Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0852

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0851 and Psest_0852 are separated by 171 nucleotidesPsest_0852 and Psest_0853 overlap by 14 nucleotidesPsest_0853 and Psest_0854 are separated by 18 nucleotides Psest_0851: Psest_0851 - Transcriptional regulators, at 921,490 to 922,359 _0851 Psest_0852: Psest_0852 - glucose-6-phosphate 1-dehydrogenase, at 922,531 to 924,000 _0852 Psest_0853: Psest_0853 - 6-phosphogluconolactonase, at 923,987 to 924,700 _0853 Psest_0854: Psest_0854 - Entner-Doudoroff aldolase, at 924,719 to 925,456 _0854 Position (kb) 922 923 924 925Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 921.542 kb on - strandat 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.797 kb on + strand, within Psest_0851at 922.067 kb on + strand, within Psest_0851at 922.067 kb on + strand, within Psest_0851at 922.068 kb on - strand, within Psest_0851at 922.068 kb on - strand, within Psest_0851at 922.348 kb on + strandat 922.399 kb on + strandat 922.399 kb on + strandat 922.399 kb on + strandat 922.542 kb on - strandat 922.542 kb on - strandat 922.618 kb on + strandat 922.619 kb on - strandat 922.793 kb on - strand, within Psest_0852at 922.897 kb on + strand, within Psest_0852at 923.041 kb on + strand, within Psest_0852at 923.041 kb on + strand, within Psest_0852at 923.056 kb on + strand, within Psest_0852at 923.387 kb on - strand, within Psest_0852at 923.426 kb on - strand, within Psest_0852at 923.524 kb on + strand, within Psest_0852at 923.524 kb on + strand, within Psest_0852at 923.524 kb on + strand, within Psest_0852at 923.596 kb on + strand, within Psest_0852at 923.596 kb on + strand, within Psest_0852at 923.597 kb on - strand, within Psest_0852at 923.758 kb on + strand, within Psest_0852at 923.759 kb on - strand, within Psest_0852at 923.855 kb on - strandat 923.920 kb on + strandat 923.986 kb on + strandat 923.986 kb on + strandat 923.998 kb on + strandat 924.321 kb on - strand, within Psest_0853at 924.370 kb on - strand, within Psest_0853at 924.396 kb on + strand, within Psest_0853at 924.396 kb on + strand, within Psest_0853at 924.396 kb on + strand, within Psest_0853at 924.396 kb on + strand, within Psest_0853at 924.396 kb on + strand, within Psest_0853at 924.397 kb on - strand, within Psest_0853at 924.397 kb on - strand, within Psest_0853at 924.397 kb on - strand, within Psest_0853at 924.397 kb on - strand, within Psest_0853at 924.397 kb on - strand, within Psest_0853at 924.686 kb on + strandat 924.687 kb on - strandat 924.687 kb on - strandat 924.727 kb on + strandat 924.728 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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921,542 - +1.4
921,647 + Psest_0851 0.18 -0.1
921,647 + Psest_0851 0.18 +0.8
921,647 + Psest_0851 0.18 -0.8
921,647 + Psest_0851 0.18 +0.1
921,647 + Psest_0851 0.18 -1.0
921,647 + Psest_0851 0.18 -0.3
921,647 + Psest_0851 0.18 +1.2
921,647 + Psest_0851 0.18 +0.9
921,647 + Psest_0851 0.18 +0.2
921,647 + Psest_0851 0.18 -0.0
921,647 + Psest_0851 0.18 -1.4
921,647 + Psest_0851 0.18 +1.9
921,647 + Psest_0851 0.18 -0.3
921,647 + Psest_0851 0.18 +0.4
921,647 + Psest_0851 0.18 +3.8
921,647 + Psest_0851 0.18 +0.6
921,647 + Psest_0851 0.18 -0.3
921,647 + Psest_0851 0.18 +1.6
921,647 + Psest_0851 0.18 -0.2
921,647 + Psest_0851 0.18 +0.0
921,647 + Psest_0851 0.18 -1.4
921,647 + Psest_0851 0.18 +1.2
921,648 - Psest_0851 0.18 -0.4
921,648 - Psest_0851 0.18 -0.4
921,648 - Psest_0851 0.18 +0.6
921,648 - Psest_0851 0.18 +0.4
921,648 - Psest_0851 0.18 -0.2
921,648 - Psest_0851 0.18 +1.8
921,648 - Psest_0851 0.18 -0.4
921,648 - Psest_0851 0.18 -0.2
921,648 - Psest_0851 0.18 -0.4
921,648 - Psest_0851 0.18 +0.5
921,648 - Psest_0851 0.18 -0.6
921,648 - Psest_0851 0.18 -0.8
921,648 - Psest_0851 0.18 -0.4
921,648 - Psest_0851 0.18 -1.1
921,648 - Psest_0851 0.18 +0.2
921,648 - Psest_0851 0.18 +1.6
921,648 - Psest_0851 0.18 +0.8
921,648 - Psest_0851 0.18 -0.0
921,648 - Psest_0851 0.18 -0.2
921,648 - Psest_0851 0.18 +1.4
921,797 + Psest_0851 0.35 -1.1
922,067 + Psest_0851 0.66 -1.0
922,067 + Psest_0851 0.66 +0.6
922,068 - Psest_0851 0.66 +1.2
922,068 - Psest_0851 0.66 -0.3
922,348 + -0.8
922,399 + +1.6
922,399 + -1.1
922,399 + +0.9
922,542 - +1.9
922,542 - -1.3
922,618 + +1.2
922,619 - +0.8
922,793 - Psest_0852 0.18 -0.3
922,897 + Psest_0852 0.25 -0.5
923,041 + Psest_0852 0.35 -2.4
923,041 + Psest_0852 0.35 -0.6
923,056 + Psest_0852 0.36 -0.8
923,387 - Psest_0852 0.58 +0.7
923,426 - Psest_0852 0.61 -0.9
923,524 + Psest_0852 0.68 +0.2
923,524 + Psest_0852 0.68 -0.6
923,524 + Psest_0852 0.68 -0.2
923,596 + Psest_0852 0.72 +1.2
923,596 + Psest_0852 0.72 +1.0
923,597 - Psest_0852 0.73 -0.7
923,758 + Psest_0852 0.83 +0.6
923,759 - Psest_0852 0.84 -0.8
923,855 - +1.2
923,920 + +0.4
923,986 + -0.0
923,986 + +0.2
923,998 + +0.3
924,321 - Psest_0853 0.47 +0.2
924,370 - Psest_0853 0.54 -1.1
924,396 + Psest_0853 0.57 -0.4
924,396 + Psest_0853 0.57 -0.8
924,396 + Psest_0853 0.57 +1.4
924,396 + Psest_0853 0.57 +0.4
924,396 + Psest_0853 0.57 +0.4
924,397 - Psest_0853 0.57 -0.4
924,397 - Psest_0853 0.57 +1.2
924,397 - Psest_0853 0.57 -1.1
924,397 - Psest_0853 0.57 +0.2
924,397 - Psest_0853 0.57 -0.7
924,686 + -0.4
924,687 - +0.2
924,687 - +0.0
924,727 + +0.2
924,728 - -1.4

Or see this region's nucleotide sequence