Strain Fitness in Shewanella amazonensis SB2B around Sama_1549

Experiment: Cisplatin 0.025 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.025 mg/ml
1,884,857	+		Sama_1548	0.35	+0.2
1,884,857	+		Sama_1548	0.35	+2.2
1,884,857	+		Sama_1548	0.35	-0.9
1,884,857	+		Sama_1548	0.35	+1.9
1,884,858	-		Sama_1548	0.35	+0.4
1,884,858	-		Sama_1548	0.35	-0.2
1,884,858	-		Sama_1548	0.35	+0.4
1,884,858	-		Sama_1548	0.35	-0.1
1,884,912	+		Sama_1548	0.38	+1.1
1,884,912	+		Sama_1548	0.38	-2.2
1,884,913	-		Sama_1548	0.38	-0.4
1,884,913	-		Sama_1548	0.38	-1.9
1,884,913	-		Sama_1548	0.38	-0.8
1,884,998	-		Sama_1548	0.44	-0.6
1,885,132	-		Sama_1548	0.53	+0.4
1,885,257	+		Sama_1548	0.61	-1.7
1,885,364	+		Sama_1548	0.68	-0.1
1,885,365	-		Sama_1548	0.68	-0.4
1,885,521	+		Sama_1548	0.78	-0.2
1,885,543	-		Sama_1548	0.80	-1.2
1,885,563	+		Sama_1548	0.81	-0.2
1,885,564	-		Sama_1548	0.81	+0.0
1,885,571	+		Sama_1548	0.81	-1.2
1,885,571	+		Sama_1548	0.81	+0.2
1,885,571	+		Sama_1548	0.81	+0.1
1,885,572	-		Sama_1548	0.82	+1.4
1,885,593	+		Sama_1548	0.83	-0.1
1,885,593	+		Sama_1548	0.83	+0.3
1,885,594	-		Sama_1548	0.83	-0.2
1,885,615	-		Sama_1548	0.84	+0.4
1,885,615	-		Sama_1548	0.84	+0.6
1,885,649	+		Sama_1548	0.87	+0.3
1,885,649	+		Sama_1548	0.87	+0.2
1,885,744	+				+0.4
1,885,744	+				-0.8
1,885,744	+				-0.2
1,885,744	+				-1.6
1,885,745	-				+1.7
1,885,745	-				-0.6
1,885,745	-				-1.1
1,885,866	-				+1.2
1,885,876	+				-1.9
1,885,877	-				-0.7
1,885,913	+				-0.4
1,885,914	-				-0.9
1,885,972	+				+0.4
1,885,973	-				+1.2
1,886,052	+		Sama_1549	0.15	-0.7
1,886,053	-		Sama_1549	0.15	-0.7
1,886,053	-		Sama_1549	0.15	+0.8
1,886,053	-		Sama_1549	0.15	+1.2
1,886,058	-		Sama_1549	0.15	-2.5
1,886,084	+		Sama_1549	0.17	-0.4
1,886,100	+		Sama_1549	0.18	+0.8
1,886,152	-		Sama_1549	0.22	+1.6
1,886,300	+		Sama_1549	0.33	+0.8
1,886,300	+		Sama_1549	0.33	-0.7
1,886,300	+		Sama_1549	0.33	-1.6
1,886,300	+		Sama_1549	0.33	+1.0
1,886,300	+		Sama_1549	0.33	+0.2
1,886,301	-		Sama_1549	0.33	-1.0
1,886,321	+		Sama_1549	0.35	+0.1
1,886,321	+		Sama_1549	0.35	+0.8
1,886,323	+		Sama_1549	0.35	-0.5
1,886,324	-		Sama_1549	0.35	-0.1
1,886,444	+		Sama_1549	0.44	+1.3
1,886,447	+		Sama_1549	0.44	-0.4
1,886,447	+		Sama_1549	0.44	-0.2
1,886,448	-		Sama_1549	0.44	+1.0
1,886,448	-		Sama_1549	0.44	-0.0
1,886,570	-		Sama_1549	0.54	-0.7
1,886,575	+		Sama_1549	0.54	+0.4
1,886,576	-		Sama_1549	0.54	-0.0
1,886,639	+		Sama_1549	0.59	-1.7
1,886,640	-		Sama_1549	0.59	+1.3
1,886,752	+		Sama_1549	0.67	+2.0
1,886,815	+		Sama_1549	0.72	-0.6
1,886,816	-		Sama_1549	0.72	+1.2
1,886,816	-		Sama_1549	0.72	+0.9
1,886,816	-		Sama_1549	0.72	-0.8
1,886,859	+		Sama_1549	0.75	-0.8
1,886,906	-		Sama_1549	0.79	-0.8
1,886,951	+		Sama_1549	0.82	-0.6
1,886,990	-		Sama_1549	0.85	-0.4
1,886,990	-		Sama_1549	0.85	-1.3
1,886,990	-		Sama_1549	0.85	+0.8
1,886,998	+		Sama_1549	0.86	-1.1
1,886,998	+		Sama_1549	0.86	-1.1
1,887,144	+				-1.4
1,887,144	+				+1.8
1,887,144	+				+4.8
1,887,144	+				-1.3
1,887,144	+				-0.4
1,887,144	+				-0.2
1,887,144	+				-0.1
1,887,145	-				-0.4
1,887,145	-				+0.4
1,887,145	-				-1.2
1,887,146	+				-0.2
1,887,146	+				+2.0
1,887,147	-				-1.2
1,887,186	+				-0.7
1,887,186	+				+0.2
1,887,186	+				-0.1
1,887,187	-				-0.1
1,887,216	+				+1.8
1,887,221	+				+0.4
1,887,246	-				-0.8
1,887,246	-				+2.2
1,887,264	+				-0.7
1,887,265	-				+0.6
1,887,315	+				-0.6
1,887,333	+				+0.8
1,887,386	-		Sama_1550	0.12	+1.3
1,887,634	+		Sama_1550	0.48	-0.1
1,887,635	-		Sama_1550	0.48	-0.9
1,887,635	-		Sama_1550	0.48	-0.1
1,887,690	-		Sama_1550	0.56	-1.3
1,887,730	+		Sama_1550	0.62	+0.4
1,887,730	+		Sama_1550	0.62	+0.0
1,887,732	+		Sama_1550	0.62	+1.3
1,887,732	+		Sama_1550	0.62	+0.4
1,887,732	+		Sama_1550	0.62	-3.2
1,887,733	-		Sama_1550	0.63	-1.2
1,887,733	-		Sama_1550	0.63	+0.9
1,887,733	-		Sama_1550	0.63	-0.2
1,887,733	-		Sama_1550	0.63	+3.0
1,887,733	-		Sama_1550	0.63	+0.2
1,887,733	-		Sama_1550	0.63	-0.4
1,887,733	-		Sama_1550	0.63	-1.2
1,887,741	+		Sama_1550	0.64	-0.8
1,887,827	-		Sama_1550	0.76	-0.4
1,887,896	+		Sama_1550	0.86	+1.2
1,887,907	+		Sama_1550	0.88	+1.4
1,887,908	-		Sama_1550	0.88	-0.2
1,887,946	+				-1.5
1,887,947	-				-0.7
1,888,004	-				+1.2
1,888,057	+				+0.4
1,888,058	-				-1.6
1,888,066	+				-0.9
1,888,111	+		Sama_1551	0.14	+0.8
1,888,111	+		Sama_1551	0.14	-1.3
1,888,112	-		Sama_1551	0.14	+0.9
1,888,112	-		Sama_1551	0.14	+0.8
1,888,154	+		Sama_1551	0.20	-0.4
1,888,154	+		Sama_1551	0.20	-2.0
1,888,155	-		Sama_1551	0.20	-0.9
1,888,160	+		Sama_1551	0.20	+1.0
1,888,161	-		Sama_1551	0.20	-0.8