Strain Fitness in Shewanella amazonensis SB2B around Sama_2096

Experiment: Cisplatin 0.025 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.025 mg/ml
2,539,590	+		Sama_2095	0.36	-0.5
2,539,590	+		Sama_2095	0.36	-0.4
2,539,590	+		Sama_2095	0.36	+1.0
2,539,590	+		Sama_2095	0.36	-1.2
2,539,590	+		Sama_2095	0.36	+1.6
2,539,590	+		Sama_2095	0.36	-1.8
2,539,590	+		Sama_2095	0.36	+1.0
2,539,590	+		Sama_2095	0.36	+0.5
2,539,590	+		Sama_2095	0.36	+0.3
2,539,590	+		Sama_2095	0.36	+1.8
2,539,590	+		Sama_2095	0.36	-0.7
2,539,590	+		Sama_2095	0.36	+0.8
2,539,590	+		Sama_2095	0.36	+0.9
2,539,591	-		Sama_2095	0.36	+1.5
2,539,591	-		Sama_2095	0.36	+2.8
2,539,591	-		Sama_2095	0.36	-0.4
2,539,591	-		Sama_2095	0.36	+0.8
2,539,591	-		Sama_2095	0.36	+1.3
2,539,591	-		Sama_2095	0.36	-0.1
2,539,591	-		Sama_2095	0.36	-0.2
2,539,591	-		Sama_2095	0.36	-0.5
2,539,591	-		Sama_2095	0.36	+1.6
2,539,591	-		Sama_2095	0.36	-1.4
2,539,591	-		Sama_2095	0.36	-0.5
2,539,591	-		Sama_2095	0.36	-0.3
2,539,591	-		Sama_2095	0.36	+0.9
2,539,592	+		Sama_2095	0.36	+0.1
2,539,635	-		Sama_2095	0.39	+1.2
2,539,704	-		Sama_2095	0.45	-1.7
2,539,737	-		Sama_2095	0.47	-0.0
2,539,760	+		Sama_2095	0.49	+1.0
2,539,761	-		Sama_2095	0.49	+0.8
2,539,773	+		Sama_2095	0.50	-0.0
2,539,773	+		Sama_2095	0.50	-0.0
2,539,774	-		Sama_2095	0.50	-0.9
2,539,774	-		Sama_2095	0.50	-0.2
2,539,774	-		Sama_2095	0.50	-0.4
2,539,917	-		Sama_2095	0.61	-2.1
2,539,917	-		Sama_2095	0.61	+1.2
2,539,964	+		Sama_2095	0.64	-1.0
2,539,965	-		Sama_2095	0.64	-2.5
2,540,006	+		Sama_2095	0.67	+0.2
2,540,007	-		Sama_2095	0.68	+1.7
2,540,100	-		Sama_2095	0.75	+0.3
2,540,102	+		Sama_2095	0.75	-0.2
2,540,103	-		Sama_2095	0.75	-0.4
2,540,103	-		Sama_2095	0.75	+1.8
2,540,134	+		Sama_2095	0.77	-0.0
2,540,144	+		Sama_2095	0.78	-1.6
2,540,144	+		Sama_2095	0.78	+1.6
2,540,145	-		Sama_2095	0.78	-0.5
2,540,175	-		Sama_2095	0.80	-1.5
2,540,175	-		Sama_2095	0.80	-0.0
2,540,177	+		Sama_2095	0.80	-1.1
2,540,199	+		Sama_2095	0.82	+0.5
2,540,199	+		Sama_2095	0.82	+0.1
2,540,199	+		Sama_2095	0.82	-1.5
2,540,199	+		Sama_2095	0.82	-1.9
2,540,199	+		Sama_2095	0.82	-0.2
2,540,199	+		Sama_2095	0.82	-2.5
2,540,199	+		Sama_2095	0.82	+0.0
2,540,199	+		Sama_2095	0.82	+0.5
2,540,199	+		Sama_2095	0.82	+1.4
2,540,199	+		Sama_2095	0.82	-0.8
2,540,199	+		Sama_2095	0.82	+1.2
2,540,200	-		Sama_2095	0.82	-1.3
2,540,200	-		Sama_2095	0.82	-2.2
2,540,200	-		Sama_2095	0.82	+1.4
2,540,200	-		Sama_2095	0.82	+1.2
2,540,200	-		Sama_2095	0.82	-1.7
2,540,200	-		Sama_2095	0.82	-0.2
2,540,328	-				+0.8
2,540,328	-				-0.8
2,540,351	+				-0.2
2,540,385	+				-0.0
2,540,385	+				+0.8
2,540,431	+				-1.4
2,540,431	+				-0.7
2,540,431	+				+0.8
2,540,431	+				-0.9
2,540,432	-				+1.0
2,540,432	-				-0.2
2,540,432	-				-0.0
2,540,445	+				-0.2
2,540,445	+				-0.3
2,540,450	+				+0.4
2,540,450	+				+0.5
2,540,459	+				-1.0
2,540,460	-				+0.2
2,540,516	-				+0.2
2,540,516	-				-0.8
2,540,526	-				+1.3
2,540,526	-				+0.2
2,540,526	-				-0.4
2,540,526	-				+1.0
2,540,615	+	upp	Sama_2096	0.15	-0.2
2,540,698	-	upp	Sama_2096	0.28	+1.2
2,540,698	-	upp	Sama_2096	0.28	-1.4
2,540,847	-	upp	Sama_2096	0.52	-1.6
2,540,847	-	upp	Sama_2096	0.52	-0.3
2,540,851	-	upp	Sama_2096	0.52	+0.8
2,540,854	+	upp	Sama_2096	0.53	-0.8
2,540,854	+	upp	Sama_2096	0.53	+1.9
2,540,855	-	upp	Sama_2096	0.53	-1.2
2,540,855	-	upp	Sama_2096	0.53	+0.7
2,540,855	-	upp	Sama_2096	0.53	+0.5
2,540,880	+	upp	Sama_2096	0.57	-1.2
2,540,926	-	upp	Sama_2096	0.64	-2.4
2,540,926	-	upp	Sama_2096	0.64	+0.2
2,540,932	+	upp	Sama_2096	0.65	+0.8
2,540,932	+	upp	Sama_2096	0.65	-1.3
2,540,933	-	upp	Sama_2096	0.65	+0.5
2,540,933	-	upp	Sama_2096	0.65	-0.2
2,541,011	-	upp	Sama_2096	0.78	-0.7
2,541,011	-	upp	Sama_2096	0.78	-1.3
2,541,029	+	upp	Sama_2096	0.81	+1.2
2,541,030	-	upp	Sama_2096	0.81	-1.1
2,541,030	-	upp	Sama_2096	0.81	-0.7
2,541,030	-	upp	Sama_2096	0.81	-1.0
2,541,155	-				+0.6
2,541,155	-				-1.2
2,541,155	-				+0.5
2,541,155	-				-2.0
2,541,155	-				-0.0
2,541,330	+				+0.2
2,541,330	+				+0.8
2,541,362	+				-1.1
2,541,362	+				+1.1
2,541,367	+				-0.0
2,541,367	+				-0.8
2,541,367	+				+1.0
2,541,368	-				+0.5
2,541,368	-				+0.3
2,541,368	-				-0.0
2,541,370	+				+1.8
2,541,370	+				-0.7
2,541,370	+				+1.4
2,541,371	-				-0.2
2,541,407	+				-0.3
2,541,407	+				+0.8
2,541,408	-				+2.2
2,541,408	-				-0.4
2,541,410	-				+0.7
2,541,410	-				+0.4
2,541,410	-				+0.2
2,541,545	+		Sama_2097	0.16	+1.8
2,541,545	+		Sama_2097	0.16	+2.2
2,541,545	+		Sama_2097	0.16	+2.6
2,541,545	+		Sama_2097	0.16	+1.2
2,541,545	+		Sama_2097	0.16	+1.6
2,541,545	+		Sama_2097	0.16	-1.0
2,541,546	-		Sama_2097	0.16	+0.5
2,541,634	+		Sama_2097	0.24	-0.5
2,541,705	-		Sama_2097	0.31	-0.4
2,541,705	-		Sama_2097	0.31	-0.7
2,541,707	+		Sama_2097	0.31	+1.1
2,541,707	+		Sama_2097	0.31	-0.4
2,541,708	-		Sama_2097	0.31	-0.5
2,541,708	-		Sama_2097	0.31	+1.8
2,541,729	+		Sama_2097	0.33	+1.9
2,541,730	-		Sama_2097	0.33	-1.6
2,541,748	-		Sama_2097	0.35	-1.5
2,541,750	+		Sama_2097	0.35	+0.8
2,541,750	+		Sama_2097	0.35	+0.2
2,541,827	+		Sama_2097	0.43	+2.5
2,541,827	+		Sama_2097	0.43	+1.8
2,541,827	+		Sama_2097	0.43	-0.0
2,541,827	+		Sama_2097	0.43	-0.9
2,541,827	+		Sama_2097	0.43	+0.8
2,541,842	+		Sama_2097	0.44	+0.6
2,541,864	+		Sama_2097	0.46	-0.5
2,541,906	+		Sama_2097	0.50	+0.5
2,541,981	+		Sama_2097	0.58	+0.2
2,541,981	+		Sama_2097	0.58	+1.0
2,542,064	+		Sama_2097	0.66	-0.5
2,542,104	+		Sama_2097	0.69	+1.2