Experiment: m.b. acetate 175 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3475 and HP15_3476 are separated by 56 nucleotides HP15_3476 and HP15_3477 are separated by 278 nucleotides HP15_3477 and HP15_3478 are separated by 133 nucleotides HP15_3478 and HP15_3480 are separated by 9 nucleotides HP15_3480 and HP15_3479 overlap by 2 nucleotides
HP15_3475: HP15_3475 - protein containing DUF877, at 3,663,427 to 3,664,908
_3475
HP15_3476: HP15_3476 - uncharacterized conserved protein UCP028301, at 3,664,965 to 3,665,462
_3476
HP15_3477: HP15_3477 - acyl-coA-binding protein, ACBP, at 3,665,741 to 3,666,001
_3477
HP15_3478: HP15_3478 - integron integrase-like protein, at 3,666,135 to 3,666,452
_3478
HP15_3480: HP15_3480 - conserved hypothetical protein, at 3,666,462 to 3,666,746
_3480
HP15_3479: HP15_3479 - secreted protein, at 3,666,745 to 3,666,882
_3479
Position (kb)
3665
3666
3667 Strain fitness (log2 ratio)
-1
0
1 at 3664.795 kb on + strand at 3664.831 kb on + strand at 3664.840 kb on - strand at 3664.878 kb on - strand at 3664.880 kb on + strand at 3664.906 kb on - strand at 3665.091 kb on + strand, within HP15_3476 at 3665.149 kb on - strand, within HP15_3476 at 3665.151 kb on + strand, within HP15_3476 at 3665.244 kb on + strand, within HP15_3476 at 3665.251 kb on - strand, within HP15_3476 at 3665.435 kb on - strand at 3665.531 kb on + strand at 3665.546 kb on - strand at 3665.782 kb on + strand, within HP15_3477 at 3665.790 kb on - strand, within HP15_3477 at 3665.852 kb on - strand, within HP15_3477 at 3665.936 kb on + strand, within HP15_3477 at 3665.961 kb on - strand, within HP15_3477 at 3665.990 kb on + strand at 3665.991 kb on - strand at 3666.040 kb on + strand at 3666.081 kb on - strand at 3666.083 kb on + strand at 3666.151 kb on + strand at 3666.159 kb on - strand at 3666.161 kb on + strand at 3666.161 kb on + strand at 3666.185 kb on + strand, within HP15_3478 at 3666.185 kb on + strand, within HP15_3478 at 3666.185 kb on + strand, within HP15_3478 at 3666.245 kb on - strand, within HP15_3478 at 3666.304 kb on - strand, within HP15_3478 at 3666.378 kb on - strand, within HP15_3478 at 3666.512 kb on - strand, within HP15_3480 at 3666.553 kb on - strand, within HP15_3480 at 3666.600 kb on + strand, within HP15_3480 at 3666.600 kb on + strand, within HP15_3480 at 3666.608 kb on - strand, within HP15_3480 at 3666.640 kb on - strand, within HP15_3480 at 3666.791 kb on + strand, within HP15_3479 at 3666.804 kb on - strand, within HP15_3479 at 3666.876 kb on + strand at 3666.876 kb on + strand at 3666.876 kb on + strand at 3666.884 kb on - strand at 3666.907 kb on + strand at 3666.909 kb on - strand at 3666.913 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 175 mM remove 3,664,795 + -0.1 3,664,831 + -0.1 3,664,840 - -0.2 3,664,878 - +0.1 3,664,880 + -0.2 3,664,906 - +0.2 3,665,091 + HP15_3476 0.25 -0.1 3,665,149 - HP15_3476 0.37 -0.7 3,665,151 + HP15_3476 0.37 +0.7 3,665,244 + HP15_3476 0.56 -0.2 3,665,251 - HP15_3476 0.57 +1.1 3,665,435 - +0.9 3,665,531 + -0.3 3,665,546 - -0.7 3,665,782 + HP15_3477 0.16 -0.1 3,665,790 - HP15_3477 0.19 -0.2 3,665,852 - HP15_3477 0.43 -0.1 3,665,936 + HP15_3477 0.75 -0.3 3,665,961 - HP15_3477 0.84 -0.1 3,665,990 + +1.0 3,665,991 - -0.5 3,666,040 + -0.2 3,666,081 - +0.0 3,666,083 + +0.9 3,666,151 + +1.0 3,666,159 - +0.7 3,666,161 + +1.4 3,666,161 + +0.4 3,666,185 + HP15_3478 0.16 -0.4 3,666,185 + HP15_3478 0.16 -0.1 3,666,185 + HP15_3478 0.16 -0.3 3,666,245 - HP15_3478 0.35 +0.2 3,666,304 - HP15_3478 0.53 +0.1 3,666,378 - HP15_3478 0.76 -0.1 3,666,512 - HP15_3480 0.18 +0.5 3,666,553 - HP15_3480 0.32 +0.1 3,666,600 + HP15_3480 0.48 -1.2 3,666,600 + HP15_3480 0.48 +0.8 3,666,608 - HP15_3480 0.51 -0.3 3,666,640 - HP15_3480 0.62 +0.1 3,666,791 + HP15_3479 0.33 +0.3 3,666,804 - HP15_3479 0.43 -0.8 3,666,876 + -0.4 3,666,876 + +0.8 3,666,876 + +1.0 3,666,884 - +0.2 3,666,907 + +0.9 3,666,909 - +0.9 3,666,913 + -0.2
Or see this region's nucleotide sequence