			+0.2
118,371	-			-0.0
118,453	+			-0.8
118,454	-			-0.5
118,454	-			-0.7
118,490	+			-3.7
118,491	-			-0.5
118,491	-			+0.0
118,491	-			-1.1
118,506	+	Sama_0105	0.11	-1.9
118,506	+	Sama_0105	0.11	-2.1
118,507	-	Sama_0105	0.11	-1.5
118,585	+	Sama_0105	0.19	-2.6
118,586	-	Sama_0105	0.19	-0.2
118,648	+	Sama_0105	0.25	+0.6
118,648	+	Sama_0105	0.25	-0.6
118,747	-	Sama_0105	0.35	-1.0
118,771	+	Sama_0105	0.38	-2.5
118,772	-	Sama_0105	0.38	-1.1
118,772	-	Sama_0105	0.38	-1.7
118,772	-	Sama_0105	0.38	+1.4
118,772	-	Sama_0105	0.38	-0.9
118,788	+	Sama_0105	0.40	-2.5
118,788	+	Sama_0105	0.40	-2.6
118,841	+	Sama_0105	0.45	-1.2
118,841	+	Sama_0105	0.45	-1.1
118,841	+	Sama_0105	0.45	-0.3
118,841	+	Sama_0105	0.45	-1.1
118,841	+	Sama_0105	0.45	-1.2
118,841	+	Sama_0105	0.45	-0.5
118,841	+	Sama_0105	0.45	-0.9
118,841	+	Sama_0105	0.45	-1.3
118,841	+	Sama_0105	0.45	-1.8
118,842	-	Sama_0105	0.45	-1.2
118,842	-	Sama_0105	0.45	-1.7
118,842	-	Sama_0105	0.45	-1.2
118,842	-	Sama_0105	0.45	-1.1
118,842	-	Sama_0105	0.45	-1.4
118,842	-	Sama_0105	0.45	-1.4
118,842	-	Sama_0105	0.45	-0.1
118,842	-	Sama_0105	0.45	+0.2
118,842	-	Sama_0105	0.45	-1.7
118,926	+	Sama_0105	0.54	-1.8
118,938	+	Sama_0105	0.55	-0.5
118,938	+	Sama_0105	0.55	-1.8
118,938	+	Sama_0105	0.55	-1.4
118,939	-	Sama_0105	0.55	+0.8
118,939	-	Sama_0105	0.55	+0.5
118,939	-	Sama_0105	0.55	-0.5
118,945	+	Sama_0105	0.56	-0.3
118,945	+	Sama_0105	0.56	+0.5
118,946	-	Sama_0105	0.56	-0.7
118,949	+	Sama_0105	0.56	+0.2
118,949	+	Sama_0105	0.56	-3.6
118,952	+	Sama_0105	0.56	-1.4
118,953	-	Sama_0105	0.57	-1.7
118,953	-	Sama_0105	0.57	+0.8
118,953	-	Sama_0105	0.57	-0.6
119,037	+	Sama_0105	0.65	-0.3
119,038	-	Sama_0105	0.65	+0.8
119,038	-	Sama_0105	0.65	-2.0
119,041	+	Sama_0105	0.66	-0.5
119,042	-	Sama_0105	0.66	-1.3
119,042	-	Sama_0105	0.66	-0.4
119,042	-	Sama_0105	0.66	-2.0
119,042	-	Sama_0105	0.66	-1.7
119,075	+	Sama_0105	0.69	-1.8
119,099	-	Sama_0105	0.71	-0.7
119,099	-	Sama_0105	0.71	-1.0
119,099	-	Sama_0105	0.71	-1.9
119,099	-	Sama_0105	0.71	+2.8
119,105	+	Sama_0105	0.72	-0.8
119,105	+	Sama_0105	0.72	-1.0
119,105	+	Sama_0105	0.72	-1.9
119,105	+	Sama_0105	0.72	-0.9
119,106	-	Sama_0105	0.72	-1.8
119,106	-	Sama_0105	0.72	-0.3
119,116	+	Sama_0105	0.73	-2.0
119,151	+	Sama_0105	0.77	+0.0
119,151	+	Sama_0105	0.77	-0.8
119,151	+	Sama_0105	0.77	-1.3
119,151	+	Sama_0105	0.77	-1.7
119,151	+	Sama_0105	0.77	-2.5
119,151	+	Sama_0105	0.77	-0.9
119,151	+	Sama_0105	0.77	-1.4
119,152	-	Sama_0105	0.77	-1.4
119,152	-	Sama_0105	0.77	-0.2
119,152	-	Sama_0105	0.77	-0.7
119,152	-	Sama_0105	0.77	-1.0
119,152	-	Sama_0105	0.77	-0.3
119,152	-	Sama_0105	0.77	+0.2
119,152	-	Sama_0105	0.77	-1.3
119,152	-	Sama_0105	0.77	+0.0
119,152	-	Sama_0105	0.77	-0.5
119,152	-	Sama_0105	0.77	-3.0
119,233	+	Sama_0105	0.85	+0.1
119,233	+	Sama_0105	0.85	+0.5
119,234	-	Sama_0105	0.85	-0.6
119,234	-	Sama_0105	0.85	-1.5
119,240	+	Sama_0105	0.86	-2.7
119,240	+	Sama_0105	0.86	-1.2
119,240	+	Sama_0105	0.86	+0.1
119,240	+	Sama_0105	0.86	-1.2
119,240	+	Sama_0105	0.86	-3.0
119,240	+	Sama_0105	0.86	-2.6
119,240	+	Sama_0105	0.86	-1.4
119,240	+	Sama_0105	0.86	+0.3
119,240	+	Sama_0105	0.86	-1.4
119,241	-	Sama_0105	0.86	-2.7
119,241	-	Sama_0105	0.86	-2.1
119,241	-	Sama_0105	0.86	-2.0
119,241	-	Sama_0105	0.86	-1.3
119,241	-	Sama_0105	0.86	-1.7
119,241	-	Sama_0105	0.86	-0.4
119,241	-	Sama_0105	0.86	-3.4
119,241	-	Sama_0105	0.86	-1.5
119,241	-	Sama_0105	0.86	-1.1
119,241	-	Sama_0105	0.86	-1.9
119,241	-	Sama_0105	0.86	-1.4
119,241	-	Sama_0105	0.86	-0.2
119,246	-	Sama_0105	0.87	-0.3
119,258	+	Sama_0105	0.88	-1.4
119,258	+	Sama_0105	0.88	-1.4
119,259	-	Sama_0105	0.88	-0.5
119,259	-	Sama_0105	0.88	-0.3
119,275	+	Sama_0105	0.89	-1.4
119,276	-	Sama_0105	0.90	-0.8
119,276	-	Sama_0105	0.90	-0.5
119,322	+			-2.5
119,323	-			-0.9
119,342	+			-0.6

Or see this region's nucleotide sequence