Strain Fitness in Shewanella amazonensis SB2B around Sama_2038

Experiment: Cisplatin 0.025 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.025 mg/ml
2,473,881	+		Sama_2036	0.80	+0.8
2,473,881	+		Sama_2036	0.80	+0.7
2,473,881	+		Sama_2036	0.80	-1.7
2,473,881	+		Sama_2036	0.80	-0.2
2,473,881	+		Sama_2036	0.80	-0.4
2,473,881	+		Sama_2036	0.80	-0.7
2,473,881	+		Sama_2036	0.80	-0.2
2,473,882	-		Sama_2036	0.80	-0.1
2,473,882	-		Sama_2036	0.80	+0.8
2,473,882	-		Sama_2036	0.80	+0.5
2,473,882	-		Sama_2036	0.80	-0.9
2,473,883	+		Sama_2036	0.81	-2.4
2,473,883	+		Sama_2036	0.81	-0.8
2,473,883	+		Sama_2036	0.81	+1.5
2,473,883	+		Sama_2036	0.81	-1.0
2,473,883	+		Sama_2036	0.81	+1.2
2,473,883	+		Sama_2036	0.81	-0.8
2,473,883	+		Sama_2036	0.81	+0.6
2,473,883	+		Sama_2036	0.81	-0.5
2,473,883	+		Sama_2036	0.81	-0.9
2,473,884	-		Sama_2036	0.81	+2.1
2,473,884	-		Sama_2036	0.81	-1.4
2,473,884	-		Sama_2036	0.81	+0.2
2,473,884	-		Sama_2036	0.81	-0.1
2,473,884	-		Sama_2036	0.81	-1.8
2,473,884	-		Sama_2036	0.81	-1.1
2,473,884	-		Sama_2036	0.81	-1.0
2,473,884	-		Sama_2036	0.81	+1.7
2,474,006	+				+2.1
2,474,200	+		Sama_2037	0.25	+5.4
2,474,207	+		Sama_2037	0.26	+8.4
2,474,321	+		Sama_2037	0.41	+9.9
2,474,353	+		Sama_2037	0.45	+12.5
2,474,409	+		Sama_2037	0.52	+3.3
2,474,474	+		Sama_2037	0.60	+13.3
2,474,474	+		Sama_2037	0.60	+4.1
2,474,485	+		Sama_2037	0.61	+2.1
2,474,576	+		Sama_2037	0.73	+7.5
2,474,576	+		Sama_2037	0.73	+2.0
2,474,634	+		Sama_2037	0.80	+0.4
2,474,651	+		Sama_2037	0.82	+3.1
2,474,770	+				-0.2
2,474,784	+				+0.2
2,474,784	+				-0.1
2,474,785	-				+1.6
2,474,791	-				+1.2
2,474,804	+				-0.7
2,474,804	+				+0.5
2,474,820	+				+1.8
2,474,820	+				-1.9
2,474,821	-				-0.4
2,474,821	-				-0.2
2,474,842	+				-1.4
2,474,868	+				-1.6
2,474,869	-				-0.4
2,474,950	-				-1.5
2,474,974	-				-1.2
2,474,974	-				+0.8
2,474,988	+		Sama_2038	0.10	-1.4
2,474,988	+		Sama_2038	0.10	+0.8
2,474,988	+		Sama_2038	0.10	+0.8
2,474,989	-		Sama_2038	0.10	+0.7
2,474,989	-		Sama_2038	0.10	-1.7
2,475,017	+		Sama_2038	0.13	-0.8
2,475,018	-		Sama_2038	0.13	-0.0
2,475,164	+		Sama_2038	0.25	-0.4
2,475,165	-		Sama_2038	0.25	-1.2
2,475,165	-		Sama_2038	0.25	-1.6
2,475,165	-		Sama_2038	0.25	-0.5
2,475,165	-		Sama_2038	0.25	-0.1
2,475,186	-		Sama_2038	0.26	-1.2
2,475,192	+		Sama_2038	0.27	-0.0
2,475,193	-		Sama_2038	0.27	+0.2
2,475,193	-		Sama_2038	0.27	+0.1
2,475,193	-		Sama_2038	0.27	-0.9
2,475,263	-		Sama_2038	0.33	-1.5
2,475,309	+		Sama_2038	0.37	+0.2
2,475,310	-		Sama_2038	0.37	-0.5
2,475,310	-		Sama_2038	0.37	-0.3
2,475,310	-		Sama_2038	0.37	+2.2
2,475,314	-		Sama_2038	0.37	-1.3
2,475,343	+		Sama_2038	0.39	-0.1
2,475,344	-		Sama_2038	0.39	+0.1
2,475,429	+		Sama_2038	0.46	-0.2
2,475,429	+		Sama_2038	0.46	-1.0
2,475,430	-		Sama_2038	0.46	-1.1
2,475,430	-		Sama_2038	0.46	-0.7
2,475,430	-		Sama_2038	0.46	+0.5
2,475,553	+		Sama_2038	0.56	-2.2
2,475,560	+		Sama_2038	0.57	+0.6
2,475,560	+		Sama_2038	0.57	+0.2
2,475,614	+		Sama_2038	0.61	-1.7
2,475,614	+		Sama_2038	0.61	+0.2
2,475,615	-		Sama_2038	0.61	-0.8
2,475,652	+		Sama_2038	0.64	-0.7
2,475,652	+		Sama_2038	0.64	+0.2
2,475,653	-		Sama_2038	0.65	-0.2
2,475,698	-		Sama_2038	0.68	-0.5
2,475,771	-		Sama_2038	0.74	-0.1
2,475,835	+		Sama_2038	0.79	+0.5
2,475,836	-		Sama_2038	0.79	+2.4
2,475,836	-		Sama_2038	0.79	-1.6
2,475,836	-		Sama_2038	0.79	+0.1
2,476,013	-				+0.9
2,476,133	-				-2.2
2,476,135	-				-1.1
2,476,135	-				-1.7
2,476,135	-				-1.8
2,476,135	-				-0.1
2,476,135	-				+2.0
2,476,152	+				+0.8
2,476,153	-				-0.2
2,476,153	-				+4.1
2,476,157	+				-2.3
2,476,157	+				+2.2
2,476,168	-				-1.3
2,476,198	-				-0.1
2,476,323	-	yebU	Sama_2039	0.11	+0.9
2,476,323	-	yebU	Sama_2039	0.11	+2.1
2,476,426	+	yebU	Sama_2039	0.18	+0.6
2,476,520	+	yebU	Sama_2039	0.25	+0.4
2,476,520	+	yebU	Sama_2039	0.25	+0.3
2,476,598	-	yebU	Sama_2039	0.31	+0.2
2,476,622	+	yebU	Sama_2039	0.32	+0.2
2,476,761	+	yebU	Sama_2039	0.42	+0.8
2,476,761	+	yebU	Sama_2039	0.42	+1.5
2,476,761	+	yebU	Sama_2039	0.42	-0.7
2,476,931	+	yebU	Sama_2039	0.54	-1.1
2,476,931	+	yebU	Sama_2039	0.54	-0.5
2,476,983	+	yebU	Sama_2039	0.58	+1.2
2,476,984	-	yebU	Sama_2039	0.58	-1.1
2,477,070	+	yebU	Sama_2039	0.64	+1.0