Strain Fitness in Shewanella amazonensis SB2B around Sama_0360

Experiment: Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlpxC and Sama_0360 are separated by 16 nucleotidesSama_0360 and Sama_0361 are separated by 27 nucleotidesSama_0361 and Sama_0362 are separated by 57 nucleotides Sama_0359: lpxC - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (RefSeq), at 430,462 to 431,382 lpxC Sama_0360: Sama_0360 - hypothetical protein (RefSeq), at 431,399 to 431,851 _0360 Sama_0361: Sama_0361 - peptidase M23B (RefSeq), at 431,879 to 432,778 _0361 Sama_0362: Sama_0362 - preprotein translocase subunit SecA (RefSeq), at 432,836 to 435,562 _0362 Position (kb) 431 432Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 431.386 kb on + strandat 431.386 kb on + strandat 431.387 kb on - strandat 431.387 kb on - strandat 431.387 kb on - strandat 431.389 kb on + strandat 431.389 kb on + strandat 431.389 kb on + strandat 431.389 kb on + strandat 431.390 kb on - strandat 431.390 kb on - strandat 431.394 kb on + strandat 431.467 kb on + strand, within Sama_0360at 431.467 kb on + strand, within Sama_0360at 431.467 kb on + strand, within Sama_0360at 431.467 kb on + strand, within Sama_0360at 431.468 kb on - strand, within Sama_0360at 431.857 kb on - strandat 431.878 kb on + strandat 431.878 kb on + strandat 431.878 kb on + strandat 431.879 kb on - strandat 431.879 kb on - strandat 431.879 kb on - strandat 431.879 kb on - strandat 431.887 kb on - strandat 431.887 kb on - strandat 431.896 kb on + strandat 431.987 kb on + strand, within Sama_0361at 431.988 kb on - strand, within Sama_0361at 432.122 kb on + strand, within Sama_0361at 432.122 kb on + strand, within Sama_0361at 432.122 kb on + strand, within Sama_0361at 432.122 kb on + strand, within Sama_0361at 432.123 kb on - strand, within Sama_0361at 432.123 kb on - strand, within Sama_0361at 432.123 kb on - strand, within Sama_0361at 432.149 kb on - strand, within Sama_0361at 432.189 kb on - strand, within Sama_0361at 432.277 kb on + strand, within Sama_0361at 432.277 kb on + strand, within Sama_0361at 432.277 kb on + strand, within Sama_0361at 432.277 kb on + strand, within Sama_0361at 432.278 kb on - strand, within Sama_0361at 432.278 kb on - strand, within Sama_0361at 432.286 kb on + strand, within Sama_0361at 432.286 kb on + strand, within Sama_0361at 432.286 kb on + strand, within Sama_0361at 432.287 kb on - strand, within Sama_0361at 432.287 kb on - strand, within Sama_0361at 432.287 kb on - strand, within Sama_0361at 432.292 kb on + strand, within Sama_0361at 432.292 kb on + strand, within Sama_0361at 432.292 kb on + strand, within Sama_0361at 432.292 kb on + strand, within Sama_0361at 432.292 kb on + strand, within Sama_0361at 432.293 kb on - strand, within Sama_0361at 432.293 kb on - strand, within Sama_0361at 432.293 kb on - strand, within Sama_0361at 432.293 kb on - strand, within Sama_0361at 432.314 kb on - strand, within Sama_0361at 432.314 kb on - strand, within Sama_0361at 432.337 kb on - strand, within Sama_0361at 432.337 kb on - strand, within Sama_0361at 432.337 kb on - strand, within Sama_0361at 432.364 kb on + strand, within Sama_0361at 432.364 kb on + strand, within Sama_0361at 432.366 kb on + strand, within Sama_0361at 432.366 kb on + strand, within Sama_0361at 432.366 kb on + strand, within Sama_0361at 432.366 kb on + strand, within Sama_0361at 432.366 kb on + strand, within Sama_0361at 432.366 kb on + strand, within Sama_0361at 432.366 kb on + strand, within Sama_0361at 432.366 kb on + strand, within Sama_0361at 432.366 kb on + strand, within Sama_0361at 432.366 kb on + strand, within Sama_0361at 432.366 kb on + strand, within Sama_0361at 432.366 kb on + strand, within Sama_0361at 432.380 kb on + strand, within Sama_0361at 432.380 kb on + strand, within Sama_0361at 432.380 kb on + strand, within Sama_0361at 432.380 kb on + strand, within Sama_0361at 432.380 kb on + strand, within Sama_0361at 432.380 kb on + strand, within Sama_0361at 432.380 kb on + strand, within Sama_0361at 432.380 kb on + strand, within Sama_0361at 432.384 kb on + strand, within Sama_0361at 432.384 kb on + strand, within Sama_0361at 432.384 kb on + strand, within Sama_0361at 432.384 kb on + strand, within Sama_0361at 432.384 kb on + strand, within Sama_0361at 432.384 kb on + strand, within Sama_0361at 432.432 kb on + strand, within Sama_0361at 432.469 kb on + strand, within Sama_0361at 432.469 kb on + strand, within Sama_0361at 432.469 kb on + strand, within Sama_0361at 432.469 kb on + strand, within Sama_0361at 432.469 kb on + strand, within Sama_0361at 432.469 kb on + strand, within Sama_0361at 432.469 kb on + strand, within Sama_0361at 432.528 kb on + strand, within Sama_0361at 432.576 kb on + strand, within Sama_0361at 432.576 kb on + strand, within Sama_0361at 432.576 kb on + strand, within Sama_0361at 432.576 kb on + strand, within Sama_0361at 432.616 kb on + strand, within Sama_0361at 432.616 kb on + strand, within Sama_0361at 432.630 kb on + strand, within Sama_0361at 432.630 kb on + strand, within Sama_0361at 432.630 kb on + strand, within Sama_0361at 432.630 kb on + strand, within Sama_0361at 432.636 kb on + strand, within Sama_0361at 432.636 kb on + strand, within Sama_0361at 432.636 kb on + strand, within Sama_0361at 432.636 kb on + strand, within Sama_0361at 432.636 kb on + strand, within Sama_0361at 432.636 kb on + strand, within Sama_0361at 432.636 kb on + strand, within Sama_0361at 432.636 kb on + strand, within Sama_0361at 432.636 kb on + strand, within Sama_0361at 432.645 kb on + strand, within Sama_0361at 432.694 kb on + strandat 432.755 kb on + strandat 432.755 kb on + strandat 432.755 kb on + strandat 432.755 kb on + strandat 432.755 kb on + strandat 432.755 kb on + strandat 432.776 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.025 mg/ml
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431,386 + -0.5
431,386 + +0.6
431,387 - -1.9
431,387 - -3.0
431,387 - -1.2
431,389 + +1.1
431,389 + -0.4
431,389 + -0.0
431,389 + +0.4
431,390 - -1.3
431,390 - +0.1
431,394 + +0.1
431,467 + Sama_0360 0.15 -3.2
431,467 + Sama_0360 0.15 -0.4
431,467 + Sama_0360 0.15 -0.7
431,467 + Sama_0360 0.15 -2.9
431,468 - Sama_0360 0.15 -4.2
431,857 - -0.0
431,878 + -2.9
431,878 + +0.9
431,878 + -1.2
431,879 - -0.4
431,879 - -2.4
431,879 - +3.0
431,879 - -1.2
431,887 - +0.4
431,887 - -0.4
431,896 + -1.0
431,987 + Sama_0361 0.12 -2.6
431,988 - Sama_0361 0.12 -0.9
432,122 + Sama_0361 0.27 -0.1
432,122 + Sama_0361 0.27 +0.7
432,122 + Sama_0361 0.27 +0.9
432,122 + Sama_0361 0.27 -1.0
432,123 - Sama_0361 0.27 -1.4
432,123 - Sama_0361 0.27 -0.2
432,123 - Sama_0361 0.27 -0.7
432,149 - Sama_0361 0.30 +0.1
432,189 - Sama_0361 0.34 -0.5
432,277 + Sama_0361 0.44 -0.5
432,277 + Sama_0361 0.44 -0.5
432,277 + Sama_0361 0.44 +0.6
432,277 + Sama_0361 0.44 +0.6
432,278 - Sama_0361 0.44 +0.5
432,278 - Sama_0361 0.44 +0.1
432,286 + Sama_0361 0.45 -1.4
432,286 + Sama_0361 0.45 +0.6
432,286 + Sama_0361 0.45 -3.6
432,287 - Sama_0361 0.45 +1.1
432,287 - Sama_0361 0.45 -0.0
432,287 - Sama_0361 0.45 -0.5
432,292 + Sama_0361 0.46 -0.4
432,292 + Sama_0361 0.46 -0.3
432,292 + Sama_0361 0.46 +0.2
432,292 + Sama_0361 0.46 +0.1
432,292 + Sama_0361 0.46 -0.8
432,293 - Sama_0361 0.46 +0.0
432,293 - Sama_0361 0.46 -2.6
432,293 - Sama_0361 0.46 -0.4
432,293 - Sama_0361 0.46 +1.5
432,314 - Sama_0361 0.48 +1.3
432,314 - Sama_0361 0.48 -1.2
432,337 - Sama_0361 0.51 -1.9
432,337 - Sama_0361 0.51 +0.7
432,337 - Sama_0361 0.51 +0.6
432,364 + Sama_0361 0.54 -0.5
432,364 + Sama_0361 0.54 +1.5
432,366 + Sama_0361 0.54 -0.1
432,366 + Sama_0361 0.54 +0.6
432,366 + Sama_0361 0.54 +0.6
432,366 + Sama_0361 0.54 -1.0
432,366 + Sama_0361 0.54 +1.1
432,366 + Sama_0361 0.54 -0.1
432,366 + Sama_0361 0.54 -2.0
432,366 + Sama_0361 0.54 +0.8
432,366 + Sama_0361 0.54 +0.2
432,366 + Sama_0361 0.54 +0.0
432,366 + Sama_0361 0.54 +1.1
432,366 + Sama_0361 0.54 -0.9
432,380 + Sama_0361 0.56 +0.4
432,380 + Sama_0361 0.56 +0.1
432,380 + Sama_0361 0.56 +1.5
432,380 + Sama_0361 0.56 +0.1
432,380 + Sama_0361 0.56 -0.0
432,380 + Sama_0361 0.56 +0.6
432,380 + Sama_0361 0.56 -0.4
432,380 + Sama_0361 0.56 -0.6
432,384 + Sama_0361 0.56 -1.7
432,384 + Sama_0361 0.56 -0.3
432,384 + Sama_0361 0.56 +0.5
432,384 + Sama_0361 0.56 -1.3
432,384 + Sama_0361 0.56 -0.6
432,384 + Sama_0361 0.56 +0.9
432,432 + Sama_0361 0.61 -0.1
432,469 + Sama_0361 0.66 -0.4
432,469 + Sama_0361 0.66 +1.0
432,469 + Sama_0361 0.66 +0.7
432,469 + Sama_0361 0.66 +0.4
432,469 + Sama_0361 0.66 -0.2
432,469 + Sama_0361 0.66 -1.2
432,469 + Sama_0361 0.66 -1.0
432,528 + Sama_0361 0.72 -0.6
432,576 + Sama_0361 0.77 +1.0
432,576 + Sama_0361 0.77 +1.3
432,576 + Sama_0361 0.77 -0.0
432,576 + Sama_0361 0.77 +0.0
432,616 + Sama_0361 0.82 +1.3
432,616 + Sama_0361 0.82 +0.2
432,630 + Sama_0361 0.83 +1.9
432,630 + Sama_0361 0.83 -2.3
432,630 + Sama_0361 0.83 +0.3
432,630 + Sama_0361 0.83 -0.3
432,636 + Sama_0361 0.84 -0.0
432,636 + Sama_0361 0.84 -0.9
432,636 + Sama_0361 0.84 +0.3
432,636 + Sama_0361 0.84 -1.0
432,636 + Sama_0361 0.84 -0.4
432,636 + Sama_0361 0.84 +0.1
432,636 + Sama_0361 0.84 +1.1
432,636 + Sama_0361 0.84 +0.8
432,636 + Sama_0361 0.84 +0.1
432,645 + Sama_0361 0.85 -3.4
432,694 + -0.2
432,755 + +0.8
432,755 + +0.1
432,755 + -0.2
432,755 + -1.3
432,755 + -1.2
432,755 + -0.1
432,776 + +0.5

Or see this region's nucleotide sequence