Strain Fitness in Marinobacter adhaerens HP15 around HP15_2294

Experiment: m.b. acetate 175 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2292 and HP15_2293 are separated by 133 nucleotidesHP15_2293 and HP15_2294 overlap by 8 nucleotidesHP15_2294 and HP15_2295 are separated by 170 nucleotidesHP15_2295 and HP15_2296 are separated by 18 nucleotides HP15_2292: HP15_2292 - purine-binding chemotaxis protein CheW, at 2,414,297 to 2,414,785 _2292 HP15_2293: HP15_2293 - protein containing CheW-like domain, at 2,414,919 to 2,415,728 _2293 HP15_2294: HP15_2294 - chromosome partitioning protein ParA, at 2,415,721 to 2,416,542 _2294 HP15_2295: HP15_2295 - flagellar motor protein MotD, at 2,416,713 to 2,417,495 _2295 HP15_2296: HP15_2296 - chemotaxis protein MotA, at 2,417,514 to 2,418,260 _2296 Position (kb) 2415 2416 2417Strain fitness (log2 ratio) -1 0 1 2at 2414.729 kb on + strand, within HP15_2292at 2414.748 kb on + strandat 2414.853 kb on + strandat 2414.896 kb on - strandat 2414.930 kb on - strandat 2414.966 kb on + strandat 2414.997 kb on + strandat 2415.082 kb on - strand, within HP15_2293at 2415.089 kb on - strand, within HP15_2293at 2415.092 kb on + strand, within HP15_2293at 2415.186 kb on - strand, within HP15_2293at 2415.186 kb on - strand, within HP15_2293at 2415.256 kb on - strand, within HP15_2293at 2415.308 kb on + strand, within HP15_2293at 2415.368 kb on + strand, within HP15_2293at 2415.376 kb on - strand, within HP15_2293at 2415.515 kb on + strand, within HP15_2293at 2415.601 kb on - strand, within HP15_2293at 2415.738 kb on + strandat 2415.825 kb on + strand, within HP15_2294at 2415.825 kb on + strand, within HP15_2294at 2415.833 kb on - strand, within HP15_2294at 2416.008 kb on - strand, within HP15_2294at 2416.024 kb on - strand, within HP15_2294at 2416.029 kb on + strand, within HP15_2294at 2416.072 kb on + strand, within HP15_2294at 2416.080 kb on - strand, within HP15_2294at 2416.096 kb on + strand, within HP15_2294at 2416.106 kb on + strand, within HP15_2294at 2416.146 kb on + strand, within HP15_2294at 2416.191 kb on + strand, within HP15_2294at 2416.191 kb on + strand, within HP15_2294at 2416.191 kb on + strand, within HP15_2294at 2416.236 kb on + strand, within HP15_2294at 2416.321 kb on - strand, within HP15_2294at 2416.325 kb on + strand, within HP15_2294at 2416.378 kb on - strand, within HP15_2294at 2416.520 kb on + strandat 2416.520 kb on + strandat 2416.601 kb on + strandat 2416.601 kb on + strandat 2416.668 kb on - strandat 2416.693 kb on - strandat 2416.820 kb on + strand, within HP15_2295at 2416.878 kb on + strand, within HP15_2295at 2416.997 kb on - strand, within HP15_2295at 2416.997 kb on - strand, within HP15_2295at 2417.280 kb on - strand, within HP15_2295at 2417.300 kb on + strand, within HP15_2295at 2417.318 kb on - strand, within HP15_2295at 2417.320 kb on + strand, within HP15_2295at 2417.394 kb on - strand, within HP15_2295

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 175 mM
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2,414,729 + HP15_2292 0.88 -0.1
2,414,748 + +1.4
2,414,853 + +0.5
2,414,896 - +0.9
2,414,930 - +0.8
2,414,966 + +0.0
2,414,997 + +0.2
2,415,082 - HP15_2293 0.20 +0.2
2,415,089 - HP15_2293 0.21 -0.4
2,415,092 + HP15_2293 0.21 +1.8
2,415,186 - HP15_2293 0.33 +0.2
2,415,186 - HP15_2293 0.33 +1.6
2,415,256 - HP15_2293 0.42 +1.0
2,415,308 + HP15_2293 0.48 -0.2
2,415,368 + HP15_2293 0.55 +2.5
2,415,376 - HP15_2293 0.56 +1.0
2,415,515 + HP15_2293 0.74 +1.1
2,415,601 - HP15_2293 0.84 +1.0
2,415,738 + +1.3
2,415,825 + HP15_2294 0.13 +1.1
2,415,825 + HP15_2294 0.13 +1.4
2,415,833 - HP15_2294 0.14 +0.0
2,416,008 - HP15_2294 0.35 +1.2
2,416,024 - HP15_2294 0.37 +1.6
2,416,029 + HP15_2294 0.37 +1.1
2,416,072 + HP15_2294 0.43 +0.9
2,416,080 - HP15_2294 0.44 +1.9
2,416,096 + HP15_2294 0.46 +0.5
2,416,106 + HP15_2294 0.47 +1.6
2,416,146 + HP15_2294 0.52 +2.0
2,416,191 + HP15_2294 0.57 +0.8
2,416,191 + HP15_2294 0.57 +0.8
2,416,191 + HP15_2294 0.57 +1.4
2,416,236 + HP15_2294 0.63 +0.7
2,416,321 - HP15_2294 0.73 +0.2
2,416,325 + HP15_2294 0.73 +0.7
2,416,378 - HP15_2294 0.80 +0.4
2,416,520 + +1.2
2,416,520 + +1.3
2,416,601 + -0.4
2,416,601 + +0.6
2,416,668 - +0.9
2,416,693 - +0.1
2,416,820 + HP15_2295 0.14 +0.6
2,416,878 + HP15_2295 0.21 +1.9
2,416,997 - HP15_2295 0.36 +2.4
2,416,997 - HP15_2295 0.36 +1.5
2,417,280 - HP15_2295 0.72 +1.6
2,417,300 + HP15_2295 0.75 +1.3
2,417,318 - HP15_2295 0.77 +2.6
2,417,320 + HP15_2295 0.78 +1.0
2,417,394 - HP15_2295 0.87 +0.2

Or see this region's nucleotide sequence