Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0843 and Psest_0844 overlap by 4 nucleotides Psest_0844 and Psest_0845 are separated by 16 nucleotides Psest_0845 and Psest_0846 overlap by 1 nucleotides
Psest_0843: Psest_0843 - hypothetical protein, at 913,228 to 914,604
_0843
Psest_0844: Psest_0844 - High-affinity Fe2+/Pb2+ permease, at 914,601 to 915,458
_0844
Psest_0845: Psest_0845 - hypothetical protein, at 915,475 to 915,813
_0845
Psest_0846: Psest_0846 - Uncharacterized protein probably involved in high-affinity Fe2+ transport, at 915,813 to 916,346
_0846
Position (kb) 914
915
916 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 913.608 kb on + strand, within Psest_0843 at 913.608 kb on + strand, within Psest_0843 at 913.609 kb on - strand, within Psest_0843 at 913.609 kb on - strand, within Psest_0843 at 913.610 kb on + strand, within Psest_0843 at 913.610 kb on + strand, within Psest_0843 at 913.610 kb on + strand, within Psest_0843 at 913.610 kb on + strand, within Psest_0843 at 913.610 kb on + strand, within Psest_0843 at 913.610 kb on + strand, within Psest_0843 at 913.610 kb on + strand, within Psest_0843 at 913.610 kb on + strand, within Psest_0843 at 913.610 kb on + strand, within Psest_0843 at 913.611 kb on - strand, within Psest_0843 at 913.611 kb on - strand, within Psest_0843 at 913.611 kb on - strand, within Psest_0843 at 913.611 kb on - strand, within Psest_0843 at 913.611 kb on - strand, within Psest_0843 at 913.611 kb on - strand, within Psest_0843 at 913.611 kb on - strand, within Psest_0843 at 913.611 kb on - strand, within Psest_0843 at 913.611 kb on - strand, within Psest_0843 at 913.897 kb on + strand, within Psest_0843 at 913.898 kb on - strand, within Psest_0843 at 914.048 kb on + strand, within Psest_0843 at 914.048 kb on + strand, within Psest_0843 at 914.049 kb on - strand, within Psest_0843 at 914.049 kb on - strand, within Psest_0843 at 914.049 kb on - strand, within Psest_0843 at 914.049 kb on - strand, within Psest_0843 at 914.049 kb on - strand, within Psest_0843 at 914.201 kb on + strand, within Psest_0843 at 914.201 kb on + strand, within Psest_0843 at 914.201 kb on + strand, within Psest_0843 at 914.201 kb on + strand, within Psest_0843 at 914.202 kb on - strand, within Psest_0843 at 914.202 kb on - strand, within Psest_0843 at 914.202 kb on - strand, within Psest_0843 at 914.207 kb on + strand, within Psest_0843 at 914.207 kb on + strand, within Psest_0843 at 914.207 kb on + strand, within Psest_0843 at 914.207 kb on + strand, within Psest_0843 at 914.207 kb on + strand, within Psest_0843 at 914.208 kb on - strand, within Psest_0843 at 914.229 kb on - strand, within Psest_0843 at 914.507 kb on + strand at 914.508 kb on - strand at 914.508 kb on - strand at 914.508 kb on - strand at 914.508 kb on - strand at 914.508 kb on - strand at 914.803 kb on + strand, within Psest_0844 at 914.803 kb on + strand, within Psest_0844 at 914.803 kb on + strand, within Psest_0844 at 914.803 kb on + strand, within Psest_0844 at 914.817 kb on + strand, within Psest_0844 at 914.818 kb on - strand, within Psest_0844 at 915.046 kb on + strand, within Psest_0844 at 915.047 kb on - strand, within Psest_0844 at 915.223 kb on - strand, within Psest_0844 at 915.288 kb on + strand, within Psest_0844 at 915.473 kb on + strand at 915.474 kb on - strand at 915.474 kb on - strand at 915.476 kb on + strand at 915.476 kb on + strand at 915.476 kb on + strand at 915.476 kb on + strand at 915.477 kb on - strand at 915.477 kb on - strand at 915.477 kb on - strand at 915.729 kb on - strand, within Psest_0845 at 915.857 kb on - strand at 915.955 kb on + strand, within Psest_0846 at 915.955 kb on + strand, within Psest_0846 at 915.956 kb on - strand, within Psest_0846 at 915.956 kb on - strand, within Psest_0846 at 915.967 kb on + strand, within Psest_0846 at 916.081 kb on + strand, within Psest_0846 at 916.082 kb on - strand, within Psest_0846 at 916.082 kb on - strand, within Psest_0846 at 916.455 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 913,608 + Psest_0843 0.28 -0.1 913,608 + Psest_0843 0.28 -0.7 913,609 - Psest_0843 0.28 -0.2 913,609 - Psest_0843 0.28 +1.0 913,610 + Psest_0843 0.28 -1.0 913,610 + Psest_0843 0.28 -0.9 913,610 + Psest_0843 0.28 -0.4 913,610 + Psest_0843 0.28 -0.7 913,610 + Psest_0843 0.28 +0.2 913,610 + Psest_0843 0.28 +1.0 913,610 + Psest_0843 0.28 +0.9 913,610 + Psest_0843 0.28 -0.0 913,610 + Psest_0843 0.28 -0.8 913,611 - Psest_0843 0.28 -1.4 913,611 - Psest_0843 0.28 -1.1 913,611 - Psest_0843 0.28 -1.1 913,611 - Psest_0843 0.28 -0.6 913,611 - Psest_0843 0.28 -1.1 913,611 - Psest_0843 0.28 -0.8 913,611 - Psest_0843 0.28 -1.3 913,611 - Psest_0843 0.28 -1.0 913,611 - Psest_0843 0.28 -0.3 913,897 + Psest_0843 0.49 -1.0 913,898 - Psest_0843 0.49 -0.9 914,048 + Psest_0843 0.60 -1.1 914,048 + Psest_0843 0.60 -0.1 914,049 - Psest_0843 0.60 -0.1 914,049 - Psest_0843 0.60 -0.6 914,049 - Psest_0843 0.60 -2.5 914,049 - Psest_0843 0.60 +0.2 914,049 - Psest_0843 0.60 -1.3 914,201 + Psest_0843 0.71 +0.3 914,201 + Psest_0843 0.71 -1.2 914,201 + Psest_0843 0.71 -0.7 914,201 + Psest_0843 0.71 -0.1 914,202 - Psest_0843 0.71 +0.8 914,202 - Psest_0843 0.71 -0.6 914,202 - Psest_0843 0.71 -0.0 914,207 + Psest_0843 0.71 -1.2 914,207 + Psest_0843 0.71 -0.8 914,207 + Psest_0843 0.71 -0.7 914,207 + Psest_0843 0.71 -0.3 914,207 + Psest_0843 0.71 -0.6 914,208 - Psest_0843 0.71 +1.5 914,229 - Psest_0843 0.73 -0.4 914,507 + -0.5 914,508 - -1.4 914,508 - -1.4 914,508 - -1.3 914,508 - -0.8 914,508 - -0.4 914,803 + Psest_0844 0.24 -1.0 914,803 + Psest_0844 0.24 -1.0 914,803 + Psest_0844 0.24 -0.2 914,803 + Psest_0844 0.24 -0.4 914,817 + Psest_0844 0.25 -0.4 914,818 - Psest_0844 0.25 -1.5 915,046 + Psest_0844 0.52 -0.5 915,047 - Psest_0844 0.52 +1.1 915,223 - Psest_0844 0.72 -1.1 915,288 + Psest_0844 0.80 -0.5 915,473 + -0.4 915,474 - -0.7 915,474 - +0.8 915,476 + -1.6 915,476 + -1.4 915,476 + -0.5 915,476 + +1.5 915,477 - -1.6 915,477 - -0.4 915,477 - +3.2 915,729 - Psest_0845 0.75 -0.3 915,857 - -0.0 915,955 + Psest_0846 0.27 +0.3 915,955 + Psest_0846 0.27 -0.7 915,956 - Psest_0846 0.27 -1.0 915,956 - Psest_0846 0.27 -0.2 915,967 + Psest_0846 0.29 -0.1 916,081 + Psest_0846 0.50 -1.1 916,082 - Psest_0846 0.50 -0.6 916,082 - Psest_0846 0.50 +0.1 916,455 + -0.9
Or see this region's nucleotide sequence