Strain Fitness in Marinobacter adhaerens HP15 around HP15_3617

Experiment: m.b. acetate 175 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3616 and HP15_3617 are separated by 116 nucleotidesHP15_3617 and HP15_3618 are separated by 24 nucleotides HP15_3616: HP15_3616 - tRNA/rRNA methyltransferase (SpoU), at 3,812,489 to 3,813,217 _3616 HP15_3617: HP15_3617 - protein containing transglutaminase-like domain, at 3,813,334 to 3,814,002 _3617 HP15_3618: HP15_3618 - periplasmic sugar-binding domain protein, at 3,814,027 to 3,815,181 _3618 Position (kb) 3813 3814 3815Strain fitness (log2 ratio) -1 0 1at 3812.378 kb on + strandat 3812.574 kb on + strand, within HP15_3616at 3812.665 kb on + strand, within HP15_3616at 3812.673 kb on - strand, within HP15_3616at 3812.750 kb on + strand, within HP15_3616at 3812.807 kb on + strand, within HP15_3616at 3812.815 kb on - strand, within HP15_3616at 3812.815 kb on - strand, within HP15_3616at 3812.826 kb on - strand, within HP15_3616at 3812.852 kb on - strand, within HP15_3616at 3812.862 kb on - strand, within HP15_3616at 3812.887 kb on - strand, within HP15_3616at 3812.889 kb on + strand, within HP15_3616at 3812.897 kb on - strand, within HP15_3616at 3812.897 kb on - strand, within HP15_3616at 3812.897 kb on - strand, within HP15_3616at 3812.914 kb on + strand, within HP15_3616at 3813.058 kb on - strand, within HP15_3616at 3813.063 kb on - strand, within HP15_3616at 3813.065 kb on - strand, within HP15_3616at 3813.124 kb on + strand, within HP15_3616at 3813.130 kb on - strand, within HP15_3616at 3813.159 kb on + strandat 3813.159 kb on - strandat 3813.211 kb on + strandat 3813.219 kb on - strandat 3813.335 kb on - strandat 3813.354 kb on - strandat 3813.401 kb on + strand, within HP15_3617at 3813.401 kb on + strand, within HP15_3617at 3813.401 kb on + strand, within HP15_3617at 3813.409 kb on - strand, within HP15_3617at 3813.730 kb on - strand, within HP15_3617at 3813.822 kb on + strand, within HP15_3617at 3813.937 kb on - strandat 3813.964 kb on + strandat 3813.982 kb on - strandat 3813.998 kb on + strandat 3814.006 kb on - strandat 3814.032 kb on - strandat 3814.047 kb on + strandat 3814.047 kb on + strandat 3814.052 kb on + strandat 3814.055 kb on - strandat 3814.055 kb on - strandat 3814.129 kb on - strandat 3814.332 kb on + strand, within HP15_3618at 3814.412 kb on + strand, within HP15_3618at 3814.494 kb on - strand, within HP15_3618at 3814.504 kb on - strand, within HP15_3618at 3814.537 kb on + strand, within HP15_3618at 3814.537 kb on + strand, within HP15_3618at 3814.537 kb on + strand, within HP15_3618at 3814.537 kb on + strand, within HP15_3618at 3814.545 kb on - strand, within HP15_3618at 3814.545 kb on - strand, within HP15_3618at 3814.545 kb on - strand, within HP15_3618at 3814.657 kb on - strand, within HP15_3618at 3814.676 kb on - strand, within HP15_3618at 3814.790 kb on + strand, within HP15_3618at 3814.798 kb on - strand, within HP15_3618at 3814.798 kb on - strand, within HP15_3618at 3814.843 kb on - strand, within HP15_3618at 3814.852 kb on + strand, within HP15_3618at 3814.859 kb on - strand, within HP15_3618at 3814.861 kb on + strand, within HP15_3618at 3814.935 kb on - strand, within HP15_3618at 3814.942 kb on + strand, within HP15_3618at 3814.950 kb on - strand, within HP15_3618at 3814.986 kb on + strand, within HP15_3618at 3814.987 kb on + strand, within HP15_3618

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 175 mM
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3,812,378 + -0.1
3,812,574 + HP15_3616 0.12 +0.7
3,812,665 + HP15_3616 0.24 +0.6
3,812,673 - HP15_3616 0.25 +0.1
3,812,750 + HP15_3616 0.36 -1.6
3,812,807 + HP15_3616 0.44 -0.8
3,812,815 - HP15_3616 0.45 +1.2
3,812,815 - HP15_3616 0.45 -0.2
3,812,826 - HP15_3616 0.46 +1.2
3,812,852 - HP15_3616 0.50 +1.0
3,812,862 - HP15_3616 0.51 -0.6
3,812,887 - HP15_3616 0.55 -0.0
3,812,889 + HP15_3616 0.55 +0.4
3,812,897 - HP15_3616 0.56 -0.1
3,812,897 - HP15_3616 0.56 -0.3
3,812,897 - HP15_3616 0.56 -1.0
3,812,914 + HP15_3616 0.58 -0.2
3,813,058 - HP15_3616 0.78 +0.8
3,813,063 - HP15_3616 0.79 -0.4
3,813,065 - HP15_3616 0.79 +1.3
3,813,124 + HP15_3616 0.87 +0.6
3,813,130 - HP15_3616 0.88 +0.9
3,813,159 + +0.9
3,813,159 - -1.1
3,813,211 + -0.0
3,813,219 - +0.8
3,813,335 - -0.6
3,813,354 - +0.6
3,813,401 + HP15_3617 0.10 -0.6
3,813,401 + HP15_3617 0.10 -0.1
3,813,401 + HP15_3617 0.10 -0.8
3,813,409 - HP15_3617 0.11 -0.2
3,813,730 - HP15_3617 0.59 -0.3
3,813,822 + HP15_3617 0.73 -0.9
3,813,937 - -0.6
3,813,964 + +0.1
3,813,982 - +0.7
3,813,998 + +0.0
3,814,006 - +0.0
3,814,032 - +0.5
3,814,047 + +0.9
3,814,047 + -0.2
3,814,052 + -0.3
3,814,055 - +0.1
3,814,055 - -0.4
3,814,129 - -0.6
3,814,332 + HP15_3618 0.26 -0.2
3,814,412 + HP15_3618 0.33 -0.6
3,814,494 - HP15_3618 0.40 +0.1
3,814,504 - HP15_3618 0.41 -0.5
3,814,537 + HP15_3618 0.44 -0.8
3,814,537 + HP15_3618 0.44 -0.3
3,814,537 + HP15_3618 0.44 -0.6
3,814,537 + HP15_3618 0.44 -1.3
3,814,545 - HP15_3618 0.45 -0.7
3,814,545 - HP15_3618 0.45 +0.5
3,814,545 - HP15_3618 0.45 -0.4
3,814,657 - HP15_3618 0.55 -1.0
3,814,676 - HP15_3618 0.56 +0.5
3,814,790 + HP15_3618 0.66 +0.1
3,814,798 - HP15_3618 0.67 +0.2
3,814,798 - HP15_3618 0.67 +0.3
3,814,843 - HP15_3618 0.71 +1.0
3,814,852 + HP15_3618 0.71 +0.7
3,814,859 - HP15_3618 0.72 -1.1
3,814,861 + HP15_3618 0.72 -0.1
3,814,935 - HP15_3618 0.79 +0.0
3,814,942 + HP15_3618 0.79 +1.0
3,814,950 - HP15_3618 0.80 +0.1
3,814,986 + HP15_3618 0.83 +0.6
3,814,987 + HP15_3618 0.83 -0.6

Or see this region's nucleotide sequence