Strain Fitness in Shewanella amazonensis SB2B around Sama_0283

Experiment: Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0281 and Sama_0282 overlap by 11 nucleotidesSama_0282 and Sama_0283 are separated by 25 nucleotidesSama_0283 and Sama_0284 are separated by 290 nucleotides Sama_0281: Sama_0281 - modification methylase (cytosine-specific methyltransferase (RefSeq), at 328,984 to 330,546 _0281 Sama_0282: Sama_0282 - putative DNA mismatch endonuclease protein (RefSeq), at 330,536 to 331,021 _0282 Sama_0283: Sama_0283 - hypothetical protein (RefSeq), at 331,047 to 331,655 _0283 Sama_0284: Sama_0284 - sodium/alanine symporter (RefSeq), at 331,946 to 333,379 _0284 Position (kb) 331 332Strain fitness (log2 ratio) -3 -2 -1 0 1at 330.554 kb on + strandat 330.555 kb on - strandat 330.555 kb on - strandat 330.555 kb on - strandat 330.555 kb on - strandat 330.555 kb on - strandat 330.686 kb on - strand, within Sama_0282at 330.689 kb on + strand, within Sama_0282at 330.689 kb on + strand, within Sama_0282at 330.689 kb on + strand, within Sama_0282at 330.690 kb on - strand, within Sama_0282at 330.690 kb on - strand, within Sama_0282at 330.700 kb on - strand, within Sama_0282at 330.708 kb on + strand, within Sama_0282at 330.708 kb on + strand, within Sama_0282at 330.709 kb on - strand, within Sama_0282at 330.709 kb on - strand, within Sama_0282at 330.709 kb on - strand, within Sama_0282at 330.859 kb on + strand, within Sama_0282at 330.859 kb on + strand, within Sama_0282at 330.859 kb on + strand, within Sama_0282at 330.859 kb on + strand, within Sama_0282at 330.860 kb on - strand, within Sama_0282at 330.860 kb on - strand, within Sama_0282at 330.860 kb on - strand, within Sama_0282at 330.860 kb on - strand, within Sama_0282at 330.860 kb on - strand, within Sama_0282at 330.968 kb on + strand, within Sama_0282at 330.968 kb on + strand, within Sama_0282at 330.969 kb on - strand, within Sama_0282at 331.030 kb on - strandat 331.042 kb on + strandat 331.042 kb on + strandat 331.042 kb on + strandat 331.049 kb on - strandat 331.059 kb on + strandat 331.059 kb on + strandat 331.060 kb on - strandat 331.154 kb on + strand, within Sama_0283at 331.154 kb on + strand, within Sama_0283at 331.154 kb on + strand, within Sama_0283at 331.154 kb on + strand, within Sama_0283at 331.154 kb on + strand, within Sama_0283at 331.154 kb on + strand, within Sama_0283at 331.154 kb on + strand, within Sama_0283at 331.155 kb on - strand, within Sama_0283at 331.155 kb on - strand, within Sama_0283at 331.155 kb on - strand, within Sama_0283at 331.155 kb on - strand, within Sama_0283at 331.155 kb on - strand, within Sama_0283at 331.155 kb on - strand, within Sama_0283at 331.155 kb on - strand, within Sama_0283at 331.192 kb on + strand, within Sama_0283at 331.193 kb on - strand, within Sama_0283at 331.193 kb on - strand, within Sama_0283at 331.193 kb on - strand, within Sama_0283at 331.193 kb on - strand, within Sama_0283at 331.193 kb on - strand, within Sama_0283at 331.202 kb on + strand, within Sama_0283at 331.253 kb on + strand, within Sama_0283at 331.263 kb on - strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.351 kb on - strand, within Sama_0283at 331.351 kb on - strand, within Sama_0283at 331.351 kb on - strand, within Sama_0283at 331.351 kb on - strand, within Sama_0283at 331.356 kb on + strand, within Sama_0283at 331.356 kb on + strand, within Sama_0283at 331.426 kb on + strand, within Sama_0283at 331.434 kb on + strand, within Sama_0283at 331.435 kb on - strand, within Sama_0283at 331.454 kb on + strand, within Sama_0283at 331.474 kb on - strand, within Sama_0283at 331.521 kb on + strand, within Sama_0283at 331.521 kb on + strand, within Sama_0283at 331.521 kb on + strand, within Sama_0283at 331.521 kb on + strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.569 kb on + strand, within Sama_0283at 331.569 kb on + strand, within Sama_0283at 331.569 kb on + strand, within Sama_0283at 331.570 kb on - strand, within Sama_0283at 331.570 kb on - strand, within Sama_0283at 331.570 kb on - strand, within Sama_0283at 331.574 kb on + strand, within Sama_0283at 331.574 kb on + strand, within Sama_0283at 331.574 kb on + strand, within Sama_0283at 331.574 kb on + strand, within Sama_0283at 331.574 kb on + strand, within Sama_0283at 331.574 kb on + strand, within Sama_0283at 331.575 kb on - strand, within Sama_0283at 331.575 kb on - strand, within Sama_0283at 331.575 kb on - strand, within Sama_0283at 331.655 kb on + strandat 331.655 kb on + strandat 331.655 kb on + strandat 331.656 kb on - strandat 331.668 kb on + strandat 331.668 kb on + strandat 331.668 kb on + strandat 331.669 kb on - strandat 331.669 kb on - strandat 331.669 kb on - strandat 331.669 kb on - strandat 331.694 kb on - strandat 331.703 kb on + strandat 331.741 kb on + strandat 331.741 kb on + strandat 331.741 kb on - strandat 331.742 kb on - strandat 331.746 kb on + strandat 331.746 kb on + strandat 331.746 kb on + strandat 331.746 kb on + strandat 331.784 kb on + strandat 331.785 kb on - strandat 331.809 kb on - strandat 331.809 kb on - strandat 331.830 kb on - strandat 331.837 kb on - strandat 331.843 kb on + strandat 331.889 kb on + strandat 331.889 kb on + strandat 331.890 kb on - strandat 331.890 kb on - strandat 331.901 kb on - strandat 331.908 kb on + strandat 331.908 kb on + strandat 331.909 kb on - strandat 331.909 kb on - strandat 331.909 kb on - strandat 331.909 kb on - strandat 331.909 kb on - strandat 331.929 kb on - strandat 331.933 kb on + strandat 332.057 kb on - strandat 332.057 kb on - strandat 332.060 kb on + strandat 332.060 kb on + strandat 332.060 kb on + strandat 332.060 kb on + strandat 332.085 kb on - strandat 332.088 kb on + strandat 332.088 kb on + strandat 332.088 kb on + strandat 332.089 kb on - strandat 332.106 kb on + strand, within Sama_0284at 332.107 kb on - strand, within Sama_0284at 332.107 kb on - strand, within Sama_0284at 332.146 kb on + strand, within Sama_0284at 332.147 kb on - strand, within Sama_0284at 332.147 kb on - strand, within Sama_0284at 332.147 kb on - strand, within Sama_0284at 332.204 kb on - strand, within Sama_0284at 332.227 kb on - strand, within Sama_0284at 332.227 kb on - strand, within Sama_0284at 332.317 kb on + strand, within Sama_0284at 332.317 kb on + strand, within Sama_0284at 332.317 kb on + strand, within Sama_0284at 332.317 kb on + strand, within Sama_0284at 332.317 kb on + strand, within Sama_0284at 332.317 kb on + strand, within Sama_0284at 332.318 kb on - strand, within Sama_0284at 332.318 kb on - strand, within Sama_0284at 332.318 kb on - strand, within Sama_0284at 332.318 kb on - strand, within Sama_0284at 332.318 kb on - strand, within Sama_0284at 332.318 kb on - strand, within Sama_0284at 332.318 kb on - strand, within Sama_0284at 332.318 kb on - strand, within Sama_0284at 332.321 kb on + strand, within Sama_0284at 332.321 kb on + strand, within Sama_0284at 332.322 kb on - strand, within Sama_0284at 332.322 kb on - strand, within Sama_0284at 332.366 kb on + strand, within Sama_0284at 332.366 kb on + strand, within Sama_0284at 332.366 kb on + strand, within Sama_0284at 332.366 kb on + strand, within Sama_0284at 332.366 kb on + strand, within Sama_0284at 332.366 kb on + strand, within Sama_0284at 332.366 kb on + strand, within Sama_0284at 332.366 kb on + strand, within Sama_0284at 332.367 kb on - strand, within Sama_0284at 332.367 kb on - strand, within Sama_0284at 332.367 kb on - strand, within Sama_0284at 332.367 kb on - strand, within Sama_0284at 332.367 kb on - strand, within Sama_0284at 332.367 kb on - strand, within Sama_0284at 332.367 kb on - strand, within Sama_0284at 332.367 kb on - strand, within Sama_0284at 332.367 kb on - strand, within Sama_0284at 332.367 kb on - strand, within Sama_0284at 332.371 kb on - strand, within Sama_0284at 332.374 kb on + strand, within Sama_0284at 332.375 kb on - strand, within Sama_0284at 332.440 kb on + strand, within Sama_0284at 332.489 kb on + strand, within Sama_0284at 332.489 kb on + strand, within Sama_0284at 332.490 kb on - strand, within Sama_0284at 332.500 kb on - strand, within Sama_0284at 332.647 kb on + strand, within Sama_0284at 332.648 kb on - strand, within Sama_0284

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.025 mg/ml
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330,554 + +0.0
330,555 - +0.5
330,555 - +0.3
330,555 - -0.0
330,555 - -0.2
330,555 - -1.8
330,686 - Sama_0282 0.31 +0.2
330,689 + Sama_0282 0.31 -3.0
330,689 + Sama_0282 0.31 +0.0
330,689 + Sama_0282 0.31 -0.5
330,690 - Sama_0282 0.32 -1.1
330,690 - Sama_0282 0.32 +0.9
330,700 - Sama_0282 0.34 -1.2
330,708 + Sama_0282 0.35 +0.5
330,708 + Sama_0282 0.35 -0.6
330,709 - Sama_0282 0.36 -1.6
330,709 - Sama_0282 0.36 -3.2
330,709 - Sama_0282 0.36 +0.7
330,859 + Sama_0282 0.66 -1.0
330,859 + Sama_0282 0.66 -0.3
330,859 + Sama_0282 0.66 -0.4
330,859 + Sama_0282 0.66 -0.3
330,860 - Sama_0282 0.67 -2.1
330,860 - Sama_0282 0.67 +0.1
330,860 - Sama_0282 0.67 -1.9
330,860 - Sama_0282 0.67 +0.3
330,860 - Sama_0282 0.67 +0.1
330,968 + Sama_0282 0.89 +1.0
330,968 + Sama_0282 0.89 -0.7
330,969 - Sama_0282 0.89 -0.3
331,030 - +0.0
331,042 + -0.0
331,042 + -0.4
331,042 + -0.2
331,049 - -2.7
331,059 + -2.2
331,059 + -1.2
331,060 - -0.3
331,154 + Sama_0283 0.18 -0.9
331,154 + Sama_0283 0.18 -0.6
331,154 + Sama_0283 0.18 -1.2
331,154 + Sama_0283 0.18 -1.0
331,154 + Sama_0283 0.18 -2.9
331,154 + Sama_0283 0.18 +0.5
331,154 + Sama_0283 0.18 -0.4
331,155 - Sama_0283 0.18 +0.2
331,155 - Sama_0283 0.18 -3.2
331,155 - Sama_0283 0.18 -0.8
331,155 - Sama_0283 0.18 -0.6
331,155 - Sama_0283 0.18 -1.3
331,155 - Sama_0283 0.18 -0.3
331,155 - Sama_0283 0.18 +0.3
331,192 + Sama_0283 0.24 -3.0
331,193 - Sama_0283 0.24 -1.8
331,193 - Sama_0283 0.24 -1.7
331,193 - Sama_0283 0.24 -0.2
331,193 - Sama_0283 0.24 -1.0
331,193 - Sama_0283 0.24 -1.0
331,202 + Sama_0283 0.25 -1.0
331,253 + Sama_0283 0.34 -2.9
331,263 - Sama_0283 0.35 -1.3
331,350 + Sama_0283 0.50 +0.0
331,350 + Sama_0283 0.50 -1.7
331,350 + Sama_0283 0.50 -0.6
331,350 + Sama_0283 0.50 +1.4
331,350 + Sama_0283 0.50 -0.8
331,350 + Sama_0283 0.50 -1.5
331,350 + Sama_0283 0.50 -1.0
331,350 + Sama_0283 0.50 -2.4
331,350 + Sama_0283 0.50 -1.3
331,350 + Sama_0283 0.50 -0.6
331,351 - Sama_0283 0.50 -0.9
331,351 - Sama_0283 0.50 -0.7
331,351 - Sama_0283 0.50 -0.0
331,351 - Sama_0283 0.50 -0.3
331,356 + Sama_0283 0.51 -1.4
331,356 + Sama_0283 0.51 -0.6
331,426 + Sama_0283 0.62 -0.4
331,434 + Sama_0283 0.64 -0.6
331,435 - Sama_0283 0.64 +0.6
331,454 + Sama_0283 0.67 -0.8
331,474 - Sama_0283 0.70 -3.0
331,521 + Sama_0283 0.78 -0.6
331,521 + Sama_0283 0.78 -1.2
331,521 + Sama_0283 0.78 -1.4
331,521 + Sama_0283 0.78 -1.0
331,522 - Sama_0283 0.78 -2.4
331,522 - Sama_0283 0.78 -1.4
331,522 - Sama_0283 0.78 -0.8
331,522 - Sama_0283 0.78 +0.9
331,522 - Sama_0283 0.78 -1.1
331,522 - Sama_0283 0.78 +0.3
331,522 - Sama_0283 0.78 -1.1
331,522 - Sama_0283 0.78 -0.1
331,569 + Sama_0283 0.86 -0.2
331,569 + Sama_0283 0.86 -1.2
331,569 + Sama_0283 0.86 -1.8
331,570 - Sama_0283 0.86 -0.9
331,570 - Sama_0283 0.86 +0.8
331,570 - Sama_0283 0.86 -1.1
331,574 + Sama_0283 0.87 -0.4
331,574 + Sama_0283 0.87 +0.6
331,574 + Sama_0283 0.87 -0.5
331,574 + Sama_0283 0.87 -1.9
331,574 + Sama_0283 0.87 -1.8
331,574 + Sama_0283 0.87 -0.6
331,575 - Sama_0283 0.87 -0.2
331,575 - Sama_0283 0.87 -2.1
331,575 - Sama_0283 0.87 -0.2
331,655 + -1.1
331,655 + -0.3
331,655 + -0.7
331,656 - +0.2
331,668 + -0.7
331,668 + -3.6
331,668 + -0.2
331,669 - +0.3
331,669 - -0.9
331,669 - +0.8
331,669 - -3.6
331,694 - -0.1
331,703 + -0.1
331,741 + +0.0
331,741 + +0.5
331,741 - -1.3
331,742 - -1.0
331,746 + +0.2
331,746 + +0.8
331,746 + -0.6
331,746 + +0.4
331,784 + -0.4
331,785 - -1.6
331,809 - +0.3
331,809 - -0.9
331,830 - -0.6
331,837 - -1.6
331,843 + -0.8
331,889 + -0.9
331,889 + -1.8
331,890 - -0.8
331,890 - +1.3
331,901 - +0.3
331,908 + -0.1
331,908 + -1.8
331,909 - +0.0
331,909 - -1.7
331,909 - +1.0
331,909 - +1.0
331,909 - -0.5
331,929 - -0.6
331,933 + +0.2
332,057 - -1.4
332,057 - -0.6
332,060 + -0.2
332,060 + -1.3
332,060 + -0.2
332,060 + -3.3
332,085 - -0.9
332,088 + +0.6
332,088 + -2.3
332,088 + +0.6
332,089 - -0.9
332,106 + Sama_0284 0.11 -0.7
332,107 - Sama_0284 0.11 -0.7
332,107 - Sama_0284 0.11 -0.7
332,146 + Sama_0284 0.14 -0.8
332,147 - Sama_0284 0.14 +0.4
332,147 - Sama_0284 0.14 +0.0
332,147 - Sama_0284 0.14 -2.4
332,204 - Sama_0284 0.18 -1.1
332,227 - Sama_0284 0.20 +0.1
332,227 - Sama_0284 0.20 -1.4
332,317 + Sama_0284 0.26 -0.3
332,317 + Sama_0284 0.26 -0.6
332,317 + Sama_0284 0.26 -1.7
332,317 + Sama_0284 0.26 +0.3
332,317 + Sama_0284 0.26 -2.1
332,317 + Sama_0284 0.26 -0.5
332,318 - Sama_0284 0.26 +0.4
332,318 - Sama_0284 0.26 +0.1
332,318 - Sama_0284 0.26 -0.6
332,318 - Sama_0284 0.26 -0.7
332,318 - Sama_0284 0.26 -3.1
332,318 - Sama_0284 0.26 -1.0
332,318 - Sama_0284 0.26 +1.3
332,318 - Sama_0284 0.26 -1.0
332,321 + Sama_0284 0.26 +1.7
332,321 + Sama_0284 0.26 +0.4
332,322 - Sama_0284 0.26 -0.9
332,322 - Sama_0284 0.26 +1.2
332,366 + Sama_0284 0.29 -1.1
332,366 + Sama_0284 0.29 +0.6
332,366 + Sama_0284 0.29 -0.8
332,366 + Sama_0284 0.29 -0.2
332,366 + Sama_0284 0.29 -0.1
332,366 + Sama_0284 0.29 -0.7
332,366 + Sama_0284 0.29 -1.2
332,366 + Sama_0284 0.29 -1.1
332,367 - Sama_0284 0.29 +0.2
332,367 - Sama_0284 0.29 +0.4
332,367 - Sama_0284 0.29 -0.4
332,367 - Sama_0284 0.29 -0.0
332,367 - Sama_0284 0.29 -0.2
332,367 - Sama_0284 0.29 -0.1
332,367 - Sama_0284 0.29 +0.4
332,367 - Sama_0284 0.29 +0.2
332,367 - Sama_0284 0.29 +0.2
332,367 - Sama_0284 0.29 -0.8
332,371 - Sama_0284 0.30 -0.7
332,374 + Sama_0284 0.30 -1.3
332,375 - Sama_0284 0.30 -0.3
332,440 + Sama_0284 0.34 -1.6
332,489 + Sama_0284 0.38 -2.4
332,489 + Sama_0284 0.38 -1.6
332,490 - Sama_0284 0.38 -2.4
332,500 - Sama_0284 0.39 -0.6
332,647 + Sama_0284 0.49 -0.8
332,648 - Sama_0284 0.49 -1.0

Or see this region's nucleotide sequence