Strain Fitness in Shewanella amazonensis SB2B around Sama_1629

Experiment: Cisplatin 0.025 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.025 mg/ml
1,993,332	+	argD	Sama_1628	0.31	-0.5
1,993,333	-	argD	Sama_1628	0.31	-0.2
1,993,352	+	argD	Sama_1628	0.33	+1.8
1,993,436	+	argD	Sama_1628	0.40	+0.2
1,993,437	-	argD	Sama_1628	0.40	+0.3
1,993,437	-	argD	Sama_1628	0.40	+0.8
1,993,437	-	argD	Sama_1628	0.40	-0.5
1,993,437	-	argD	Sama_1628	0.40	+1.2
1,993,464	+	argD	Sama_1628	0.42	+1.4
1,993,464	+	argD	Sama_1628	0.42	+0.2
1,993,465	-	argD	Sama_1628	0.42	-2.2
1,993,465	-	argD	Sama_1628	0.42	-2.4
1,993,465	-	argD	Sama_1628	0.42	+1.8
1,993,465	-	argD	Sama_1628	0.42	-1.8
1,993,465	-	argD	Sama_1628	0.42	-0.9
1,993,470	+	argD	Sama_1628	0.42	-0.8
1,993,471	-	argD	Sama_1628	0.43	-0.5
1,993,471	-	argD	Sama_1628	0.43	-1.6
1,993,471	-	argD	Sama_1628	0.43	-1.4
1,993,471	-	argD	Sama_1628	0.43	+0.1
1,993,502	+	argD	Sama_1628	0.45	-0.7
1,993,551	-	argD	Sama_1628	0.49	-0.5
1,993,627	+	argD	Sama_1628	0.55	+1.2
1,993,628	-	argD	Sama_1628	0.55	-1.7
1,993,669	-	argD	Sama_1628	0.59	+1.8
1,993,744	+	argD	Sama_1628	0.65	-0.4
1,993,795	+	argD	Sama_1628	0.69	-0.7
1,993,795	+	argD	Sama_1628	0.69	+1.8
1,993,796	-	argD	Sama_1628	0.69	+1.6
1,993,796	-	argD	Sama_1628	0.69	-0.9
1,994,124	+				-0.8
1,994,164	+				+1.8
1,994,165	-				+2.2
1,994,165	-				-0.2
1,994,228	-				-1.4
1,994,228	-				+0.5
1,994,238	+				-0.8
1,994,239	-				+0.8
1,994,239	-				+0.5
1,994,241	-				+0.2
1,994,499	-		Sama_1629	0.41	-0.7
1,994,499	-		Sama_1629	0.41	-0.4
1,994,499	-		Sama_1629	0.41	+0.5
1,994,603	+		Sama_1629	0.65	-1.4
1,994,603	+		Sama_1629	0.65	-0.4
1,994,604	-		Sama_1629	0.65	+1.8
1,994,604	-		Sama_1629	0.65	-3.2
1,994,604	-		Sama_1629	0.65	+0.8
1,994,604	-		Sama_1629	0.65	+0.1
1,994,622	-		Sama_1629	0.69	-0.5
1,994,683	+		Sama_1629	0.84	+0.5
1,994,704	-		Sama_1629	0.89	-0.4
1,994,762	+				+0.9
1,994,762	+				-0.5
1,994,762	+				+0.5
1,994,762	+				-0.9
1,994,763	-				-0.2
1,994,763	-				-0.5
1,994,763	-				-0.4
1,994,763	-				+0.8
1,994,763	-				+1.5
1,994,763	-				+0.5
1,994,763	-				+0.0
1,994,920	+		Sama_1630	0.10	-1.2
1,994,921	-		Sama_1630	0.10	+0.0
1,995,002	+		Sama_1630	0.19	-2.4
1,995,067	+		Sama_1630	0.27	+0.2
1,995,106	+		Sama_1630	0.31	+0.5
1,995,120	+		Sama_1630	0.33	-0.5
1,995,121	-		Sama_1630	0.33	+1.6
1,995,121	-		Sama_1630	0.33	+1.8
1,995,121	-		Sama_1630	0.33	+1.6
1,995,193	+		Sama_1630	0.41	+0.2
1,995,199	+		Sama_1630	0.42	+0.5
1,995,199	+		Sama_1630	0.42	+0.2
1,995,199	+		Sama_1630	0.42	-0.9
1,995,199	+		Sama_1630	0.42	+0.1
1,995,200	-		Sama_1630	0.42	+0.0
1,995,200	-		Sama_1630	0.42	+0.2
1,995,212	+		Sama_1630	0.43	+0.7
1,995,301	-		Sama_1630	0.53	-0.5
1,995,326	+		Sama_1630	0.56	+0.6
1,995,351	-		Sama_1630	0.59	+0.9
1,995,351	-		Sama_1630	0.59	+1.2
1,995,400	-		Sama_1630	0.64	-0.4
1,995,400	-		Sama_1630	0.64	+1.3
1,995,460	-		Sama_1630	0.71	-0.1
1,995,511	+		Sama_1630	0.77	+0.3
1,995,511	+		Sama_1630	0.77	-1.4
1,995,511	+		Sama_1630	0.77	-0.2
1,995,512	-		Sama_1630	0.77	+0.8
1,995,512	-		Sama_1630	0.77	+1.3
1,995,512	-		Sama_1630	0.77	-1.6
1,995,569	+		Sama_1630	0.83	-1.0
1,995,627	-		Sama_1630	0.90	-0.4
1,995,681	+				+0.8
1,995,681	+				+1.0
1,995,682	-				-0.8
1,995,682	-				-0.2
1,995,682	-				+0.5
1,995,682	-				+0.6
1,995,682	-				-1.8
1,995,721	+				+1.1
1,995,721	+				+0.8
1,995,721	+				-0.2
1,995,721	+				-0.8
1,995,722	-				+1.8
1,995,722	-				-0.5
1,995,722	-				-0.9
1,995,722	-				+2.8
1,995,745	-				-1.5