Experiment: m.b. acetate 175 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2792 and HP15_2793 are separated by 100 nucleotides HP15_2793 and HP15_2794 are separated by 135 nucleotides HP15_2794 and HP15_2795 are separated by 72 nucleotides
HP15_2792: HP15_2792 - transcriptional regulator MarR family protein, at 2,940,280 to 2,940,774
_2792
HP15_2793: HP15_2793 - GatB/Yqey domain protein, at 2,940,875 to 2,941,330
_2793
HP15_2794: HP15_2794 - L-allo-threonine aldolase, at 2,941,466 to 2,942,476
_2794
HP15_2795: HP15_2795 - transporter, BCCT family protein, at 2,942,549 to 2,944,144
_2795
Position (kb)
2941
2942
2943 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2940.526 kb on - strand, within HP15_2792 at 2940.579 kb on + strand, within HP15_2792 at 2940.593 kb on + strand, within HP15_2792 at 2940.664 kb on - strand, within HP15_2792 at 2940.674 kb on - strand, within HP15_2792 at 2940.758 kb on - strand at 2940.821 kb on + strand at 2940.829 kb on - strand at 2940.881 kb on + strand at 2940.937 kb on - strand, within HP15_2793 at 2940.974 kb on - strand, within HP15_2793 at 2941.050 kb on + strand, within HP15_2793 at 2941.058 kb on - strand, within HP15_2793 at 2941.060 kb on - strand, within HP15_2793 at 2941.306 kb on - strand at 2941.309 kb on + strand at 2941.418 kb on + strand at 2941.418 kb on + strand at 2941.421 kb on + strand at 2941.423 kb on + strand at 2941.482 kb on + strand at 2941.482 kb on + strand at 2941.520 kb on + strand at 2941.520 kb on + strand at 2941.520 kb on + strand at 2941.520 kb on + strand at 2941.528 kb on - strand at 2941.528 kb on - strand at 2941.538 kb on - strand at 2941.571 kb on - strand, within HP15_2794 at 2941.619 kb on + strand, within HP15_2794 at 2941.745 kb on + strand, within HP15_2794 at 2941.753 kb on - strand, within HP15_2794 at 2941.755 kb on - strand, within HP15_2794 at 2941.757 kb on + strand, within HP15_2794 at 2941.763 kb on - strand, within HP15_2794 at 2941.866 kb on + strand, within HP15_2794 at 2941.866 kb on + strand, within HP15_2794 at 2941.874 kb on - strand, within HP15_2794 at 2941.913 kb on + strand, within HP15_2794 at 2941.913 kb on + strand, within HP15_2794 at 2941.918 kb on + strand, within HP15_2794 at 2941.921 kb on - strand, within HP15_2794 at 2941.921 kb on - strand, within HP15_2794 at 2941.926 kb on - strand, within HP15_2794 at 2941.945 kb on - strand, within HP15_2794 at 2941.952 kb on - strand, within HP15_2794 at 2942.065 kb on - strand, within HP15_2794 at 2942.065 kb on - strand, within HP15_2794 at 2942.065 kb on - strand, within HP15_2794 at 2942.065 kb on - strand, within HP15_2794 at 2942.115 kb on + strand, within HP15_2794 at 2942.325 kb on - strand, within HP15_2794 at 2942.325 kb on - strand, within HP15_2794 at 2942.325 kb on - strand, within HP15_2794 at 2942.325 kb on - strand, within HP15_2794 at 2942.535 kb on + strand at 2942.539 kb on - strand at 2942.548 kb on - strand at 2942.608 kb on + strand at 2942.616 kb on - strand at 2942.655 kb on - strand at 2942.657 kb on - strand at 2942.657 kb on - strand at 2942.684 kb on - strand at 2942.684 kb on - strand at 2942.846 kb on - strand, within HP15_2795 at 2943.034 kb on - strand, within HP15_2795 at 2943.108 kb on - strand, within HP15_2795 at 2943.125 kb on + strand, within HP15_2795 at 2943.255 kb on - strand, within HP15_2795 at 2943.255 kb on - strand, within HP15_2795 at 2943.334 kb on - strand, within HP15_2795 at 2943.395 kb on + strand, within HP15_2795 at 2943.396 kb on - strand, within HP15_2795
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 175 mM remove 2,940,526 - HP15_2792 0.50 -0.3 2,940,579 + HP15_2792 0.60 +0.1 2,940,593 + HP15_2792 0.63 +0.3 2,940,664 - HP15_2792 0.78 -0.0 2,940,674 - HP15_2792 0.80 +0.8 2,940,758 - -0.6 2,940,821 + +0.3 2,940,829 - -0.6 2,940,881 + +0.4 2,940,937 - HP15_2793 0.14 -0.2 2,940,974 - HP15_2793 0.22 +0.3 2,941,050 + HP15_2793 0.38 +0.6 2,941,058 - HP15_2793 0.40 -0.1 2,941,060 - HP15_2793 0.41 -0.3 2,941,306 - -0.0 2,941,309 + -0.4 2,941,418 + +1.1 2,941,418 + +0.8 2,941,421 + +0.4 2,941,423 + -2.2 2,941,482 + +0.2 2,941,482 + -1.0 2,941,520 + +0.6 2,941,520 + -0.3 2,941,520 + +0.1 2,941,520 + -3.1 2,941,528 - +0.0 2,941,528 - -0.2 2,941,538 - +0.1 2,941,571 - HP15_2794 0.10 +0.6 2,941,619 + HP15_2794 0.15 -0.1 2,941,745 + HP15_2794 0.28 +0.7 2,941,753 - HP15_2794 0.28 -0.1 2,941,755 - HP15_2794 0.29 -0.1 2,941,757 + HP15_2794 0.29 -0.1 2,941,763 - HP15_2794 0.29 -0.0 2,941,866 + HP15_2794 0.40 -0.3 2,941,866 + HP15_2794 0.40 +0.4 2,941,874 - HP15_2794 0.40 +0.8 2,941,913 + HP15_2794 0.44 -0.5 2,941,913 + HP15_2794 0.44 +0.1 2,941,918 + HP15_2794 0.45 +1.2 2,941,921 - HP15_2794 0.45 +0.8 2,941,921 - HP15_2794 0.45 -1.5 2,941,926 - HP15_2794 0.45 +0.9 2,941,945 - HP15_2794 0.47 +0.2 2,941,952 - HP15_2794 0.48 +1.1 2,942,065 - HP15_2794 0.59 -0.3 2,942,065 - HP15_2794 0.59 +1.2 2,942,065 - HP15_2794 0.59 +0.4 2,942,065 - HP15_2794 0.59 +1.4 2,942,115 + HP15_2794 0.64 +1.5 2,942,325 - HP15_2794 0.85 -0.2 2,942,325 - HP15_2794 0.85 -0.1 2,942,325 - HP15_2794 0.85 -0.4 2,942,325 - HP15_2794 0.85 -0.1 2,942,535 + -1.4 2,942,539 - -0.0 2,942,548 - +1.0 2,942,608 + +0.5 2,942,616 - +0.2 2,942,655 - -0.4 2,942,657 - +0.3 2,942,657 - +0.1 2,942,684 - -0.8 2,942,684 - -0.1 2,942,846 - HP15_2795 0.19 -0.0 2,943,034 - HP15_2795 0.30 +0.3 2,943,108 - HP15_2795 0.35 +0.0 2,943,125 + HP15_2795 0.36 -0.2 2,943,255 - HP15_2795 0.44 -0.1 2,943,255 - HP15_2795 0.44 +0.5 2,943,334 - HP15_2795 0.49 +1.0 2,943,395 + HP15_2795 0.53 +0.8 2,943,396 - HP15_2795 0.53 +0.5
Or see this region's nucleotide sequence