Strain Fitness in Marinobacter adhaerens HP15 around HP15_1817

Experiment: m.b. acetate 175 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1816 and HP15_1817 are separated by 87 nucleotidesHP15_1817 and HP15_1818 overlap by 1 nucleotidesHP15_1818 and HP15_1819 are separated by 12 nucleotides HP15_1816: HP15_1816 - seryl-tRNA synthetase, at 1,910,643 to 1,911,917 _1816 HP15_1817: HP15_1817 - recombination factor protein RarA, at 1,912,005 to 1,913,342 _1817 HP15_1818: HP15_1818 - outer-membrane lipoprotein carrier protein precursor, at 1,913,342 to 1,913,989 _1818 HP15_1819: HP15_1819 - DNA translocase FtsK, at 1,914,002 to 1,916,584 _1819 Position (kb) 1912 1913 1914Strain fitness (log2 ratio) -1 0 1 2at 1912.016 kb on - strandat 1912.226 kb on - strand, within HP15_1817at 1912.364 kb on + strand, within HP15_1817at 1912.476 kb on + strand, within HP15_1817at 1912.538 kb on + strand, within HP15_1817at 1912.538 kb on + strand, within HP15_1817at 1912.567 kb on + strand, within HP15_1817at 1912.642 kb on - strand, within HP15_1817at 1912.796 kb on - strand, within HP15_1817at 1912.901 kb on - strand, within HP15_1817at 1913.164 kb on + strand, within HP15_1817at 1913.197 kb on + strand, within HP15_1817at 1913.207 kb on + strand, within HP15_1817at 1913.215 kb on - strandat 1913.215 kb on - strandat 1913.347 kb on - strandat 1913.991 kb on - strandat 1913.999 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 175 mM
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1,912,016 - +0.1
1,912,226 - HP15_1817 0.17 -0.2
1,912,364 + HP15_1817 0.27 -0.3
1,912,476 + HP15_1817 0.35 -0.6
1,912,538 + HP15_1817 0.40 -0.5
1,912,538 + HP15_1817 0.40 -0.8
1,912,567 + HP15_1817 0.42 -0.8
1,912,642 - HP15_1817 0.48 -0.8
1,912,796 - HP15_1817 0.59 +0.6
1,912,901 - HP15_1817 0.67 +0.1
1,913,164 + HP15_1817 0.87 -1.4
1,913,197 + HP15_1817 0.89 +0.0
1,913,207 + HP15_1817 0.90 -0.1
1,913,215 - -0.2
1,913,215 - -0.7
1,913,347 - +1.0
1,913,991 - +0.7
1,913,999 + +2.6

Or see this region's nucleotide sequence