Strain Fitness in Shewanella amazonensis SB2B around Sama_1119

Experiment: Cisplatin 0.025 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.025 mg/ml
1,369,824	+		Sama_1118	0.68	+0.3
1,369,841	+		Sama_1118	0.69	-0.5
1,369,841	+		Sama_1118	0.69	-0.4
1,369,842	-		Sama_1118	0.69	+1.2
1,369,963	+		Sama_1118	0.75	-0.8
1,369,963	+		Sama_1118	0.75	+0.8
1,369,963	+		Sama_1118	0.75	-0.7
1,369,963	+		Sama_1118	0.75	-0.9
1,369,963	+		Sama_1118	0.75	-0.4
1,369,964	-		Sama_1118	0.75	+1.3
1,369,991	+		Sama_1118	0.77	-0.3
1,369,992	-		Sama_1118	0.77	+0.0
1,370,088	-		Sama_1118	0.81	-1.9
1,370,148	+		Sama_1118	0.84	-0.6
1,370,148	+		Sama_1118	0.84	-2.9
1,370,148	+		Sama_1118	0.84	+2.8
1,370,148	+		Sama_1118	0.84	+0.4
1,370,149	-		Sama_1118	0.84	+1.4
1,370,149	-		Sama_1118	0.84	+0.6
1,370,149	-		Sama_1118	0.84	+0.2
1,370,149	-		Sama_1118	0.84	+0.5
1,370,234	+		Sama_1118	0.88	-1.5
1,370,234	+		Sama_1118	0.88	+0.2
1,370,235	-		Sama_1118	0.88	-1.3
1,370,235	-		Sama_1118	0.88	+0.9
1,370,235	-		Sama_1118	0.88	-0.1
1,370,236	+		Sama_1118	0.88	-1.0
1,370,302	+				-3.0
1,370,303	-				+0.3
1,370,308	+				+1.0
1,370,309	-				-1.1
1,370,357	+				-0.1
1,370,357	+				+1.0
1,370,392	+				-0.0
1,370,447	+				+0.1
1,370,452	+				+0.4
1,370,452	+				+0.2
1,370,453	-				-1.2
1,370,453	-				-1.4
1,370,453	-				+1.0
1,370,469	+				-1.7
1,370,469	+				-1.6
1,370,470	-				+0.2
1,370,496	-				+1.4
1,370,556	-				-0.1
1,370,573	-				-1.3
1,370,632	+				+0.7
1,370,644	+				+1.0
1,370,645	-				+1.8
1,370,684	+				-1.6
1,370,684	+				+0.9
1,370,684	+				+0.4
1,370,685	-				+0.6
1,370,685	-				-0.1
1,370,685	-				+0.2
1,370,685	-				+1.1
1,370,701	+				-1.4
1,370,727	+				-0.1
1,370,762	-				+1.0
1,370,921	+		Sama_1119	0.22	+0.2
1,370,922	-		Sama_1119	0.22	-0.7
1,371,057	-		Sama_1119	0.38	-1.7
1,371,086	+		Sama_1119	0.41	-0.7
1,371,112	-		Sama_1119	0.44	+1.9
1,371,113	+		Sama_1119	0.44	-1.4
1,371,113	+		Sama_1119	0.44	-1.6
1,371,113	+		Sama_1119	0.44	+0.3
1,371,127	-		Sama_1119	0.46	+0.6
1,371,142	+		Sama_1119	0.48	-1.1
1,371,142	+		Sama_1119	0.48	+0.6
1,371,142	+		Sama_1119	0.48	-2.2
1,371,150	-		Sama_1119	0.49	-1.5
1,371,189	+		Sama_1119	0.53	-2.8
1,371,213	+		Sama_1119	0.56	+1.4
1,371,213	+		Sama_1119	0.56	-0.4
1,371,214	-		Sama_1119	0.56	+2.2
1,371,282	+		Sama_1119	0.64	+0.0
1,371,282	+		Sama_1119	0.64	-0.1
1,371,282	+		Sama_1119	0.64	-1.9
1,371,282	+		Sama_1119	0.64	-1.3
1,371,282	+		Sama_1119	0.64	-0.6
1,371,283	-		Sama_1119	0.64	-1.3
1,371,283	-		Sama_1119	0.64	+1.6
1,371,283	-		Sama_1119	0.64	-0.1
1,371,283	-		Sama_1119	0.64	-1.0
1,371,284	+		Sama_1119	0.64	-1.7
1,371,285	-		Sama_1119	0.65	+0.4
1,371,374	+		Sama_1119	0.75	+0.6
1,371,374	+		Sama_1119	0.75	-0.4
1,371,385	-		Sama_1119	0.76	-0.1
1,371,455	+		Sama_1119	0.84	-0.8
1,371,457	+		Sama_1119	0.85	+0.2
1,371,457	+		Sama_1119	0.85	+0.6
1,371,457	+		Sama_1119	0.85	-0.4
1,371,458	-		Sama_1119	0.85	+0.2
1,371,648	+				+1.2
1,371,649	-				+0.6
1,371,670	+				+0.2
1,371,671	-				+0.7
1,371,671	-				+2.0
1,371,671	-				+0.1
1,371,671	-				-1.2
1,371,671	-				-0.4
1,371,671	-				-1.8
1,371,683	-				-2.3
1,371,690	-				-0.8
1,371,698	+				+3.8
1,371,699	-				+0.1
1,371,782	+				-0.8
1,371,782	+				-1.3
1,371,782	+				-2.5
1,371,818	+	queF	Sama_1120	0.14	+1.2
1,371,818	+	queF	Sama_1120	0.14	-0.5
1,371,818	+	queF	Sama_1120	0.14	-0.1
1,371,819	-	queF	Sama_1120	0.14	-0.1
1,371,819	-	queF	Sama_1120	0.14	+1.7
1,371,819	-	queF	Sama_1120	0.14	+0.1
1,371,835	-	queF	Sama_1120	0.15	+1.4
1,371,840	+	queF	Sama_1120	0.16	-0.1
1,371,840	+	queF	Sama_1120	0.16	-1.1
1,371,841	-	queF	Sama_1120	0.16	-0.8
1,371,870	+	queF	Sama_1120	0.19	-2.1
1,371,870	+	queF	Sama_1120	0.19	+1.2
1,371,972	+	queF	Sama_1120	0.31	+0.0
1,372,067	+	queF	Sama_1120	0.42	-0.8
1,372,068	-	queF	Sama_1120	0.42	-2.3
1,372,068	-	queF	Sama_1120	0.42	-1.6
1,372,071	+	queF	Sama_1120	0.42	+0.2
1,372,117	+	queF	Sama_1120	0.47	-0.1
1,372,117	+	queF	Sama_1120	0.47	-0.4
1,372,117	+	queF	Sama_1120	0.47	-0.0
1,372,120	+	queF	Sama_1120	0.47	-2.8
1,372,120	+	queF	Sama_1120	0.47	-1.1
1,372,120	+	queF	Sama_1120	0.47	-1.1
1,372,121	-	queF	Sama_1120	0.48	-2.7
1,372,121	-	queF	Sama_1120	0.48	-1.8
1,372,121	-	queF	Sama_1120	0.48	-0.1
1,372,123	-	queF	Sama_1120	0.48	-0.8
1,372,140	-	queF	Sama_1120	0.50	+0.2
1,372,140	-	queF	Sama_1120	0.50	-1.6
1,372,159	-	queF	Sama_1120	0.52	-1.1
1,372,159	-	queF	Sama_1120	0.52	-1.5
1,372,259	+	queF	Sama_1120	0.63	-0.6
1,372,260	-	queF	Sama_1120	0.63	+0.5
1,372,266	+	queF	Sama_1120	0.64	+0.4
1,372,267	-	queF	Sama_1120	0.64	+0.6
1,372,300	+	queF	Sama_1120	0.68	+0.6
1,372,300	+	queF	Sama_1120	0.68	+0.9
1,372,300	+	queF	Sama_1120	0.68	+1.3
1,372,300	+	queF	Sama_1120	0.68	+0.5
1,372,300	+	queF	Sama_1120	0.68	-1.4
1,372,301	-	queF	Sama_1120	0.68	+0.7
1,372,367	+	queF	Sama_1120	0.75	-1.3
1,372,481	+	queF	Sama_1120	0.88	+0.6
1,372,482	-	queF	Sama_1120	0.88	-0.1
1,372,530	+				+0.2
1,372,530	+				+0.8
1,372,532	+				-1.3
1,372,532	+				-0.9
1,372,533	-				-1.4
1,372,533	-				-0.8
1,372,533	-				-0.6
1,372,533	-				-1.7
1,372,533	-				-0.1
1,372,533	-				-0.0