Experiment: Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0629 and rumB are separated by 34 nucleotides rumB and Sama_0631 overlap by 32 nucleotides
Sama_0629: Sama_0629 - glycerol-3-phosphate dehydrogenase (RefSeq), at 781,189 to 782,403
_0629
Sama_0630: rumB - 23S rRNA methyluridine methyltransferase (RefSeq), at 782,438 to 783,592
rumB
Sama_0631: Sama_0631 - signal transduction histidine kinase-like protein (RefSeq), at 783,561 to 784,757
_0631
Position (kb) 782
783
784 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 781.450 kb on + strand, within Sama_0629 at 781.450 kb on + strand, within Sama_0629 at 781.462 kb on + strand, within Sama_0629 at 781.463 kb on - strand, within Sama_0629 at 781.463 kb on - strand, within Sama_0629 at 781.463 kb on - strand, within Sama_0629 at 781.492 kb on - strand, within Sama_0629 at 781.513 kb on + strand, within Sama_0629 at 781.514 kb on - strand, within Sama_0629 at 781.523 kb on + strand, within Sama_0629 at 781.523 kb on + strand, within Sama_0629 at 781.524 kb on - strand, within Sama_0629 at 781.592 kb on + strand, within Sama_0629 at 781.592 kb on + strand, within Sama_0629 at 781.593 kb on - strand, within Sama_0629 at 781.624 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.727 kb on + strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.728 kb on - strand, within Sama_0629 at 781.761 kb on + strand, within Sama_0629 at 781.762 kb on - strand, within Sama_0629 at 781.762 kb on - strand, within Sama_0629 at 781.910 kb on + strand, within Sama_0629 at 781.910 kb on + strand, within Sama_0629 at 781.911 kb on - strand, within Sama_0629 at 781.911 kb on - strand, within Sama_0629 at 781.933 kb on + strand, within Sama_0629 at 781.934 kb on - strand, within Sama_0629 at 781.934 kb on - strand, within Sama_0629 at 781.934 kb on - strand, within Sama_0629 at 781.934 kb on - strand, within Sama_0629 at 781.971 kb on + strand, within Sama_0629 at 781.972 kb on - strand, within Sama_0629 at 781.972 kb on - strand, within Sama_0629 at 781.972 kb on - strand, within Sama_0629 at 781.972 kb on - strand, within Sama_0629 at 782.065 kb on + strand, within Sama_0629 at 782.065 kb on + strand, within Sama_0629 at 782.080 kb on + strand, within Sama_0629 at 782.081 kb on - strand, within Sama_0629 at 782.081 kb on - strand, within Sama_0629 at 782.081 kb on - strand, within Sama_0629 at 782.089 kb on + strand, within Sama_0629 at 782.090 kb on - strand, within Sama_0629 at 782.090 kb on - strand, within Sama_0629 at 782.090 kb on - strand, within Sama_0629 at 782.090 kb on - strand, within Sama_0629 at 782.090 kb on - strand, within Sama_0629 at 782.090 kb on - strand, within Sama_0629 at 782.139 kb on + strand, within Sama_0629 at 782.140 kb on - strand, within Sama_0629 at 782.140 kb on - strand, within Sama_0629 at 782.140 kb on - strand, within Sama_0629 at 782.249 kb on - strand, within Sama_0629 at 782.249 kb on - strand, within Sama_0629 at 782.323 kb on - strand at 782.346 kb on + strand at 782.385 kb on + strand at 782.402 kb on - strand at 782.420 kb on + strand at 782.450 kb on + strand at 782.451 kb on - strand at 782.705 kb on + strand, within rumB at 782.764 kb on + strand, within rumB at 782.765 kb on - strand, within rumB at 782.803 kb on + strand, within rumB at 782.803 kb on + strand, within rumB at 782.804 kb on - strand, within rumB at 782.804 kb on - strand, within rumB at 782.804 kb on - strand, within rumB at 782.804 kb on - strand, within rumB at 782.804 kb on - strand, within rumB at 782.804 kb on - strand, within rumB at 782.810 kb on - strand, within rumB at 782.810 kb on - strand, within rumB at 782.845 kb on + strand, within rumB at 782.845 kb on + strand, within rumB at 782.846 kb on - strand, within rumB at 782.846 kb on - strand, within rumB at 782.846 kb on - strand, within rumB at 782.932 kb on + strand, within rumB at 782.932 kb on + strand, within rumB at 782.932 kb on + strand, within rumB at 782.932 kb on + strand, within rumB at 782.933 kb on - strand, within rumB at 783.027 kb on + strand, within rumB at 783.027 kb on + strand, within rumB at 783.027 kb on + strand, within rumB at 783.099 kb on + strand, within rumB at 783.100 kb on - strand, within rumB at 783.102 kb on - strand, within rumB at 783.132 kb on + strand, within rumB at 783.132 kb on + strand, within rumB at 783.132 kb on + strand, within rumB at 783.133 kb on - strand, within rumB at 783.133 kb on - strand, within rumB at 783.133 kb on - strand, within rumB at 783.169 kb on - strand, within rumB at 783.280 kb on + strand, within rumB at 783.357 kb on + strand, within rumB at 783.357 kb on + strand, within rumB at 783.357 kb on + strand, within rumB at 783.357 kb on + strand, within rumB at 783.434 kb on + strand, within rumB at 783.435 kb on - strand, within rumB at 783.435 kb on - strand, within rumB at 783.435 kb on - strand, within rumB at 783.445 kb on + strand, within rumB at 783.446 kb on - strand, within rumB at 783.488 kb on + strand at 783.668 kb on + strand at 783.668 kb on + strand at 783.668 kb on + strand at 783.668 kb on + strand at 783.668 kb on + strand at 783.668 kb on + strand at 783.668 kb on + strand at 783.669 kb on - strand at 783.669 kb on - strand at 783.669 kb on - strand at 783.670 kb on + strand at 783.670 kb on + strand at 783.670 kb on + strand at 783.670 kb on + strand at 783.670 kb on + strand at 783.670 kb on + strand at 783.670 kb on + strand at 783.670 kb on + strand at 783.671 kb on - strand at 783.671 kb on - strand at 783.671 kb on - strand at 783.671 kb on - strand at 783.671 kb on - strand at 783.704 kb on + strand, within Sama_0631 at 783.705 kb on - strand, within Sama_0631 at 783.750 kb on + strand, within Sama_0631 at 783.815 kb on + strand, within Sama_0631 at 783.815 kb on + strand, within Sama_0631 at 783.815 kb on + strand, within Sama_0631 at 783.816 kb on - strand, within Sama_0631 at 783.816 kb on - strand, within Sama_0631 at 783.818 kb on + strand, within Sama_0631 at 783.819 kb on - strand, within Sama_0631 at 783.819 kb on - strand, within Sama_0631 at 783.819 kb on - strand, within Sama_0631 at 783.819 kb on - strand, within Sama_0631 at 783.819 kb on - strand, within Sama_0631 at 783.821 kb on + strand, within Sama_0631 at 783.850 kb on - strand, within Sama_0631 at 783.875 kb on + strand, within Sama_0631 at 783.875 kb on + strand, within Sama_0631 at 783.876 kb on - strand, within Sama_0631 at 783.940 kb on + strand, within Sama_0631 at 783.940 kb on + strand, within Sama_0631 at 783.941 kb on - strand, within Sama_0631 at 783.941 kb on - strand, within Sama_0631 at 783.952 kb on + strand, within Sama_0631 at 783.952 kb on + strand, within Sama_0631 at 783.952 kb on + strand, within Sama_0631 at 783.952 kb on + strand, within Sama_0631 at 783.952 kb on + strand, within Sama_0631 at 783.952 kb on + strand, within Sama_0631 at 783.952 kb on + strand, within Sama_0631 at 783.953 kb on - strand, within Sama_0631 at 783.953 kb on - strand, within Sama_0631 at 783.966 kb on - strand, within Sama_0631 at 783.966 kb on - strand, within Sama_0631 at 784.054 kb on + strand, within Sama_0631 at 784.054 kb on + strand, within Sama_0631 at 784.054 kb on + strand, within Sama_0631 at 784.054 kb on + strand, within Sama_0631 at 784.054 kb on + strand, within Sama_0631 at 784.054 kb on + strand, within Sama_0631 at 784.055 kb on - strand, within Sama_0631 at 784.055 kb on - strand, within Sama_0631 at 784.055 kb on - strand, within Sama_0631 at 784.162 kb on - strand, within Sama_0631 at 784.173 kb on + strand, within Sama_0631 at 784.174 kb on - strand, within Sama_0631 at 784.174 kb on - strand, within Sama_0631 at 784.174 kb on - strand, within Sama_0631 at 784.174 kb on - strand, within Sama_0631 at 784.267 kb on + strand, within Sama_0631 at 784.267 kb on + strand, within Sama_0631 at 784.267 kb on + strand, within Sama_0631 at 784.405 kb on + strand, within Sama_0631 at 784.405 kb on + strand, within Sama_0631 at 784.406 kb on - strand, within Sama_0631 at 784.406 kb on - strand, within Sama_0631 at 784.428 kb on + strand, within Sama_0631 at 784.428 kb on + strand, within Sama_0631 at 784.428 kb on + strand, within Sama_0631 at 784.429 kb on - strand, within Sama_0631 at 784.429 kb on - strand, within Sama_0631 at 784.484 kb on + strand, within Sama_0631 at 784.499 kb on - strand, within Sama_0631 at 784.563 kb on + strand, within Sama_0631 at 784.563 kb on + strand, within Sama_0631 at 784.564 kb on - strand, within Sama_0631 at 784.583 kb on + strand, within Sama_0631
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.025 mg/ml remove 781,450 + Sama_0629 0.21 +0.8 781,450 + Sama_0629 0.21 -0.5 781,462 + Sama_0629 0.22 +0.2 781,463 - Sama_0629 0.23 +0.2 781,463 - Sama_0629 0.23 +0.3 781,463 - Sama_0629 0.23 -1.0 781,492 - Sama_0629 0.25 -1.1 781,513 + Sama_0629 0.27 -0.9 781,514 - Sama_0629 0.27 -0.1 781,523 + Sama_0629 0.27 -0.2 781,523 + Sama_0629 0.27 -0.9 781,524 - Sama_0629 0.28 -0.4 781,592 + Sama_0629 0.33 -2.9 781,592 + Sama_0629 0.33 -2.0 781,593 - Sama_0629 0.33 -0.8 781,624 + Sama_0629 0.36 -0.5 781,727 + Sama_0629 0.44 -0.1 781,727 + Sama_0629 0.44 -2.2 781,727 + Sama_0629 0.44 -0.5 781,727 + Sama_0629 0.44 -0.2 781,727 + Sama_0629 0.44 -0.2 781,727 + Sama_0629 0.44 +0.1 781,727 + Sama_0629 0.44 -0.2 781,727 + Sama_0629 0.44 -0.6 781,727 + Sama_0629 0.44 +1.1 781,727 + Sama_0629 0.44 -0.1 781,727 + Sama_0629 0.44 -0.6 781,727 + Sama_0629 0.44 -0.5 781,727 + Sama_0629 0.44 +0.3 781,727 + Sama_0629 0.44 -0.7 781,728 - Sama_0629 0.44 -1.3 781,728 - Sama_0629 0.44 -1.1 781,728 - Sama_0629 0.44 -1.7 781,728 - Sama_0629 0.44 -0.2 781,728 - Sama_0629 0.44 -2.5 781,728 - Sama_0629 0.44 -1.1 781,728 - Sama_0629 0.44 -1.1 781,728 - Sama_0629 0.44 -1.4 781,728 - Sama_0629 0.44 -0.9 781,728 - Sama_0629 0.44 -2.2 781,728 - Sama_0629 0.44 +2.6 781,761 + Sama_0629 0.47 -3.1 781,762 - Sama_0629 0.47 -1.8 781,762 - Sama_0629 0.47 +0.3 781,910 + Sama_0629 0.59 -0.2 781,910 + Sama_0629 0.59 -0.4 781,911 - Sama_0629 0.59 -0.1 781,911 - Sama_0629 0.59 -0.3 781,933 + Sama_0629 0.61 +0.6 781,934 - Sama_0629 0.61 -0.7 781,934 - Sama_0629 0.61 -0.5 781,934 - Sama_0629 0.61 -0.7 781,934 - Sama_0629 0.61 -1.6 781,971 + Sama_0629 0.64 -0.7 781,972 - Sama_0629 0.64 -1.5 781,972 - Sama_0629 0.64 -1.2 781,972 - Sama_0629 0.64 +0.2 781,972 - Sama_0629 0.64 -0.5 782,065 + Sama_0629 0.72 -3.0 782,065 + Sama_0629 0.72 -0.9 782,080 + Sama_0629 0.73 +1.9 782,081 - Sama_0629 0.73 -1.4 782,081 - Sama_0629 0.73 +0.2 782,081 - Sama_0629 0.73 -0.2 782,089 + Sama_0629 0.74 -0.2 782,090 - Sama_0629 0.74 +0.6 782,090 - Sama_0629 0.74 +1.5 782,090 - Sama_0629 0.74 -1.1 782,090 - Sama_0629 0.74 -0.9 782,090 - Sama_0629 0.74 -0.3 782,090 - Sama_0629 0.74 -0.4 782,139 + Sama_0629 0.78 -1.5 782,140 - Sama_0629 0.78 -1.4 782,140 - Sama_0629 0.78 -1.2 782,140 - Sama_0629 0.78 -1.1 782,249 - Sama_0629 0.87 -0.0 782,249 - Sama_0629 0.87 -0.7 782,323 - -0.5 782,346 + -1.1 782,385 + -2.0 782,402 - -0.6 782,420 + -1.2 782,450 + +0.2 782,451 - -1.1 782,705 + rumB Sama_0630 0.23 -0.4 782,764 + rumB Sama_0630 0.28 -0.1 782,765 - rumB Sama_0630 0.28 +2.0 782,803 + rumB Sama_0630 0.32 +0.5 782,803 + rumB Sama_0630 0.32 -3.0 782,804 - rumB Sama_0630 0.32 -0.9 782,804 - rumB Sama_0630 0.32 -1.2 782,804 - rumB Sama_0630 0.32 -1.5 782,804 - rumB Sama_0630 0.32 -3.8 782,804 - rumB Sama_0630 0.32 +1.0 782,804 - rumB Sama_0630 0.32 -3.6 782,810 - rumB Sama_0630 0.32 -2.4 782,810 - rumB Sama_0630 0.32 -0.2 782,845 + rumB Sama_0630 0.35 -0.1 782,845 + rumB Sama_0630 0.35 -1.0 782,846 - rumB Sama_0630 0.35 -1.2 782,846 - rumB Sama_0630 0.35 +0.1 782,846 - rumB Sama_0630 0.35 -0.7 782,932 + rumB Sama_0630 0.43 -0.6 782,932 + rumB Sama_0630 0.43 -1.4 782,932 + rumB Sama_0630 0.43 -1.4 782,932 + rumB Sama_0630 0.43 +1.5 782,933 - rumB Sama_0630 0.43 +0.4 783,027 + rumB Sama_0630 0.51 -1.5 783,027 + rumB Sama_0630 0.51 -0.5 783,027 + rumB Sama_0630 0.51 +0.5 783,099 + rumB Sama_0630 0.57 -1.0 783,100 - rumB Sama_0630 0.57 -0.5 783,102 - rumB Sama_0630 0.57 +0.2 783,132 + rumB Sama_0630 0.60 -0.8 783,132 + rumB Sama_0630 0.60 +0.7 783,132 + rumB Sama_0630 0.60 -0.3 783,133 - rumB Sama_0630 0.60 -2.1 783,133 - rumB Sama_0630 0.60 -3.1 783,133 - rumB Sama_0630 0.60 -2.9 783,169 - rumB Sama_0630 0.63 -1.0 783,280 + rumB Sama_0630 0.73 -1.5 783,357 + rumB Sama_0630 0.80 -1.7 783,357 + rumB Sama_0630 0.80 -1.1 783,357 + rumB Sama_0630 0.80 +0.1 783,357 + rumB Sama_0630 0.80 -2.4 783,434 + rumB Sama_0630 0.86 +0.0 783,435 - rumB Sama_0630 0.86 +1.1 783,435 - rumB Sama_0630 0.86 -0.1 783,435 - rumB Sama_0630 0.86 -0.9 783,445 + rumB Sama_0630 0.87 -1.1 783,446 - rumB Sama_0630 0.87 -1.4 783,488 + -1.5 783,668 + -0.6 783,668 + -0.3 783,668 + -1.5 783,668 + +1.4 783,668 + +0.4 783,668 + +0.5 783,668 + -0.9 783,669 - -0.7 783,669 - -0.5 783,669 - +1.7 783,670 + -2.5 783,670 + -0.9 783,670 + -2.2 783,670 + +0.9 783,670 + -0.2 783,670 + -1.9 783,670 + -2.5 783,670 + +1.2 783,671 - -0.2 783,671 - -1.1 783,671 - +0.4 783,671 - -0.5 783,671 - +0.3 783,704 + Sama_0631 0.12 -1.1 783,705 - Sama_0631 0.12 -0.2 783,750 + Sama_0631 0.16 -2.5 783,815 + Sama_0631 0.21 -0.1 783,815 + Sama_0631 0.21 -0.0 783,815 + Sama_0631 0.21 -1.5 783,816 - Sama_0631 0.21 -0.2 783,816 - Sama_0631 0.21 -1.7 783,818 + Sama_0631 0.21 -0.7 783,819 - Sama_0631 0.22 +0.7 783,819 - Sama_0631 0.22 -1.5 783,819 - Sama_0631 0.22 -1.1 783,819 - Sama_0631 0.22 -1.3 783,819 - Sama_0631 0.22 -1.6 783,821 + Sama_0631 0.22 +1.5 783,850 - Sama_0631 0.24 -1.5 783,875 + Sama_0631 0.26 -0.2 783,875 + Sama_0631 0.26 +0.0 783,876 - Sama_0631 0.26 -2.2 783,940 + Sama_0631 0.32 -3.3 783,940 + Sama_0631 0.32 -1.5 783,941 - Sama_0631 0.32 -0.1 783,941 - Sama_0631 0.32 -0.5 783,952 + Sama_0631 0.33 -1.1 783,952 + Sama_0631 0.33 -0.8 783,952 + Sama_0631 0.33 -0.1 783,952 + Sama_0631 0.33 +0.3 783,952 + Sama_0631 0.33 -0.3 783,952 + Sama_0631 0.33 +0.1 783,952 + Sama_0631 0.33 -0.5 783,953 - Sama_0631 0.33 +0.2 783,953 - Sama_0631 0.33 +0.2 783,966 - Sama_0631 0.34 -0.9 783,966 - Sama_0631 0.34 -1.3 784,054 + Sama_0631 0.41 -1.3 784,054 + Sama_0631 0.41 -2.0 784,054 + Sama_0631 0.41 -2.1 784,054 + Sama_0631 0.41 -1.0 784,054 + Sama_0631 0.41 +0.1 784,054 + Sama_0631 0.41 -1.2 784,055 - Sama_0631 0.41 -2.6 784,055 - Sama_0631 0.41 -1.1 784,055 - Sama_0631 0.41 -2.9 784,162 - Sama_0631 0.50 -2.9 784,173 + Sama_0631 0.51 +0.3 784,174 - Sama_0631 0.51 -1.5 784,174 - Sama_0631 0.51 +0.1 784,174 - Sama_0631 0.51 +0.9 784,174 - Sama_0631 0.51 -0.1 784,267 + Sama_0631 0.59 +0.3 784,267 + Sama_0631 0.59 +0.1 784,267 + Sama_0631 0.59 -0.1 784,405 + Sama_0631 0.71 -2.7 784,405 + Sama_0631 0.71 -1.7 784,406 - Sama_0631 0.71 -0.9 784,406 - Sama_0631 0.71 -0.9 784,428 + Sama_0631 0.72 +1.1 784,428 + Sama_0631 0.72 -1.5 784,428 + Sama_0631 0.72 -0.7 784,429 - Sama_0631 0.73 -0.8 784,429 - Sama_0631 0.73 +0.5 784,484 + Sama_0631 0.77 +0.3 784,499 - Sama_0631 0.78 +0.7 784,563 + Sama_0631 0.84 -0.3 784,563 + Sama_0631 0.84 -2.9 784,564 - Sama_0631 0.84 -0.3 784,583 + Sama_0631 0.85 +3.3
Or see this region's nucleotide sequence