Strain Fitness in Marinobacter adhaerens HP15 around HP15_3477

Experiment: m.b. acetate 175 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3475 and HP15_3476 are separated by 56 nucleotidesHP15_3476 and HP15_3477 are separated by 278 nucleotidesHP15_3477 and HP15_3478 are separated by 133 nucleotidesHP15_3478 and HP15_3480 are separated by 9 nucleotidesHP15_3480 and HP15_3479 overlap by 2 nucleotides HP15_3475: HP15_3475 - protein containing DUF877, at 3,663,427 to 3,664,908 _3475 HP15_3476: HP15_3476 - uncharacterized conserved protein UCP028301, at 3,664,965 to 3,665,462 _3476 HP15_3477: HP15_3477 - acyl-coA-binding protein, ACBP, at 3,665,741 to 3,666,001 _3477 HP15_3478: HP15_3478 - integron integrase-like protein, at 3,666,135 to 3,666,452 _3478 HP15_3480: HP15_3480 - conserved hypothetical protein, at 3,666,462 to 3,666,746 _3480 HP15_3479: HP15_3479 - secreted protein, at 3,666,745 to 3,666,882 _3479 Position (kb) 3665 3666 3667Strain fitness (log2 ratio) -1 0 1at 3664.795 kb on + strandat 3664.831 kb on + strandat 3664.840 kb on - strandat 3664.878 kb on - strandat 3664.880 kb on + strandat 3664.906 kb on - strandat 3665.091 kb on + strand, within HP15_3476at 3665.149 kb on - strand, within HP15_3476at 3665.151 kb on + strand, within HP15_3476at 3665.244 kb on + strand, within HP15_3476at 3665.251 kb on - strand, within HP15_3476at 3665.435 kb on - strandat 3665.531 kb on + strandat 3665.546 kb on - strandat 3665.782 kb on + strand, within HP15_3477at 3665.790 kb on - strand, within HP15_3477at 3665.852 kb on - strand, within HP15_3477at 3665.936 kb on + strand, within HP15_3477at 3665.961 kb on - strand, within HP15_3477at 3665.990 kb on + strandat 3665.991 kb on - strandat 3666.040 kb on + strandat 3666.081 kb on - strandat 3666.083 kb on + strandat 3666.151 kb on + strandat 3666.159 kb on - strandat 3666.161 kb on + strandat 3666.161 kb on + strandat 3666.185 kb on + strand, within HP15_3478at 3666.185 kb on + strand, within HP15_3478at 3666.185 kb on + strand, within HP15_3478at 3666.245 kb on - strand, within HP15_3478at 3666.304 kb on - strand, within HP15_3478at 3666.378 kb on - strand, within HP15_3478at 3666.512 kb on - strand, within HP15_3480at 3666.553 kb on - strand, within HP15_3480at 3666.600 kb on + strand, within HP15_3480at 3666.600 kb on + strand, within HP15_3480at 3666.608 kb on - strand, within HP15_3480at 3666.640 kb on - strand, within HP15_3480at 3666.791 kb on + strand, within HP15_3479at 3666.804 kb on - strand, within HP15_3479at 3666.876 kb on + strandat 3666.876 kb on + strandat 3666.876 kb on + strandat 3666.884 kb on - strandat 3666.907 kb on + strandat 3666.909 kb on - strandat 3666.913 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 175 mM
remove
3,664,795 + -0.1
3,664,831 + -0.1
3,664,840 - -0.2
3,664,878 - +0.1
3,664,880 + -0.2
3,664,906 - +0.2
3,665,091 + HP15_3476 0.25 -0.1
3,665,149 - HP15_3476 0.37 -0.7
3,665,151 + HP15_3476 0.37 +0.7
3,665,244 + HP15_3476 0.56 -0.2
3,665,251 - HP15_3476 0.57 +1.1
3,665,435 - +0.9
3,665,531 + -0.3
3,665,546 - -0.7
3,665,782 + HP15_3477 0.16 -0.1
3,665,790 - HP15_3477 0.19 -0.2
3,665,852 - HP15_3477 0.43 -0.1
3,665,936 + HP15_3477 0.75 -0.3
3,665,961 - HP15_3477 0.84 -0.1
3,665,990 + +1.0
3,665,991 - -0.5
3,666,040 + -0.2
3,666,081 - +0.0
3,666,083 + +0.9
3,666,151 + +1.0
3,666,159 - +0.7
3,666,161 + +1.4
3,666,161 + +0.4
3,666,185 + HP15_3478 0.16 -0.4
3,666,185 + HP15_3478 0.16 -0.1
3,666,185 + HP15_3478 0.16 -0.3
3,666,245 - HP15_3478 0.35 +0.2
3,666,304 - HP15_3478 0.53 +0.1
3,666,378 - HP15_3478 0.76 -0.1
3,666,512 - HP15_3480 0.18 +0.5
3,666,553 - HP15_3480 0.32 +0.1
3,666,600 + HP15_3480 0.48 -1.2
3,666,600 + HP15_3480 0.48 +0.8
3,666,608 - HP15_3480 0.51 -0.3
3,666,640 - HP15_3480 0.62 +0.1
3,666,791 + HP15_3479 0.33 +0.3
3,666,804 - HP15_3479 0.43 -0.8
3,666,876 + -0.4
3,666,876 + +0.8
3,666,876 + +1.0
3,666,884 - +0.2
3,666,907 + +0.9
3,666,909 - +0.9
3,666,913 + -0.2

Or see this region's nucleotide sequence