Experiment: m.b. Cholin acetate 76.57 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p42g5 and HP15_p42g6 are separated by 121 nucleotides HP15_p42g6 and HP15_p42g7 are separated by 40 nucleotides HP15_p42g7 and HP15_p42g8 overlap by 8 nucleotides HP15_p42g8 and HP15_p42g9 are separated by 106 nucleotides HP15_p42g9 and HP15_p42g10 are separated by 132 nucleotides
HP15_p42g5: HP15_p42g5 - conserved hypothetical protein, at 3,973 to 4,269
_p42g5
HP15_p42g6: HP15_p42g6 - antirestriction protein, at 4,391 to 4,825
_p42g6
HP15_p42g7: HP15_p42g7 - klcB-like protein, at 4,866 to 5,933
_p42g7
HP15_p42g8: HP15_p42g8 - transcriptional repressor korC-like protein, at 5,926 to 6,180
_p42g8
HP15_p42g9: HP15_p42g9 - kleC-like protein, at 6,287 to 6,568
_p42g9
HP15_p42g10: HP15_p42g10 - KleE protein, at 6,701 to 7,051
_p42g10
Position (kb) 4
5
6 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 3.926 kb on + strand at 4.058 kb on + strand, within HP15_p42g5 at 4.071 kb on + strand, within HP15_p42g5 at 4.079 kb on - strand, within HP15_p42g5 at 4.082 kb on + strand, within HP15_p42g5 at 4.114 kb on + strand, within HP15_p42g5 at 4.114 kb on + strand, within HP15_p42g5 at 4.122 kb on - strand, within HP15_p42g5 at 4.158 kb on + strand, within HP15_p42g5 at 4.166 kb on + strand, within HP15_p42g5 at 4.368 kb on + strand at 4.439 kb on + strand, within HP15_p42g6 at 4.497 kb on + strand, within HP15_p42g6 at 4.521 kb on - strand, within HP15_p42g6 at 4.540 kb on + strand, within HP15_p42g6 at 4.561 kb on + strand, within HP15_p42g6 at 4.563 kb on + strand, within HP15_p42g6 at 4.563 kb on + strand, within HP15_p42g6 at 4.563 kb on + strand, within HP15_p42g6 at 4.569 kb on - strand, within HP15_p42g6 at 4.569 kb on - strand, within HP15_p42g6 at 4.569 kb on - strand, within HP15_p42g6 at 4.569 kb on - strand, within HP15_p42g6 at 4.571 kb on - strand, within HP15_p42g6 at 4.571 kb on - strand, within HP15_p42g6 at 4.713 kb on - strand, within HP15_p42g6 at 4.718 kb on + strand, within HP15_p42g6 at 4.720 kb on - strand, within HP15_p42g6 at 4.723 kb on + strand, within HP15_p42g6 at 4.723 kb on + strand, within HP15_p42g6 at 4.726 kb on - strand, within HP15_p42g6 at 4.726 kb on - strand, within HP15_p42g6 at 4.772 kb on + strand, within HP15_p42g6 at 4.779 kb on + strand, within HP15_p42g6 at 4.779 kb on + strand, within HP15_p42g6 at 4.972 kb on + strand at 4.972 kb on + strand at 4.972 kb on + strand at 4.977 kb on + strand, within HP15_p42g7 at 4.980 kb on - strand, within HP15_p42g7 at 5.245 kb on + strand, within HP15_p42g7 at 5.322 kb on + strand, within HP15_p42g7 at 5.330 kb on - strand, within HP15_p42g7 at 5.330 kb on - strand, within HP15_p42g7 at 5.386 kb on - strand, within HP15_p42g7 at 5.464 kb on - strand, within HP15_p42g7 at 5.477 kb on - strand, within HP15_p42g7 at 5.478 kb on - strand, within HP15_p42g7 at 5.478 kb on - strand, within HP15_p42g7 at 5.495 kb on - strand, within HP15_p42g7 at 5.496 kb on + strand, within HP15_p42g7 at 5.516 kb on - strand, within HP15_p42g7 at 5.641 kb on - strand, within HP15_p42g7 at 5.641 kb on - strand, within HP15_p42g7 at 5.675 kb on + strand, within HP15_p42g7 at 5.683 kb on - strand, within HP15_p42g7 at 5.683 kb on - strand, within HP15_p42g7 at 5.683 kb on - strand, within HP15_p42g7 at 5.683 kb on - strand, within HP15_p42g7 at 5.683 kb on - strand, within HP15_p42g7 at 5.683 kb on - strand, within HP15_p42g7 at 5.683 kb on - strand, within HP15_p42g7 at 5.683 kb on - strand, within HP15_p42g7 at 5.732 kb on + strand, within HP15_p42g7 at 5.740 kb on - strand, within HP15_p42g7 at 5.768 kb on + strand, within HP15_p42g7 at 5.776 kb on + strand, within HP15_p42g7 at 5.784 kb on - strand, within HP15_p42g7 at 5.784 kb on - strand, within HP15_p42g7 at 5.805 kb on - strand, within HP15_p42g7 at 5.831 kb on - strand at 5.852 kb on - strand at 5.863 kb on - strand at 5.881 kb on + strand at 5.881 kb on - strand at 5.882 kb on - strand at 5.909 kb on - strand at 6.182 kb on - strand at 6.313 kb on - strand at 6.319 kb on - strand, within HP15_p42g9 at 6.442 kb on - strand, within HP15_p42g9 at 6.700 kb on - strand at 6.781 kb on + strand, within HP15_p42g10 at 6.880 kb on - strand, within HP15_p42g10
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 76.57 mM remove 3,926 + +0.3 4,058 + HP15_p42g5 0.29 +0.2 4,071 + HP15_p42g5 0.33 +0.3 4,079 - HP15_p42g5 0.36 +0.8 4,082 + HP15_p42g5 0.37 +0.6 4,114 + HP15_p42g5 0.47 -1.1 4,114 + HP15_p42g5 0.47 -1.1 4,122 - HP15_p42g5 0.50 -0.5 4,158 + HP15_p42g5 0.62 +0.2 4,166 + HP15_p42g5 0.65 +0.1 4,368 + -2.3 4,439 + HP15_p42g6 0.11 -1.8 4,497 + HP15_p42g6 0.24 -0.6 4,521 - HP15_p42g6 0.30 -0.1 4,540 + HP15_p42g6 0.34 -1.3 4,561 + HP15_p42g6 0.39 -3.1 4,563 + HP15_p42g6 0.40 -0.4 4,563 + HP15_p42g6 0.40 -1.2 4,563 + HP15_p42g6 0.40 -4.5 4,569 - HP15_p42g6 0.41 -0.2 4,569 - HP15_p42g6 0.41 -0.3 4,569 - HP15_p42g6 0.41 -0.5 4,569 - HP15_p42g6 0.41 -0.9 4,571 - HP15_p42g6 0.41 +0.7 4,571 - HP15_p42g6 0.41 +0.4 4,713 - HP15_p42g6 0.74 -0.1 4,718 + HP15_p42g6 0.75 -1.7 4,720 - HP15_p42g6 0.76 -0.7 4,723 + HP15_p42g6 0.76 -0.8 4,723 + HP15_p42g6 0.76 -2.6 4,726 - HP15_p42g6 0.77 -0.3 4,726 - HP15_p42g6 0.77 +0.7 4,772 + HP15_p42g6 0.88 -3.3 4,779 + HP15_p42g6 0.89 -2.6 4,779 + HP15_p42g6 0.89 +0.4 4,972 + -1.7 4,972 + -3.2 4,972 + -2.0 4,977 + HP15_p42g7 0.10 -1.3 4,980 - HP15_p42g7 0.11 -0.6 5,245 + HP15_p42g7 0.35 -2.6 5,322 + HP15_p42g7 0.43 -0.1 5,330 - HP15_p42g7 0.43 -0.6 5,330 - HP15_p42g7 0.43 -0.2 5,386 - HP15_p42g7 0.49 -0.3 5,464 - HP15_p42g7 0.56 -0.2 5,477 - HP15_p42g7 0.57 -0.6 5,478 - HP15_p42g7 0.57 -0.6 5,478 - HP15_p42g7 0.57 +0.8 5,495 - HP15_p42g7 0.59 -0.1 5,496 + HP15_p42g7 0.59 -2.2 5,516 - HP15_p42g7 0.61 -1.5 5,641 - HP15_p42g7 0.73 -0.8 5,641 - HP15_p42g7 0.73 -0.3 5,675 + HP15_p42g7 0.76 -3.0 5,683 - HP15_p42g7 0.76 -0.4 5,683 - HP15_p42g7 0.76 -0.1 5,683 - HP15_p42g7 0.76 -0.3 5,683 - HP15_p42g7 0.76 -1.3 5,683 - HP15_p42g7 0.76 -1.6 5,683 - HP15_p42g7 0.76 +0.2 5,683 - HP15_p42g7 0.76 +0.0 5,683 - HP15_p42g7 0.76 +0.6 5,732 + HP15_p42g7 0.81 -2.0 5,740 - HP15_p42g7 0.82 -0.5 5,768 + HP15_p42g7 0.84 -2.2 5,776 + HP15_p42g7 0.85 -1.6 5,784 - HP15_p42g7 0.86 -0.3 5,784 - HP15_p42g7 0.86 -0.7 5,805 - HP15_p42g7 0.88 -0.3 5,831 - -0.6 5,852 - -0.2 5,863 - +0.1 5,881 + -2.9 5,881 - -0.6 5,882 - -0.3 5,909 - -0.3 6,182 - +0.7 6,313 - -0.6 6,319 - HP15_p42g9 0.11 -0.1 6,442 - HP15_p42g9 0.55 +0.3 6,700 - -0.8 6,781 + HP15_p42g10 0.23 -1.2 6,880 - HP15_p42g10 0.51 -0.5
Or see this region's nucleotide sequence