Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0835 and Psest_0836 are separated by 14 nucleotides Psest_0836 and Psest_0837 overlap by 7 nucleotides Psest_0837 and Psest_0838 are separated by 180 nucleotides Psest_0838 and Psest_0839 are separated by 96 nucleotides
Psest_0835: Psest_0835 - Collagenase and related proteases, at 906,277 to 907,272
_0835
Psest_0836: Psest_0836 - Collagenase and related proteases, at 907,287 to 908,177
_0836
Psest_0837: Psest_0837 - Putative lipid carrier protein, at 908,171 to 908,665
_0837
Psest_0838: Psest_0838 - Uncharacterized conserved protein, at 908,846 to 909,232
_0838
Psest_0839: Psest_0839 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 909,329 to 910,006
_0839
Position (kb) 908
909 Strain fitness (log2 ratio) -2
-1
0
1
2 at 907.317 kb on + strand at 907.317 kb on + strand at 907.317 kb on + strand at 907.318 kb on - strand at 907.383 kb on + strand, within Psest_0836 at 907.383 kb on + strand, within Psest_0836 at 907.384 kb on - strand, within Psest_0836 at 907.644 kb on + strand, within Psest_0836 at 907.644 kb on + strand, within Psest_0836 at 907.644 kb on + strand, within Psest_0836 at 907.645 kb on - strand, within Psest_0836 at 907.813 kb on - strand, within Psest_0836 at 907.813 kb on - strand, within Psest_0836 at 907.813 kb on - strand, within Psest_0836 at 908.056 kb on + strand, within Psest_0836 at 908.056 kb on + strand, within Psest_0836 at 908.056 kb on + strand, within Psest_0836 at 908.056 kb on + strand, within Psest_0836 at 908.056 kb on + strand, within Psest_0836 at 908.056 kb on + strand, within Psest_0836 at 908.057 kb on - strand, within Psest_0836 at 908.057 kb on - strand, within Psest_0836 at 908.057 kb on - strand, within Psest_0836 at 908.171 kb on - strand at 908.171 kb on - strand at 908.319 kb on + strand, within Psest_0837 at 908.320 kb on - strand, within Psest_0837 at 908.320 kb on - strand, within Psest_0837 at 908.764 kb on + strand at 908.764 kb on + strand at 908.764 kb on + strand at 908.764 kb on + strand at 908.764 kb on + strand at 908.764 kb on + strand at 908.764 kb on + strand at 908.764 kb on + strand at 908.765 kb on - strand at 908.765 kb on - strand at 908.765 kb on - strand at 908.765 kb on - strand at 908.765 kb on - strand at 908.765 kb on - strand at 908.765 kb on - strand at 908.765 kb on - strand at 908.765 kb on - strand at 908.765 kb on - strand at 908.842 kb on + strand at 908.842 kb on + strand at 908.842 kb on + strand at 908.842 kb on + strand at 908.842 kb on + strand at 908.842 kb on + strand at 908.843 kb on - strand at 908.843 kb on - strand at 908.843 kb on - strand at 908.843 kb on - strand at 908.843 kb on - strand at 908.843 kb on - strand at 908.843 kb on - strand at 909.202 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 907,317 + +0.4 907,317 + +0.9 907,317 + +0.2 907,318 - -0.7 907,383 + Psest_0836 0.11 +1.2 907,383 + Psest_0836 0.11 +0.6 907,384 - Psest_0836 0.11 -0.5 907,644 + Psest_0836 0.40 +0.1 907,644 + Psest_0836 0.40 +1.9 907,644 + Psest_0836 0.40 +0.8 907,645 - Psest_0836 0.40 -0.9 907,813 - Psest_0836 0.59 -0.1 907,813 - Psest_0836 0.59 +0.4 907,813 - Psest_0836 0.59 -0.4 908,056 + Psest_0836 0.86 +0.0 908,056 + Psest_0836 0.86 -0.5 908,056 + Psest_0836 0.86 +0.3 908,056 + Psest_0836 0.86 +0.4 908,056 + Psest_0836 0.86 -0.9 908,056 + Psest_0836 0.86 +0.4 908,057 - Psest_0836 0.86 +1.4 908,057 - Psest_0836 0.86 -0.2 908,057 - Psest_0836 0.86 +0.5 908,171 - -2.1 908,171 - -0.1 908,319 + Psest_0837 0.30 -1.0 908,320 - Psest_0837 0.30 -0.0 908,320 - Psest_0837 0.30 -0.5 908,764 + +0.6 908,764 + +0.3 908,764 + -0.5 908,764 + +0.8 908,764 + -1.0 908,764 + +0.1 908,764 + -0.2 908,764 + -0.3 908,765 - -0.1 908,765 - -0.0 908,765 - +0.9 908,765 - +0.8 908,765 - +0.9 908,765 - -1.8 908,765 - +0.2 908,765 - -0.4 908,765 - +0.6 908,765 - -0.2 908,842 + -0.3 908,842 + +0.4 908,842 + +0.9 908,842 + -0.2 908,842 + +0.9 908,842 + -0.4 908,843 - -0.6 908,843 - -0.4 908,843 - -0.4 908,843 - +0.1 908,843 - -0.8 908,843 - +0.1 908,843 - -0.0 909,202 - -0.7
Or see this region's nucleotide sequence