Experiment: m.b. acetate 175 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3616 and HP15_3617 are separated by 116 nucleotides HP15_3617 and HP15_3618 are separated by 24 nucleotides
HP15_3616: HP15_3616 - tRNA/rRNA methyltransferase (SpoU), at 3,812,489 to 3,813,217
_3616
HP15_3617: HP15_3617 - protein containing transglutaminase-like domain, at 3,813,334 to 3,814,002
_3617
HP15_3618: HP15_3618 - periplasmic sugar-binding domain protein, at 3,814,027 to 3,815,181
_3618
Position (kb)
3813
3814
3815 Strain fitness (log2 ratio)
-1
0
1 at 3812.378 kb on + strand at 3812.574 kb on + strand, within HP15_3616 at 3812.665 kb on + strand, within HP15_3616 at 3812.673 kb on - strand, within HP15_3616 at 3812.750 kb on + strand, within HP15_3616 at 3812.807 kb on + strand, within HP15_3616 at 3812.815 kb on - strand, within HP15_3616 at 3812.815 kb on - strand, within HP15_3616 at 3812.826 kb on - strand, within HP15_3616 at 3812.852 kb on - strand, within HP15_3616 at 3812.862 kb on - strand, within HP15_3616 at 3812.887 kb on - strand, within HP15_3616 at 3812.889 kb on + strand, within HP15_3616 at 3812.897 kb on - strand, within HP15_3616 at 3812.897 kb on - strand, within HP15_3616 at 3812.897 kb on - strand, within HP15_3616 at 3812.914 kb on + strand, within HP15_3616 at 3813.058 kb on - strand, within HP15_3616 at 3813.063 kb on - strand, within HP15_3616 at 3813.065 kb on - strand, within HP15_3616 at 3813.124 kb on + strand, within HP15_3616 at 3813.130 kb on - strand, within HP15_3616 at 3813.159 kb on + strand at 3813.159 kb on - strand at 3813.211 kb on + strand at 3813.219 kb on - strand at 3813.335 kb on - strand at 3813.354 kb on - strand at 3813.401 kb on + strand, within HP15_3617 at 3813.401 kb on + strand, within HP15_3617 at 3813.401 kb on + strand, within HP15_3617 at 3813.409 kb on - strand, within HP15_3617 at 3813.730 kb on - strand, within HP15_3617 at 3813.822 kb on + strand, within HP15_3617 at 3813.937 kb on - strand at 3813.964 kb on + strand at 3813.982 kb on - strand at 3813.998 kb on + strand at 3814.006 kb on - strand at 3814.032 kb on - strand at 3814.047 kb on + strand at 3814.047 kb on + strand at 3814.052 kb on + strand at 3814.055 kb on - strand at 3814.055 kb on - strand at 3814.129 kb on - strand at 3814.332 kb on + strand, within HP15_3618 at 3814.412 kb on + strand, within HP15_3618 at 3814.494 kb on - strand, within HP15_3618 at 3814.504 kb on - strand, within HP15_3618 at 3814.537 kb on + strand, within HP15_3618 at 3814.537 kb on + strand, within HP15_3618 at 3814.537 kb on + strand, within HP15_3618 at 3814.537 kb on + strand, within HP15_3618 at 3814.545 kb on - strand, within HP15_3618 at 3814.545 kb on - strand, within HP15_3618 at 3814.545 kb on - strand, within HP15_3618 at 3814.657 kb on - strand, within HP15_3618 at 3814.676 kb on - strand, within HP15_3618 at 3814.790 kb on + strand, within HP15_3618 at 3814.798 kb on - strand, within HP15_3618 at 3814.798 kb on - strand, within HP15_3618 at 3814.843 kb on - strand, within HP15_3618 at 3814.852 kb on + strand, within HP15_3618 at 3814.859 kb on - strand, within HP15_3618 at 3814.861 kb on + strand, within HP15_3618 at 3814.935 kb on - strand, within HP15_3618 at 3814.942 kb on + strand, within HP15_3618 at 3814.950 kb on - strand, within HP15_3618 at 3814.986 kb on + strand, within HP15_3618 at 3814.987 kb on + strand, within HP15_3618
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 175 mM remove 3,812,378 + -0.1 3,812,574 + HP15_3616 0.12 +0.7 3,812,665 + HP15_3616 0.24 +0.6 3,812,673 - HP15_3616 0.25 +0.1 3,812,750 + HP15_3616 0.36 -1.6 3,812,807 + HP15_3616 0.44 -0.8 3,812,815 - HP15_3616 0.45 +1.2 3,812,815 - HP15_3616 0.45 -0.2 3,812,826 - HP15_3616 0.46 +1.2 3,812,852 - HP15_3616 0.50 +1.0 3,812,862 - HP15_3616 0.51 -0.6 3,812,887 - HP15_3616 0.55 -0.0 3,812,889 + HP15_3616 0.55 +0.4 3,812,897 - HP15_3616 0.56 -0.1 3,812,897 - HP15_3616 0.56 -0.3 3,812,897 - HP15_3616 0.56 -1.0 3,812,914 + HP15_3616 0.58 -0.2 3,813,058 - HP15_3616 0.78 +0.8 3,813,063 - HP15_3616 0.79 -0.4 3,813,065 - HP15_3616 0.79 +1.3 3,813,124 + HP15_3616 0.87 +0.6 3,813,130 - HP15_3616 0.88 +0.9 3,813,159 + +0.9 3,813,159 - -1.1 3,813,211 + -0.0 3,813,219 - +0.8 3,813,335 - -0.6 3,813,354 - +0.6 3,813,401 + HP15_3617 0.10 -0.6 3,813,401 + HP15_3617 0.10 -0.1 3,813,401 + HP15_3617 0.10 -0.8 3,813,409 - HP15_3617 0.11 -0.2 3,813,730 - HP15_3617 0.59 -0.3 3,813,822 + HP15_3617 0.73 -0.9 3,813,937 - -0.6 3,813,964 + +0.1 3,813,982 - +0.7 3,813,998 + +0.0 3,814,006 - +0.0 3,814,032 - +0.5 3,814,047 + +0.9 3,814,047 + -0.2 3,814,052 + -0.3 3,814,055 - +0.1 3,814,055 - -0.4 3,814,129 - -0.6 3,814,332 + HP15_3618 0.26 -0.2 3,814,412 + HP15_3618 0.33 -0.6 3,814,494 - HP15_3618 0.40 +0.1 3,814,504 - HP15_3618 0.41 -0.5 3,814,537 + HP15_3618 0.44 -0.8 3,814,537 + HP15_3618 0.44 -0.3 3,814,537 + HP15_3618 0.44 -0.6 3,814,537 + HP15_3618 0.44 -1.3 3,814,545 - HP15_3618 0.45 -0.7 3,814,545 - HP15_3618 0.45 +0.5 3,814,545 - HP15_3618 0.45 -0.4 3,814,657 - HP15_3618 0.55 -1.0 3,814,676 - HP15_3618 0.56 +0.5 3,814,790 + HP15_3618 0.66 +0.1 3,814,798 - HP15_3618 0.67 +0.2 3,814,798 - HP15_3618 0.67 +0.3 3,814,843 - HP15_3618 0.71 +1.0 3,814,852 + HP15_3618 0.71 +0.7 3,814,859 - HP15_3618 0.72 -1.1 3,814,861 + HP15_3618 0.72 -0.1 3,814,935 - HP15_3618 0.79 +0.0 3,814,942 + HP15_3618 0.79 +1.0 3,814,950 - HP15_3618 0.80 +0.1 3,814,986 + HP15_3618 0.83 +0.6 3,814,987 + HP15_3618 0.83 -0.6
Or see this region's nucleotide sequence