Strain Fitness in Marinobacter adhaerens HP15 around HP15_2794

Experiment: m.b. acetate 175 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2792 and HP15_2793 are separated by 100 nucleotidesHP15_2793 and HP15_2794 are separated by 135 nucleotidesHP15_2794 and HP15_2795 are separated by 72 nucleotides HP15_2792: HP15_2792 - transcriptional regulator MarR family protein, at 2,940,280 to 2,940,774 _2792 HP15_2793: HP15_2793 - GatB/Yqey domain protein, at 2,940,875 to 2,941,330 _2793 HP15_2794: HP15_2794 - L-allo-threonine aldolase, at 2,941,466 to 2,942,476 _2794 HP15_2795: HP15_2795 - transporter, BCCT family protein, at 2,942,549 to 2,944,144 _2795 Position (kb) 2941 2942 2943Strain fitness (log2 ratio) -3 -2 -1 0 1at 2940.526 kb on - strand, within HP15_2792at 2940.579 kb on + strand, within HP15_2792at 2940.593 kb on + strand, within HP15_2792at 2940.664 kb on - strand, within HP15_2792at 2940.674 kb on - strand, within HP15_2792at 2940.758 kb on - strandat 2940.821 kb on + strandat 2940.829 kb on - strandat 2940.881 kb on + strandat 2940.937 kb on - strand, within HP15_2793at 2940.974 kb on - strand, within HP15_2793at 2941.050 kb on + strand, within HP15_2793at 2941.058 kb on - strand, within HP15_2793at 2941.060 kb on - strand, within HP15_2793at 2941.306 kb on - strandat 2941.309 kb on + strandat 2941.418 kb on + strandat 2941.418 kb on + strandat 2941.421 kb on + strandat 2941.423 kb on + strandat 2941.482 kb on + strandat 2941.482 kb on + strandat 2941.520 kb on + strandat 2941.520 kb on + strandat 2941.520 kb on + strandat 2941.520 kb on + strandat 2941.528 kb on - strandat 2941.528 kb on - strandat 2941.538 kb on - strandat 2941.571 kb on - strand, within HP15_2794at 2941.619 kb on + strand, within HP15_2794at 2941.745 kb on + strand, within HP15_2794at 2941.753 kb on - strand, within HP15_2794at 2941.755 kb on - strand, within HP15_2794at 2941.757 kb on + strand, within HP15_2794at 2941.763 kb on - strand, within HP15_2794at 2941.866 kb on + strand, within HP15_2794at 2941.866 kb on + strand, within HP15_2794at 2941.874 kb on - strand, within HP15_2794at 2941.913 kb on + strand, within HP15_2794at 2941.913 kb on + strand, within HP15_2794at 2941.918 kb on + strand, within HP15_2794at 2941.921 kb on - strand, within HP15_2794at 2941.921 kb on - strand, within HP15_2794at 2941.926 kb on - strand, within HP15_2794at 2941.945 kb on - strand, within HP15_2794at 2941.952 kb on - strand, within HP15_2794at 2942.065 kb on - strand, within HP15_2794at 2942.065 kb on - strand, within HP15_2794at 2942.065 kb on - strand, within HP15_2794at 2942.065 kb on - strand, within HP15_2794at 2942.115 kb on + strand, within HP15_2794at 2942.325 kb on - strand, within HP15_2794at 2942.325 kb on - strand, within HP15_2794at 2942.325 kb on - strand, within HP15_2794at 2942.325 kb on - strand, within HP15_2794at 2942.535 kb on + strandat 2942.539 kb on - strandat 2942.548 kb on - strandat 2942.608 kb on + strandat 2942.616 kb on - strandat 2942.655 kb on - strandat 2942.657 kb on - strandat 2942.657 kb on - strandat 2942.684 kb on - strandat 2942.684 kb on - strandat 2942.846 kb on - strand, within HP15_2795at 2943.034 kb on - strand, within HP15_2795at 2943.108 kb on - strand, within HP15_2795at 2943.125 kb on + strand, within HP15_2795at 2943.255 kb on - strand, within HP15_2795at 2943.255 kb on - strand, within HP15_2795at 2943.334 kb on - strand, within HP15_2795at 2943.395 kb on + strand, within HP15_2795at 2943.396 kb on - strand, within HP15_2795

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 175 mM
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2,940,526 - HP15_2792 0.50 -0.3
2,940,579 + HP15_2792 0.60 +0.1
2,940,593 + HP15_2792 0.63 +0.3
2,940,664 - HP15_2792 0.78 -0.0
2,940,674 - HP15_2792 0.80 +0.8
2,940,758 - -0.6
2,940,821 + +0.3
2,940,829 - -0.6
2,940,881 + +0.4
2,940,937 - HP15_2793 0.14 -0.2
2,940,974 - HP15_2793 0.22 +0.3
2,941,050 + HP15_2793 0.38 +0.6
2,941,058 - HP15_2793 0.40 -0.1
2,941,060 - HP15_2793 0.41 -0.3
2,941,306 - -0.0
2,941,309 + -0.4
2,941,418 + +1.1
2,941,418 + +0.8
2,941,421 + +0.4
2,941,423 + -2.2
2,941,482 + +0.2
2,941,482 + -1.0
2,941,520 + +0.6
2,941,520 + -0.3
2,941,520 + +0.1
2,941,520 + -3.1
2,941,528 - +0.0
2,941,528 - -0.2
2,941,538 - +0.1
2,941,571 - HP15_2794 0.10 +0.6
2,941,619 + HP15_2794 0.15 -0.1
2,941,745 + HP15_2794 0.28 +0.7
2,941,753 - HP15_2794 0.28 -0.1
2,941,755 - HP15_2794 0.29 -0.1
2,941,757 + HP15_2794 0.29 -0.1
2,941,763 - HP15_2794 0.29 -0.0
2,941,866 + HP15_2794 0.40 -0.3
2,941,866 + HP15_2794 0.40 +0.4
2,941,874 - HP15_2794 0.40 +0.8
2,941,913 + HP15_2794 0.44 -0.5
2,941,913 + HP15_2794 0.44 +0.1
2,941,918 + HP15_2794 0.45 +1.2
2,941,921 - HP15_2794 0.45 +0.8
2,941,921 - HP15_2794 0.45 -1.5
2,941,926 - HP15_2794 0.45 +0.9
2,941,945 - HP15_2794 0.47 +0.2
2,941,952 - HP15_2794 0.48 +1.1
2,942,065 - HP15_2794 0.59 -0.3
2,942,065 - HP15_2794 0.59 +1.2
2,942,065 - HP15_2794 0.59 +0.4
2,942,065 - HP15_2794 0.59 +1.4
2,942,115 + HP15_2794 0.64 +1.5
2,942,325 - HP15_2794 0.85 -0.2
2,942,325 - HP15_2794 0.85 -0.1
2,942,325 - HP15_2794 0.85 -0.4
2,942,325 - HP15_2794 0.85 -0.1
2,942,535 + -1.4
2,942,539 - -0.0
2,942,548 - +1.0
2,942,608 + +0.5
2,942,616 - +0.2
2,942,655 - -0.4
2,942,657 - +0.3
2,942,657 - +0.1
2,942,684 - -0.8
2,942,684 - -0.1
2,942,846 - HP15_2795 0.19 -0.0
2,943,034 - HP15_2795 0.30 +0.3
2,943,108 - HP15_2795 0.35 +0.0
2,943,125 + HP15_2795 0.36 -0.2
2,943,255 - HP15_2795 0.44 -0.1
2,943,255 - HP15_2795 0.44 +0.5
2,943,334 - HP15_2795 0.49 +1.0
2,943,395 + HP15_2795 0.53 +0.8
2,943,396 - HP15_2795 0.53 +0.5

Or see this region's nucleotide sequence