Strain Fitness in Shewanella amazonensis SB2B around Sama_1901

Experiment: Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1900 and Sama_1901 are separated by 1 nucleotidesSama_1901 and Sama_1902 overlap by 4 nucleotides Sama_1900: Sama_1900 - exodeoxyribonuclease V, gamma subunit (RefSeq), at 2,318,577 to 2,322,068 _1900 Sama_1901: Sama_1901 - exodeoxyribonuclease V, beta subunit (RefSeq), at 2,322,070 to 2,325,744 _1901 Sama_1902: Sama_1902 - exodeoxyribonuclease V (RefSeq), at 2,325,741 to 2,327,636 _1902 Position (kb) 2322 2323 2324 2325 2326Strain fitness (log2 ratio) -1 0 1at 2322.038 kb on + strandat 2322.066 kb on + strandat 2325.726 kb on + strandat 2325.734 kb on + strandat 2325.740 kb on + strandat 2325.740 kb on + strandat 2325.746 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.025 mg/ml
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2,322,038 + +0.7
2,322,066 + -0.1
2,325,726 + +0.9
2,325,734 + -1.2
2,325,740 + +0.8
2,325,740 + +1.2
2,325,746 - +0.2

Or see this region's nucleotide sequence