Experiment: m.b. acetate 175 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g137 and HP15_p187g139 are separated by 296 nucleotides HP15_p187g139 and HP15_p187g138 overlap by 12 nucleotides HP15_p187g138 and HP15_p187g140 are separated by 561 nucleotides HP15_p187g140 and HP15_p187g141 are separated by 243 nucleotides
HP15_p187g137: HP15_p187g137 - outer membrane protein OprF, at 140,211 to 141,335
_p187g137
HP15_p187g139: HP15_p187g139 - hypothetical protein, at 141,632 to 141,796
_p187g139
HP15_p187g138: HP15_p187g138 - hypothetical protein, at 141,785 to 141,937
_p187g138
HP15_p187g140: HP15_p187g140 - hypothetical protein, at 142,499 to 142,651
_p187g140
HP15_p187g141: HP15_p187g141 - conjugative transfer protein, at 142,895 to 144,159
_p187g141
Position (kb)
141
142 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 140.803 kb on + strand, within HP15_p187g137 at 140.803 kb on + strand, within HP15_p187g137 at 140.811 kb on - strand, within HP15_p187g137 at 140.811 kb on - strand, within HP15_p187g137 at 140.811 kb on - strand, within HP15_p187g137 at 140.891 kb on - strand, within HP15_p187g137 at 140.910 kb on - strand, within HP15_p187g137 at 140.911 kb on + strand, within HP15_p187g137 at 140.919 kb on - strand, within HP15_p187g137 at 140.923 kb on + strand, within HP15_p187g137 at 140.936 kb on + strand, within HP15_p187g137 at 140.936 kb on + strand, within HP15_p187g137 at 140.936 kb on + strand, within HP15_p187g137 at 140.944 kb on - strand, within HP15_p187g137 at 140.944 kb on - strand, within HP15_p187g137 at 140.944 kb on - strand, within HP15_p187g137 at 140.957 kb on + strand, within HP15_p187g137 at 140.965 kb on - strand, within HP15_p187g137 at 140.989 kb on + strand, within HP15_p187g137 at 140.989 kb on + strand, within HP15_p187g137 at 140.989 kb on + strand, within HP15_p187g137 at 140.989 kb on - strand, within HP15_p187g137 at 140.991 kb on + strand, within HP15_p187g137 at 140.997 kb on - strand, within HP15_p187g137 at 140.997 kb on - strand, within HP15_p187g137 at 141.018 kb on + strand, within HP15_p187g137 at 141.020 kb on - strand, within HP15_p187g137 at 141.048 kb on + strand, within HP15_p187g137 at 141.056 kb on - strand, within HP15_p187g137 at 141.130 kb on + strand, within HP15_p187g137 at 141.130 kb on + strand, within HP15_p187g137 at 141.130 kb on + strand, within HP15_p187g137 at 141.135 kb on + strand, within HP15_p187g137 at 141.138 kb on - strand, within HP15_p187g137 at 141.138 kb on - strand, within HP15_p187g137 at 141.138 kb on - strand, within HP15_p187g137 at 141.138 kb on - strand, within HP15_p187g137 at 141.138 kb on - strand, within HP15_p187g137 at 141.153 kb on - strand, within HP15_p187g137 at 141.252 kb on - strand at 141.258 kb on - strand at 141.259 kb on - strand at 141.411 kb on + strand at 141.416 kb on + strand at 141.416 kb on + strand at 141.424 kb on - strand at 141.424 kb on - strand at 141.424 kb on - strand at 141.424 kb on - strand at 141.450 kb on - strand at 141.457 kb on - strand at 141.458 kb on - strand at 141.458 kb on - strand at 141.464 kb on - strand at 141.491 kb on - strand at 141.491 kb on - strand at 141.524 kb on - strand at 141.636 kb on - strand at 141.648 kb on + strand at 141.679 kb on + strand, within HP15_p187g139 at 141.692 kb on - strand, within HP15_p187g139 at 141.746 kb on + strand, within HP15_p187g139 at 141.769 kb on + strand, within HP15_p187g139 at 141.777 kb on - strand, within HP15_p187g139 at 141.777 kb on - strand, within HP15_p187g139 at 141.777 kb on - strand, within HP15_p187g139 at 141.795 kb on + strand at 141.829 kb on + strand, within HP15_p187g138 at 141.892 kb on - strand, within HP15_p187g138 at 141.941 kb on + strand at 141.949 kb on - strand at 141.949 kb on - strand at 142.020 kb on - strand at 142.039 kb on + strand at 142.067 kb on + strand at 142.067 kb on + strand at 142.067 kb on + strand at 142.075 kb on - strand at 142.110 kb on - strand at 142.132 kb on + strand at 142.133 kb on + strand at 142.140 kb on - strand at 142.141 kb on - strand at 142.191 kb on + strand at 142.227 kb on + strand at 142.257 kb on + strand at 142.259 kb on + strand at 142.266 kb on + strand at 142.275 kb on - strand at 142.298 kb on - strand at 142.303 kb on + strand at 142.308 kb on - strand at 142.311 kb on - strand at 142.320 kb on - strand at 142.347 kb on + strand at 142.357 kb on + strand at 142.357 kb on + strand at 142.372 kb on - strand at 142.416 kb on + strand at 142.429 kb on - strand at 142.429 kb on - strand at 142.430 kb on - strand at 142.430 kb on - strand at 142.430 kb on - strand at 142.474 kb on + strand at 142.487 kb on + strand at 142.504 kb on + strand at 142.512 kb on - strand at 142.522 kb on + strand, within HP15_p187g140 at 142.522 kb on + strand, within HP15_p187g140 at 142.547 kb on - strand, within HP15_p187g140 at 142.551 kb on + strand, within HP15_p187g140 at 142.587 kb on - strand, within HP15_p187g140 at 142.589 kb on + strand, within HP15_p187g140 at 142.602 kb on - strand, within HP15_p187g140 at 142.602 kb on - strand, within HP15_p187g140 at 142.609 kb on + strand, within HP15_p187g140 at 142.611 kb on - strand, within HP15_p187g140 at 142.611 kb on - strand, within HP15_p187g140 at 142.646 kb on - strand at 142.651 kb on - strand at 142.701 kb on + strand at 142.701 kb on + strand at 142.709 kb on + strand at 142.724 kb on + strand at 142.724 kb on + strand at 142.732 kb on - strand at 142.753 kb on + strand at 142.776 kb on + strand at 142.886 kb on + strand at 142.921 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 175 mM remove 140,803 + HP15_p187g137 0.53 +0.3 140,803 + HP15_p187g137 0.53 -1.3 140,811 - HP15_p187g137 0.53 -1.2 140,811 - HP15_p187g137 0.53 +1.0 140,811 - HP15_p187g137 0.53 -0.4 140,891 - HP15_p187g137 0.60 +1.0 140,910 - HP15_p187g137 0.62 -0.5 140,911 + HP15_p187g137 0.62 -0.1 140,919 - HP15_p187g137 0.63 +0.7 140,923 + HP15_p187g137 0.63 -1.9 140,936 + HP15_p187g137 0.64 -1.2 140,936 + HP15_p187g137 0.64 -0.3 140,936 + HP15_p187g137 0.64 +0.5 140,944 - HP15_p187g137 0.65 -0.5 140,944 - HP15_p187g137 0.65 -0.5 140,944 - HP15_p187g137 0.65 +0.1 140,957 + HP15_p187g137 0.66 -0.3 140,965 - HP15_p187g137 0.67 -0.0 140,989 + HP15_p187g137 0.69 -0.3 140,989 + HP15_p187g137 0.69 -0.3 140,989 + HP15_p187g137 0.69 +0.7 140,989 - HP15_p187g137 0.69 -0.7 140,991 + HP15_p187g137 0.69 +0.3 140,997 - HP15_p187g137 0.70 -2.3 140,997 - HP15_p187g137 0.70 -0.5 141,018 + HP15_p187g137 0.72 -1.0 141,020 - HP15_p187g137 0.72 -0.2 141,048 + HP15_p187g137 0.74 -0.0 141,056 - HP15_p187g137 0.75 -0.1 141,130 + HP15_p187g137 0.82 +1.7 141,130 + HP15_p187g137 0.82 -0.8 141,130 + HP15_p187g137 0.82 +0.6 141,135 + HP15_p187g137 0.82 +0.6 141,138 - HP15_p187g137 0.82 -1.2 141,138 - HP15_p187g137 0.82 +0.6 141,138 - HP15_p187g137 0.82 -0.1 141,138 - HP15_p187g137 0.82 +1.2 141,138 - HP15_p187g137 0.82 -0.3 141,153 - HP15_p187g137 0.84 -0.5 141,252 - -0.6 141,258 - -0.5 141,259 - -0.4 141,411 + -0.6 141,416 + +1.0 141,416 + +0.6 141,424 - -0.3 141,424 - -0.6 141,424 - +0.9 141,424 - -0.5 141,450 - -0.6 141,457 - +1.2 141,458 - +0.7 141,458 - -0.5 141,464 - +1.2 141,491 - +0.8 141,491 - -1.7 141,524 - -0.2 141,636 - +0.4 141,648 + -0.5 141,679 + HP15_p187g139 0.28 +0.1 141,692 - HP15_p187g139 0.36 +0.2 141,746 + HP15_p187g139 0.69 -0.5 141,769 + HP15_p187g139 0.83 -0.6 141,777 - HP15_p187g139 0.88 +1.1 141,777 - HP15_p187g139 0.88 +0.6 141,777 - HP15_p187g139 0.88 +0.3 141,795 + +0.9 141,829 + HP15_p187g138 0.29 -1.5 141,892 - HP15_p187g138 0.70 -0.0 141,941 + +1.5 141,949 - +0.4 141,949 - -1.5 142,020 - +0.3 142,039 + -0.3 142,067 + +1.9 142,067 + +1.1 142,067 + +0.5 142,075 - -0.5 142,110 - +0.7 142,132 + -0.1 142,133 + -0.1 142,140 - +0.9 142,141 - +0.2 142,191 + +0.4 142,227 + +0.3 142,257 + -0.5 142,259 + +0.9 142,266 + +0.8 142,275 - +1.2 142,298 - -0.4 142,303 + +0.1 142,308 - -0.4 142,311 - -0.9 142,320 - +0.5 142,347 + -0.4 142,357 + -0.6 142,357 + +0.5 142,372 - -0.6 142,416 + -0.2 142,429 - -0.2 142,429 - +0.5 142,430 - -0.3 142,430 - +0.0 142,430 - +0.2 142,474 + -2.3 142,487 + +0.5 142,504 + -0.1 142,512 - +0.8 142,522 + HP15_p187g140 0.15 +0.6 142,522 + HP15_p187g140 0.15 -0.1 142,547 - HP15_p187g140 0.31 +0.5 142,551 + HP15_p187g140 0.34 -0.7 142,587 - HP15_p187g140 0.58 +0.1 142,589 + HP15_p187g140 0.59 -0.3 142,602 - HP15_p187g140 0.67 +0.3 142,602 - HP15_p187g140 0.67 +0.3 142,609 + HP15_p187g140 0.72 +0.1 142,611 - HP15_p187g140 0.73 -0.5 142,611 - HP15_p187g140 0.73 -0.2 142,646 - +0.4 142,651 - +0.1 142,701 + -0.9 142,701 + +1.6 142,709 + -0.1 142,724 + -0.6 142,724 + -0.8 142,732 - +0.7 142,753 + +0.6 142,776 + -0.3 142,886 + -0.1 142,921 - +0.7
Or see this region's nucleotide sequence