Experiment: m.b. acetate 175 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1816 and HP15_1817 are separated by 87 nucleotides HP15_1817 and HP15_1818 overlap by 1 nucleotides HP15_1818 and HP15_1819 are separated by 12 nucleotides
HP15_1816: HP15_1816 - seryl-tRNA synthetase, at 1,910,643 to 1,911,917
_1816
HP15_1817: HP15_1817 - recombination factor protein RarA, at 1,912,005 to 1,913,342
_1817
HP15_1818: HP15_1818 - outer-membrane lipoprotein carrier protein precursor, at 1,913,342 to 1,913,989
_1818
HP15_1819: HP15_1819 - DNA translocase FtsK, at 1,914,002 to 1,916,584
_1819
Position (kb)
1912
1913
1914 Strain fitness (log2 ratio)
-1
0
1
2 at 1912.016 kb on - strand at 1912.226 kb on - strand, within HP15_1817 at 1912.364 kb on + strand, within HP15_1817 at 1912.476 kb on + strand, within HP15_1817 at 1912.538 kb on + strand, within HP15_1817 at 1912.538 kb on + strand, within HP15_1817 at 1912.567 kb on + strand, within HP15_1817 at 1912.642 kb on - strand, within HP15_1817 at 1912.796 kb on - strand, within HP15_1817 at 1912.901 kb on - strand, within HP15_1817 at 1913.164 kb on + strand, within HP15_1817 at 1913.197 kb on + strand, within HP15_1817 at 1913.207 kb on + strand, within HP15_1817 at 1913.215 kb on - strand at 1913.215 kb on - strand at 1913.347 kb on - strand at 1913.991 kb on - strand at 1913.999 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 175 mM remove 1,912,016 - +0.1 1,912,226 - HP15_1817 0.17 -0.2 1,912,364 + HP15_1817 0.27 -0.3 1,912,476 + HP15_1817 0.35 -0.6 1,912,538 + HP15_1817 0.40 -0.5 1,912,538 + HP15_1817 0.40 -0.8 1,912,567 + HP15_1817 0.42 -0.8 1,912,642 - HP15_1817 0.48 -0.8 1,912,796 - HP15_1817 0.59 +0.6 1,912,901 - HP15_1817 0.67 +0.1 1,913,164 + HP15_1817 0.87 -1.4 1,913,197 + HP15_1817 0.89 +0.0 1,913,207 + HP15_1817 0.90 -0.1 1,913,215 - -0.2 1,913,215 - -0.7 1,913,347 - +1.0 1,913,991 - +0.7 1,913,999 + +2.6
Or see this region's nucleotide sequence