Experiment: m.b. acetate 175 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2971 and HP15_2972 are separated by 215 nucleotides HP15_2972 and HP15_2973 are separated by 98 nucleotides HP15_2973 and HP15_2974 are separated by 166 nucleotides
HP15_2971: HP15_2971 - auxin efflux carrier, at 3,115,237 to 3,116,154
_2971
HP15_2972: HP15_2972 - cyclic nucleotide-binding protein, at 3,116,370 to 3,117,029
_2972
HP15_2973: HP15_2973 - flavoprotein wrbA, at 3,117,128 to 3,117,727
_2973
HP15_2974: HP15_2974 - channel protein, hemolysin III family, at 3,117,894 to 3,118,595
_2974
Position (kb)
3116
3117
3118 Strain fitness (log2 ratio)
-1
0
1 at 3115.406 kb on + strand, within HP15_2971 at 3115.406 kb on + strand, within HP15_2971 at 3115.425 kb on - strand, within HP15_2971 at 3115.447 kb on - strand, within HP15_2971 at 3115.463 kb on + strand, within HP15_2971 at 3115.466 kb on - strand, within HP15_2971 at 3115.570 kb on + strand, within HP15_2971 at 3115.660 kb on + strand, within HP15_2971 at 3115.668 kb on - strand, within HP15_2971 at 3115.721 kb on + strand, within HP15_2971 at 3115.758 kb on + strand, within HP15_2971 at 3115.766 kb on - strand, within HP15_2971 at 3115.821 kb on - strand, within HP15_2971 at 3115.864 kb on - strand, within HP15_2971 at 3115.960 kb on + strand, within HP15_2971 at 3116.060 kb on + strand, within HP15_2971 at 3116.160 kb on - strand at 3116.173 kb on + strand at 3116.291 kb on + strand at 3116.352 kb on - strand at 3116.403 kb on - strand at 3116.578 kb on + strand, within HP15_2972 at 3116.802 kb on + strand, within HP15_2972 at 3116.936 kb on + strand, within HP15_2972 at 3116.977 kb on + strand at 3117.022 kb on + strand at 3117.042 kb on + strand at 3117.265 kb on + strand, within HP15_2973 at 3117.489 kb on + strand, within HP15_2973 at 3117.537 kb on + strand, within HP15_2973 at 3117.654 kb on - strand, within HP15_2973 at 3117.668 kb on - strand at 3117.728 kb on + strand at 3117.775 kb on + strand at 3117.858 kb on + strand at 3117.947 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 175 mM remove 3,115,406 + HP15_2971 0.18 -0.0 3,115,406 + HP15_2971 0.18 -0.1 3,115,425 - HP15_2971 0.20 +0.6 3,115,447 - HP15_2971 0.23 +0.3 3,115,463 + HP15_2971 0.25 +0.8 3,115,466 - HP15_2971 0.25 +0.4 3,115,570 + HP15_2971 0.36 -0.1 3,115,660 + HP15_2971 0.46 +0.0 3,115,668 - HP15_2971 0.47 -0.5 3,115,721 + HP15_2971 0.53 +0.7 3,115,758 + HP15_2971 0.57 -0.0 3,115,766 - HP15_2971 0.58 -0.8 3,115,821 - HP15_2971 0.64 -0.7 3,115,864 - HP15_2971 0.68 +0.6 3,115,960 + HP15_2971 0.79 -1.0 3,116,060 + HP15_2971 0.90 +0.1 3,116,160 - -0.2 3,116,173 + -0.5 3,116,291 + -0.6 3,116,352 - +0.3 3,116,403 - -0.8 3,116,578 + HP15_2972 0.32 -0.4 3,116,802 + HP15_2972 0.65 -1.2 3,116,936 + HP15_2972 0.86 +0.4 3,116,977 + -0.4 3,117,022 + -0.4 3,117,042 + +1.5 3,117,265 + HP15_2973 0.23 +0.2 3,117,489 + HP15_2973 0.60 +0.8 3,117,537 + HP15_2973 0.68 +1.2 3,117,654 - HP15_2973 0.88 +0.2 3,117,668 - +0.6 3,117,728 + +0.7 3,117,775 + -0.1 3,117,858 + +0.9 3,117,947 - +0.5
Or see this region's nucleotide sequence