Strain Fitness in Shewanella amazonensis SB2B around Sama_1085

Experiment: Cisplatin 0.025 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.025 mg/ml
1,312,174	-		Sama_1084	0.56	-1.8
1,312,237	+		Sama_1084	0.59	-1.1
1,312,237	+		Sama_1084	0.59	-2.1
1,312,238	-		Sama_1084	0.60	+0.2
1,312,252	-		Sama_1084	0.60	+0.0
1,312,298	-		Sama_1084	0.63	+1.2
1,312,300	+		Sama_1084	0.63	+0.3
1,312,307	+		Sama_1084	0.64	+2.3
1,312,380	+		Sama_1084	0.68	+0.2
1,312,380	+		Sama_1084	0.68	-1.1
1,312,380	+		Sama_1084	0.68	+0.0
1,312,380	+		Sama_1084	0.68	-1.1
1,312,402	+		Sama_1084	0.69	-0.6
1,312,402	+		Sama_1084	0.69	+1.8
1,312,403	-		Sama_1084	0.69	+0.0
1,312,409	+		Sama_1084	0.70	-1.3
1,312,409	+		Sama_1084	0.70	+0.5
1,312,409	+		Sama_1084	0.70	-1.0
1,312,410	-		Sama_1084	0.70	-1.1
1,312,410	-		Sama_1084	0.70	-1.9
1,312,410	-		Sama_1084	0.70	-0.3
1,312,474	+		Sama_1084	0.73	+1.0
1,312,474	+		Sama_1084	0.73	-2.2
1,312,475	-		Sama_1084	0.74	+1.4
1,312,478	+		Sama_1084	0.74	+0.9
1,312,478	+		Sama_1084	0.74	+0.8
1,312,478	+		Sama_1084	0.74	+0.2
1,312,479	-		Sama_1084	0.74	+1.4
1,312,479	-		Sama_1084	0.74	-1.4
1,312,494	-		Sama_1084	0.75	-2.6
1,312,570	+		Sama_1084	0.79	-1.0
1,312,570	+		Sama_1084	0.79	-1.7
1,312,639	+		Sama_1084	0.83	-1.1
1,312,639	+		Sama_1084	0.83	-0.6
1,312,639	+		Sama_1084	0.83	+0.0
1,312,639	+		Sama_1084	0.83	-0.7
1,312,639	+		Sama_1084	0.83	+0.7
1,312,639	+		Sama_1084	0.83	-2.4
1,312,719	+		Sama_1084	0.88	-0.4
1,312,719	+		Sama_1084	0.88	+0.9
1,312,720	-		Sama_1084	0.88	+1.6
1,312,749	+		Sama_1084	0.90	-0.1
1,312,861	+				-2.4
1,312,861	+				+0.4
1,312,861	+				-0.3
1,312,861	+				+0.5
1,312,861	+				-0.1
1,312,861	+				+0.5
1,312,861	+				-0.6
1,312,862	-				-1.3
1,312,862	-				-0.6
1,312,862	-				-1.0
1,312,862	-				-1.3
1,312,862	-				-0.2
1,312,862	-				-0.3
1,312,865	+				-0.1
1,312,865	+				+0.0
1,312,866	-				+0.0
1,312,968	-				+1.0
1,312,968	-				-0.7
1,312,997	+				+2.0
1,313,028	-				-0.9
1,313,038	+				+0.0
1,313,060	+				-0.9
1,313,060	+				-0.6
1,313,060	+				-1.4
1,313,061	-				-1.0
1,313,193	+		Sama_1085	0.14	-0.8
1,313,193	+		Sama_1085	0.14	+0.2
1,313,194	-		Sama_1085	0.14	-0.4
1,313,194	-		Sama_1085	0.14	+0.6
1,313,194	-		Sama_1085	0.14	-1.7
1,313,221	-		Sama_1085	0.31	-1.3
1,313,243	-		Sama_1085	0.44	-0.3
1,313,243	-		Sama_1085	0.44	-0.9
1,313,261	-		Sama_1085	0.56	-2.4
1,313,319	+				-2.0
1,313,319	+				-0.6
1,313,380	+				+0.4
1,313,402	-				+0.0
1,313,416	-				-0.6
1,313,460	-				-1.3
1,313,460	-				-0.4
1,313,460	-				+0.3
1,313,478	+				-1.7
1,313,479	-				-1.1
1,313,566	+				-0.3
1,313,566	+				+1.3
1,313,725	-		Sama_1086	0.14	-1.3
1,313,804	-		Sama_1086	0.20	-1.6
1,313,858	-		Sama_1086	0.24	-2.5
1,313,895	+		Sama_1086	0.26	-1.6
1,313,895	+		Sama_1086	0.26	-0.1
1,313,896	-		Sama_1086	0.26	-1.1
1,313,896	-		Sama_1086	0.26	-1.0
1,313,896	-		Sama_1086	0.26	-1.1
1,314,004	+		Sama_1086	0.34	-0.7
1,314,004	+		Sama_1086	0.34	-1.1
1,314,005	-		Sama_1086	0.34	-1.4
1,314,005	-		Sama_1086	0.34	-0.1
1,314,070	+		Sama_1086	0.39	-1.0
1,314,071	-		Sama_1086	0.39	-1.0
1,314,178	+		Sama_1086	0.47	+1.0
1,314,178	+		Sama_1086	0.47	+1.8
1,314,178	+		Sama_1086	0.47	+0.4
1,314,180	+		Sama_1086	0.47	+0.7
1,314,181	-		Sama_1086	0.47	+2.1
1,314,181	-		Sama_1086	0.47	-0.5
1,314,181	-		Sama_1086	0.47	-1.4
1,314,181	-		Sama_1086	0.47	+0.6
1,314,181	-		Sama_1086	0.47	+0.2
1,314,244	+		Sama_1086	0.52	-1.5
1,314,244	+		Sama_1086	0.52	+0.2
1,314,244	+		Sama_1086	0.52	-2.0
1,314,244	+		Sama_1086	0.52	-1.3
1,314,244	+		Sama_1086	0.52	+0.4
1,314,244	+		Sama_1086	0.52	-0.5
1,314,244	+		Sama_1086	0.52	+0.7
1,314,245	-		Sama_1086	0.52	+0.6
1,314,245	-		Sama_1086	0.52	+1.9
1,314,245	-		Sama_1086	0.52	-1.7