Strain Fitness in Shewanella amazonensis SB2B around Sama_1486

Experiment: Cisplatin 0.025 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.025 mg/ml
1,798,229	+		Sama_1484	0.80	-1.4
1,798,230	-		Sama_1484	0.80	-0.8
1,798,524	+				-1.1
1,798,532	+				+0.4
1,798,533	-				+2.7
1,798,533	-				-1.1
1,798,534	+				+1.9
1,798,534	+				-0.1
1,798,535	-				+0.1
1,798,580	-				+0.4
1,798,606	+				+0.9
1,798,606	+				+0.8
1,798,606	+				+0.8
1,798,617	-				-0.5
1,798,646	+		Sama_1485	0.13	-0.8
1,798,646	+		Sama_1485	0.13	+0.3
1,798,646	+		Sama_1485	0.13	+2.3
1,798,646	+		Sama_1485	0.13	-0.1
1,798,646	+		Sama_1485	0.13	+2.2
1,798,646	+		Sama_1485	0.13	-0.7
1,798,646	+		Sama_1485	0.13	+0.7
1,798,647	-		Sama_1485	0.13	+0.6
1,798,647	-		Sama_1485	0.13	-1.5
1,798,647	-		Sama_1485	0.13	+0.7
1,798,647	-		Sama_1485	0.13	+0.7
1,798,647	-		Sama_1485	0.13	-0.9
1,798,647	-		Sama_1485	0.13	+0.3
1,798,647	-		Sama_1485	0.13	-1.2
1,798,647	-		Sama_1485	0.13	-0.7
1,798,647	-		Sama_1485	0.13	+0.8
1,798,647	-		Sama_1485	0.13	-0.8
1,798,647	-		Sama_1485	0.13	-0.1
1,798,647	-		Sama_1485	0.13	+1.3
1,798,647	-		Sama_1485	0.13	-2.0
1,798,647	-		Sama_1485	0.13	+0.1
1,798,647	-		Sama_1485	0.13	-0.9
1,798,647	-		Sama_1485	0.13	+0.1
1,798,647	-		Sama_1485	0.13	-1.1
1,798,648	+		Sama_1485	0.14	+0.7
1,798,648	+		Sama_1485	0.14	-0.1
1,798,649	-		Sama_1485	0.14	-1.4
1,798,649	-		Sama_1485	0.14	+0.5
1,798,649	-		Sama_1485	0.14	+0.9
1,798,649	-		Sama_1485	0.14	-0.6
1,798,678	+		Sama_1485	0.19	-0.7
1,798,740	+		Sama_1485	0.29	-0.1
1,798,765	-		Sama_1485	0.34	-0.7
1,798,776	+		Sama_1485	0.35	-1.1
1,798,777	-		Sama_1485	0.36	+0.6
1,798,777	-		Sama_1485	0.36	-1.7
1,798,777	-		Sama_1485	0.36	-0.1
1,798,787	+		Sama_1485	0.37	+0.7
1,798,787	+		Sama_1485	0.37	+0.1
1,798,809	-		Sama_1485	0.41	-2.8
1,798,827	-		Sama_1485	0.44	-0.5
1,798,999	+		Sama_1485	0.73	+0.0
1,799,067	+		Sama_1485	0.85	-1.0
1,799,067	+		Sama_1485	0.85	+3.3
1,799,068	-		Sama_1485	0.85	-1.7
1,799,096	+		Sama_1485	0.90	-1.4
1,799,096	+		Sama_1485	0.90	+0.0
1,799,096	+		Sama_1485	0.90	+0.1
1,799,096	+		Sama_1485	0.90	-0.9
1,799,099	+				-1.2
1,799,100	-				-1.6
1,799,101	+				+1.9
1,799,101	+				+1.7
1,799,101	+				+0.3
1,799,101	+				-0.7
1,799,102	-				-0.0
1,799,102	-				+1.7
1,799,183	+				-0.1
1,799,183	+				-0.7
1,799,183	+				+1.2
1,799,183	+				+0.3
1,799,184	-				+3.7
1,799,184	-				-2.0
1,799,184	-				-1.2
1,799,184	-				+0.3
1,799,491	+		Sama_1486	0.41	+0.8
1,799,491	+		Sama_1486	0.41	-0.3
1,799,491	+		Sama_1486	0.41	+1.1
1,799,491	+		Sama_1486	0.41	+0.1
1,799,491	+		Sama_1486	0.41	-2.2
1,799,660	+		Sama_1486	0.63	-0.1
1,799,660	+		Sama_1486	0.63	-1.1
1,799,660	+		Sama_1486	0.63	-1.8
1,799,660	+		Sama_1486	0.63	-1.4
1,799,661	-		Sama_1486	0.64	+1.7
1,800,015	+				-1.6
1,800,026	-				-2.0
1,800,150	+				+1.1
1,800,187	-		Sama_1487	0.11	-1.9
1,800,187	-		Sama_1487	0.11	+0.1
1,800,187	-		Sama_1487	0.11	+1.4
1,800,254	+		Sama_1487	0.13	-0.1
1,800,460	-		Sama_1487	0.22	+0.9
1,800,494	-		Sama_1487	0.23	+2.3
1,800,521	+		Sama_1487	0.24	-1.1
1,800,521	+		Sama_1487	0.24	-0.3
1,800,521	+		Sama_1487	0.24	+1.9
1,800,521	+		Sama_1487	0.24	-0.8
1,800,522	-		Sama_1487	0.24	-0.3
1,800,527	+		Sama_1487	0.24	-0.7
1,800,528	-		Sama_1487	0.24	+0.6
1,800,615	+		Sama_1487	0.28	-1.2
1,800,616	-		Sama_1487	0.28	+2.5
1,800,616	-		Sama_1487	0.28	+0.6
1,800,672	+		Sama_1487	0.30	-0.1
1,800,672	+		Sama_1487	0.30	+0.7
1,800,693	+		Sama_1487	0.31	+0.2
1,800,693	+		Sama_1487	0.31	+0.7
1,800,693	+		Sama_1487	0.31	-0.2
1,800,714	+		Sama_1487	0.32	-0.7
1,800,714	+		Sama_1487	0.32	-0.8
1,800,714	+		Sama_1487	0.32	-2.4
1,800,715	-		Sama_1487	0.32	+0.6
1,800,749	+		Sama_1487	0.33	-0.3
1,800,750	-		Sama_1487	0.33	+1.9
1,800,846	+		Sama_1487	0.37	+1.9
1,800,846	+		Sama_1487	0.37	-1.7
1,800,888	+		Sama_1487	0.39	+1.4