Strain Fitness in Shewanella amazonensis SB2B around Sama_1871

Experiment: Cisplatin 0.025 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.025 mg/ml
2,280,319	+	fadE	Sama_1870	0.66	-1.6
2,280,355	+	fadE	Sama_1870	0.67	+1.8
2,280,355	+	fadE	Sama_1870	0.67	+2.0
2,280,356	-	fadE	Sama_1870	0.67	-0.5
2,280,356	-	fadE	Sama_1870	0.67	-0.8
2,280,444	-	fadE	Sama_1870	0.71	-0.4
2,280,529	+	fadE	Sama_1870	0.74	+0.8
2,280,529	+	fadE	Sama_1870	0.74	+1.4
2,280,538	+	fadE	Sama_1870	0.75	-0.8
2,280,539	-	fadE	Sama_1870	0.75	+0.5
2,280,575	+	fadE	Sama_1870	0.76	-0.2
2,280,575	+	fadE	Sama_1870	0.76	+1.1
2,280,576	-	fadE	Sama_1870	0.76	-0.4
2,280,603	-	fadE	Sama_1870	0.77	-1.7
2,280,783	+	fadE	Sama_1870	0.85	-1.7
2,280,783	+	fadE	Sama_1870	0.85	-1.2
2,280,784	-	fadE	Sama_1870	0.85	-1.7
2,280,932	+				-1.6
2,280,933	-				+0.5
2,280,942	+				-1.4
2,280,942	+				+0.6
2,280,943	-				+0.2
2,280,943	-				+2.2
2,281,004	-				+1.2
2,281,151	+				-0.4
2,281,151	+				-1.0
2,281,152	-				-0.5
2,281,152	-				+1.2
2,281,171	-				-0.4
2,281,248	-				-0.2
2,281,248	-				-1.1
2,281,248	-				+1.8
2,281,492	-		Sama_1871	0.11	+0.2
2,281,523	-		Sama_1871	0.12	+0.5
2,281,523	-		Sama_1871	0.12	+1.5
2,281,568	-		Sama_1871	0.15	+1.1
2,281,568	-		Sama_1871	0.15	+0.8
2,281,590	+		Sama_1871	0.16	-0.9
2,281,591	-		Sama_1871	0.16	-0.7
2,281,664	-		Sama_1871	0.19	+1.4
2,281,740	-		Sama_1871	0.23	+0.5
2,281,790	-		Sama_1871	0.26	-0.4
2,281,824	+		Sama_1871	0.27	-0.9
2,281,824	+		Sama_1871	0.27	+0.2
2,281,856	+		Sama_1871	0.29	+0.0
2,281,856	+		Sama_1871	0.29	-0.3
2,281,875	-		Sama_1871	0.30	-1.5
2,281,875	-		Sama_1871	0.30	+1.1
2,281,912	-		Sama_1871	0.32	-0.6
2,281,912	-		Sama_1871	0.32	+1.1
2,281,912	-		Sama_1871	0.32	+0.8
2,281,912	-		Sama_1871	0.32	-2.4
2,281,948	-		Sama_1871	0.34	+1.4
2,281,948	-		Sama_1871	0.34	+0.0
2,281,994	-		Sama_1871	0.36	-1.7
2,282,107	+		Sama_1871	0.41	-0.2
2,282,147	-		Sama_1871	0.43	-0.9
2,282,164	+		Sama_1871	0.44	-1.3
2,282,283	-		Sama_1871	0.50	+0.5
2,282,283	-		Sama_1871	0.50	-0.7
2,282,477	-		Sama_1871	0.60	-1.3
2,282,502	-		Sama_1871	0.61	-0.4
2,282,528	-		Sama_1871	0.63	+0.2
2,282,540	+		Sama_1871	0.63	+0.0
2,282,629	-		Sama_1871	0.68	+0.0
2,282,670	+		Sama_1871	0.70	-0.3
2,282,671	-		Sama_1871	0.70	-0.8
2,282,671	-		Sama_1871	0.70	+0.5
2,282,671	-		Sama_1871	0.70	-1.3
2,282,671	-		Sama_1871	0.70	+0.8
2,282,764	-		Sama_1871	0.74	+1.0
2,282,764	-		Sama_1871	0.74	+0.0
2,282,771	+		Sama_1871	0.75	-1.1
2,282,811	-		Sama_1871	0.77	+0.5
2,282,856	-		Sama_1871	0.79	-1.3
2,282,856	-		Sama_1871	0.79	+0.9
2,282,856	-		Sama_1871	0.79	+0.8
2,282,856	-		Sama_1871	0.79	+0.5
2,282,856	-		Sama_1871	0.79	+0.2
2,282,856	-		Sama_1871	0.79	-0.5
2,282,864	+		Sama_1871	0.79	-1.9
2,282,864	+		Sama_1871	0.79	+0.8
2,282,864	+		Sama_1871	0.79	+0.1
2,282,864	+		Sama_1871	0.79	+1.2
2,282,864	+		Sama_1871	0.79	-0.6
2,282,877	-		Sama_1871	0.80	+0.8
2,282,989	+		Sama_1871	0.86	+4.1
2,282,989	+		Sama_1871	0.86	+0.2
2,282,990	-		Sama_1871	0.86	+0.7
2,282,993	+		Sama_1871	0.86	-0.4
2,282,993	+		Sama_1871	0.86	+0.0
2,283,012	-		Sama_1871	0.87	+0.8
2,283,024	+		Sama_1871	0.87	-0.0
2,283,025	-		Sama_1871	0.87	+1.8
2,283,025	-		Sama_1871	0.87	+1.8
2,283,068	+		Sama_1871	0.90	+1.2
2,283,069	-		Sama_1871	0.90	-1.4
2,283,069	-		Sama_1871	0.90	-0.5
2,283,069	-		Sama_1871	0.90	-0.1
2,283,245	-				-0.2
2,283,266	-				+1.4
2,283,279	+				+1.5
2,283,279	+				-0.2
2,283,279	+				+0.2
2,283,279	+				+0.2
2,283,280	-				+2.0
2,283,280	-				-1.0
2,283,280	-				+0.2
2,283,280	-				-0.6
2,283,280	-				+1.4
2,283,280	-				-0.2
2,283,280	-				+1.2
2,283,283	-				-0.2
2,283,283	-				-0.4
2,283,310	+				+1.8
2,283,311	-				+0.4
2,283,322	-				+0.0
2,283,322	-				-0.9
2,283,322	-				+0.0
2,283,322	-				+0.2
2,283,348	+				+0.0
2,283,349	-				-0.2
2,283,352	+				-0.2
2,283,353	-				-0.6
2,283,353	-				-0.2
2,283,405	-				+1.7
2,283,417	+				+0.0
2,283,458	-				-0.8
2,283,488	+				-1.9
2,283,489	-				+0.0
2,283,493	-				+1.5
2,283,524	-				+1.2
2,283,524	-				-1.2
2,283,524	-				-0.8
2,283,524	-				+0.9
2,283,527	+				+1.8
2,283,546	+				-0.6
2,283,547	-				+1.1
2,283,584	+				-0.5
2,283,585	-				-0.2
2,283,589	-				-0.4
2,283,589	-				-0.2
2,283,599	+				+0.6
2,283,599	+				+2.2
2,283,600	-				+0.5
2,283,600	-				-1.4
2,283,600	-				+0.0
2,283,662	-				-1.0
2,283,763	-				+0.1
2,283,775	-				-1.1
2,283,775	-				-1.4
2,283,817	+				+0.8
2,283,817	+				-0.5
2,283,818	-				+1.8
2,283,818	-				+0.9
2,283,818	-				+0.5
2,283,818	-				-1.4
2,283,818	-				+2.1
2,283,850	-				-2.1
2,283,879	-				+0.5
2,283,879	-				+0.2
2,283,879	-				+2.8
2,283,889	+				-1.4
2,283,890	-				-0.5
2,283,977	-		Sama_1872	0.11	-0.5
2,283,996	+		Sama_1872	0.12	+2.0
2,283,996	+		Sama_1872	0.12	+2.1
2,283,999	+		Sama_1872	0.12	+0.5
2,284,024	+		Sama_1872	0.12	+0.2
2,284,088	+		Sama_1872	0.14	+0.4
2,284,122	+		Sama_1872	0.16	-0.5
2,284,123	-		Sama_1872	0.16	+1.7
2,284,123	-		Sama_1872	0.16	+0.8
2,284,123	-		Sama_1872	0.16	+2.1
2,284,159	+		Sama_1872	0.17	-1.4
2,284,160	-		Sama_1872	0.17	+0.1
2,284,166	-		Sama_1872	0.17	-0.4
2,284,262	+		Sama_1872	0.20	-0.9
2,284,262	+		Sama_1872	0.20	+0.5
2,284,262	+		Sama_1872	0.20	-1.2
2,284,262	+		Sama_1872	0.20	-0.2