Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4260

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4259 and Psest_4260 overlap by 4 nucleotidesPsest_4260 and Psest_4261 are separated by 1 nucleotides Psest_4259: Psest_4259 - Multidrug resistance efflux pump, at 4,446,537 to 4,447,613 _4259 Psest_4260: Psest_4260 - ABC-type multidrug transport system, ATPase component, at 4,447,610 to 4,450,351 _4260 Psest_4261: Psest_4261 - ABC-type multidrug transport system, permease component, at 4,450,353 to 4,451,480 _4261 Position (kb) 4447 4448 4449 4450 4451Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4447.290 kb on + strand, within Psest_4259at 4447.290 kb on + strand, within Psest_4259at 4447.290 kb on + strand, within Psest_4259at 4447.290 kb on + strand, within Psest_4259at 4447.290 kb on + strand, within Psest_4259at 4447.290 kb on + strand, within Psest_4259at 4447.290 kb on + strand, within Psest_4259at 4447.291 kb on - strand, within Psest_4259at 4447.291 kb on - strand, within Psest_4259at 4447.291 kb on - strand, within Psest_4259at 4447.291 kb on - strand, within Psest_4259at 4447.291 kb on - strand, within Psest_4259at 4447.377 kb on + strand, within Psest_4259at 4447.378 kb on - strand, within Psest_4259at 4447.378 kb on - strand, within Psest_4259at 4447.378 kb on - strand, within Psest_4259at 4447.401 kb on + strand, within Psest_4259at 4447.401 kb on + strand, within Psest_4259at 4447.401 kb on + strand, within Psest_4259at 4447.401 kb on + strand, within Psest_4259at 4447.401 kb on + strand, within Psest_4259at 4447.401 kb on + strand, within Psest_4259at 4447.401 kb on + strand, within Psest_4259at 4447.401 kb on + strand, within Psest_4259at 4447.401 kb on + strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.402 kb on - strand, within Psest_4259at 4447.551 kb on + strandat 4447.868 kb on + strandat 4447.869 kb on - strandat 4447.869 kb on - strandat 4448.219 kb on + strand, within Psest_4260at 4448.219 kb on + strand, within Psest_4260at 4448.219 kb on + strand, within Psest_4260at 4448.219 kb on + strand, within Psest_4260at 4448.219 kb on + strand, within Psest_4260at 4448.220 kb on - strand, within Psest_4260at 4448.220 kb on - strand, within Psest_4260at 4448.220 kb on - strand, within Psest_4260at 4448.220 kb on - strand, within Psest_4260at 4448.220 kb on - strand, within Psest_4260at 4448.220 kb on - strand, within Psest_4260at 4448.220 kb on - strand, within Psest_4260at 4448.220 kb on - strand, within Psest_4260at 4448.221 kb on + strand, within Psest_4260at 4448.222 kb on - strand, within Psest_4260at 4448.222 kb on - strandat 4448.222 kb on - strand, within Psest_4260at 4448.222 kb on - strand, within Psest_4260at 4448.274 kb on + strand, within Psest_4260at 4448.274 kb on + strand, within Psest_4260at 4448.274 kb on + strand, within Psest_4260at 4448.275 kb on - strand, within Psest_4260at 4448.275 kb on - strand, within Psest_4260at 4448.275 kb on - strand, within Psest_4260at 4448.275 kb on - strand, within Psest_4260at 4448.275 kb on - strand, within Psest_4260at 4448.275 kb on - strand, within Psest_4260at 4448.275 kb on - strand, within Psest_4260at 4448.506 kb on - strand, within Psest_4260at 4448.506 kb on - strand, within Psest_4260at 4448.506 kb on - strand, within Psest_4260at 4448.651 kb on + strand, within Psest_4260at 4448.651 kb on + strand, within Psest_4260at 4448.651 kb on + strand, within Psest_4260at 4448.652 kb on - strand, within Psest_4260at 4448.652 kb on - strand, within Psest_4260at 4448.652 kb on - strand, within Psest_4260at 4448.675 kb on + strand, within Psest_4260at 4448.676 kb on - strand, within Psest_4260at 4449.254 kb on + strand, within Psest_4260at 4449.255 kb on - strand, within Psest_4260at 4449.255 kb on - strand, within Psest_4260at 4449.255 kb on - strand, within Psest_4260at 4449.380 kb on + strand, within Psest_4260at 4449.380 kb on + strand, within Psest_4260at 4449.380 kb on + strand, within Psest_4260at 4449.381 kb on - strand, within Psest_4260at 4449.381 kb on - strand, within Psest_4260at 4449.422 kb on + strand, within Psest_4260at 4449.422 kb on + strand, within Psest_4260at 4449.422 kb on + strand, within Psest_4260at 4449.423 kb on - strand, within Psest_4260at 4449.423 kb on - strand, within Psest_4260at 4449.423 kb on - strand, within Psest_4260at 4449.423 kb on - strand, within Psest_4260at 4449.423 kb on - strand, within Psest_4260at 4449.423 kb on - strand, within Psest_4260at 4449.423 kb on - strand, within Psest_4260at 4449.582 kb on + strand, within Psest_4260at 4449.582 kb on + strand, within Psest_4260at 4449.636 kb on - strand, within Psest_4260at 4449.659 kb on + strand, within Psest_4260at 4449.659 kb on + strand, within Psest_4260at 4449.659 kb on + strand, within Psest_4260at 4449.659 kb on + strand, within Psest_4260at 4449.659 kb on + strand, within Psest_4260at 4449.659 kb on + strand, within Psest_4260at 4449.659 kb on + strand, within Psest_4260at 4449.660 kb on - strand, within Psest_4260at 4449.660 kb on - strand, within Psest_4260at 4449.660 kb on - strand, within Psest_4260at 4449.660 kb on - strand, within Psest_4260at 4449.660 kb on - strand, within Psest_4260at 4449.660 kb on - strand, within Psest_4260at 4449.660 kb on - strand, within Psest_4260at 4449.660 kb on - strand, within Psest_4260at 4449.660 kb on - strandat 4449.735 kb on - strand, within Psest_4260at 4449.866 kb on + strand, within Psest_4260at 4449.866 kb on + strand, within Psest_4260at 4449.866 kb on + strand, within Psest_4260at 4449.866 kb on + strand, within Psest_4260at 4449.866 kb on + strand, within Psest_4260at 4449.866 kb on + strand, within Psest_4260at 4449.866 kb on + strand, within Psest_4260at 4449.866 kb on + strand, within Psest_4260at 4449.867 kb on - strand, within Psest_4260at 4449.867 kb on - strand, within Psest_4260at 4449.867 kb on - strand, within Psest_4260at 4449.867 kb on - strand, within Psest_4260at 4449.867 kb on - strand, within Psest_4260at 4449.867 kb on - strand, within Psest_4260at 4449.917 kb on + strand, within Psest_4260at 4449.917 kb on + strand, within Psest_4260at 4449.917 kb on + strand, within Psest_4260at 4449.918 kb on - strand, within Psest_4260at 4449.918 kb on - strand, within Psest_4260at 4449.918 kb on - strand, within Psest_4260at 4449.918 kb on - strand, within Psest_4260at 4450.028 kb on + strand, within Psest_4260at 4450.028 kb on + strand, within Psest_4260at 4450.028 kb on + strand, within Psest_4260at 4450.028 kb on + strand, within Psest_4260at 4450.029 kb on - strand, within Psest_4260at 4450.029 kb on - strand, within Psest_4260at 4450.029 kb on - strand, within Psest_4260at 4450.268 kb on + strandat 4450.269 kb on - strandat 4450.274 kb on + strandat 4450.274 kb on + strandat 4450.275 kb on - strandat 4450.275 kb on - strandat 4450.452 kb on + strandat 4450.452 kb on + strandat 4450.452 kb on + strandat 4450.452 kb on + strandat 4450.453 kb on - strandat 4450.453 kb on - strandat 4450.453 kb on - strandat 4450.453 kb on - strandat 4450.453 kb on - strandat 4450.453 kb on - strandat 4450.473 kb on + strand, within Psest_4261at 4450.473 kb on + strand, within Psest_4261at 4450.474 kb on - strand, within Psest_4261at 4450.474 kb on - strand, within Psest_4261at 4450.474 kb on - strand, within Psest_4261at 4450.474 kb on - strand, within Psest_4261at 4450.474 kb on - strand, within Psest_4261at 4450.474 kb on - strand, within Psest_4261at 4450.474 kb on - strand, within Psest_4261at 4450.584 kb on + strand, within Psest_4261at 4450.585 kb on - strand, within Psest_4261at 4450.647 kb on + strand, within Psest_4261at 4450.647 kb on + strand, within Psest_4261at 4450.648 kb on - strand, within Psest_4261at 4450.648 kb on - strand, within Psest_4261at 4450.648 kb on - strand, within Psest_4261at 4450.648 kb on - strand, within Psest_4261at 4450.648 kb on - strand, within Psest_4261at 4450.648 kb on - strand, within Psest_4261at 4450.648 kb on - strand, within Psest_4261at 4450.648 kb on - strand, within Psest_4261at 4451.056 kb on + strand, within Psest_4261

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,447,290 + Psest_4259 0.70 +0.2
4,447,290 + Psest_4259 0.70 +0.4
4,447,290 + Psest_4259 0.70 +1.7
4,447,290 + Psest_4259 0.70 +1.7
4,447,290 + Psest_4259 0.70 -0.1
4,447,290 + Psest_4259 0.70 +0.4
4,447,290 + Psest_4259 0.70 +0.7
4,447,291 - Psest_4259 0.70 +0.8
4,447,291 - Psest_4259 0.70 +1.1
4,447,291 - Psest_4259 0.70 +1.1
4,447,291 - Psest_4259 0.70 -0.1
4,447,291 - Psest_4259 0.70 +0.1
4,447,377 + Psest_4259 0.78 +0.9
4,447,378 - Psest_4259 0.78 -0.1
4,447,378 - Psest_4259 0.78 +0.4
4,447,378 - Psest_4259 0.78 +1.6
4,447,401 + Psest_4259 0.80 +1.0
4,447,401 + Psest_4259 0.80 -0.5
4,447,401 + Psest_4259 0.80 +1.5
4,447,401 + Psest_4259 0.80 -0.5
4,447,401 + Psest_4259 0.80 +0.1
4,447,401 + Psest_4259 0.80 +1.1
4,447,401 + Psest_4259 0.80 +0.9
4,447,401 + Psest_4259 0.80 +1.1
4,447,401 + Psest_4259 0.80 +2.1
4,447,402 - Psest_4259 0.80 +0.7
4,447,402 - Psest_4259 0.80 +0.1
4,447,402 - Psest_4259 0.80 +0.5
4,447,402 - Psest_4259 0.80 +0.7
4,447,402 - Psest_4259 0.80 +1.1
4,447,402 - Psest_4259 0.80 +2.1
4,447,402 - Psest_4259 0.80 +1.1
4,447,402 - Psest_4259 0.80 +1.1
4,447,402 - Psest_4259 0.80 +0.4
4,447,402 - Psest_4259 0.80 +0.5
4,447,402 - Psest_4259 0.80 +1.3
4,447,402 - Psest_4259 0.80 -0.5
4,447,402 - Psest_4259 0.80 +1.1
4,447,402 - Psest_4259 0.80 +2.1
4,447,402 - Psest_4259 0.80 -1.2
4,447,402 - Psest_4259 0.80 +0.2
4,447,402 - Psest_4259 0.80 -0.2
4,447,551 + -0.1
4,447,868 + -0.7
4,447,869 - +0.5
4,447,869 - +1.2
4,448,219 + Psest_4260 0.22 +0.4
4,448,219 + Psest_4260 0.22 +1.1
4,448,219 + Psest_4260 0.22 +0.3
4,448,219 + Psest_4260 0.22 +0.6
4,448,219 + Psest_4260 0.22 +2.1
4,448,220 - Psest_4260 0.22 +1.1
4,448,220 - Psest_4260 0.22 +1.1
4,448,220 - Psest_4260 0.22 -0.8
4,448,220 - Psest_4260 0.22 -0.1
4,448,220 - Psest_4260 0.22 -0.2
4,448,220 - Psest_4260 0.22 -0.5
4,448,220 - Psest_4260 0.22 +1.4
4,448,220 - Psest_4260 0.22 +0.1
4,448,221 + Psest_4260 0.22 +0.5
4,448,222 - Psest_4260 0.22 +0.1
4,448,222 - +1.1
4,448,222 - Psest_4260 0.22 +0.7
4,448,222 - Psest_4260 0.22 +1.1
4,448,274 + Psest_4260 0.24 +0.1
4,448,274 + Psest_4260 0.24 +0.1
4,448,274 + Psest_4260 0.24 +1.0
4,448,275 - Psest_4260 0.24 +0.7
4,448,275 - Psest_4260 0.24 +1.1
4,448,275 - Psest_4260 0.24 -0.5
4,448,275 - Psest_4260 0.24 +0.3
4,448,275 - Psest_4260 0.24 +1.1
4,448,275 - Psest_4260 0.24 +0.5
4,448,275 - Psest_4260 0.24 -1.2
4,448,506 - Psest_4260 0.33 +0.1
4,448,506 - Psest_4260 0.33 -1.9
4,448,506 - Psest_4260 0.33 +0.4
4,448,651 + Psest_4260 0.38 +1.1
4,448,651 + Psest_4260 0.38 +1.1
4,448,651 + Psest_4260 0.38 -0.9
4,448,652 - Psest_4260 0.38 -0.7
4,448,652 - Psest_4260 0.38 +0.8
4,448,652 - Psest_4260 0.38 +1.0
4,448,675 + Psest_4260 0.39 -0.5
4,448,676 - Psest_4260 0.39 +0.6
4,449,254 + Psest_4260 0.60 +2.1
4,449,255 - Psest_4260 0.60 +0.3
4,449,255 - Psest_4260 0.60 +2.1
4,449,255 - Psest_4260 0.60 +0.1
4,449,380 + Psest_4260 0.65 -0.9
4,449,380 + Psest_4260 0.65 -0.4
4,449,380 + Psest_4260 0.65 -0.6
4,449,381 - Psest_4260 0.65 +2.7
4,449,381 - Psest_4260 0.65 +2.8
4,449,422 + Psest_4260 0.66 -0.3
4,449,422 + Psest_4260 0.66 +0.1
4,449,422 + Psest_4260 0.66 -1.0
4,449,423 - Psest_4260 0.66 +0.5
4,449,423 - Psest_4260 0.66 +0.9
4,449,423 - Psest_4260 0.66 -0.9
4,449,423 - Psest_4260 0.66 +2.7
4,449,423 - Psest_4260 0.66 +1.1
4,449,423 - Psest_4260 0.66 +0.6
4,449,423 - Psest_4260 0.66 +0.8
4,449,582 + Psest_4260 0.72 +0.7
4,449,582 + Psest_4260 0.72 +0.5
4,449,636 - Psest_4260 0.74 -0.3
4,449,659 + Psest_4260 0.75 +0.3
4,449,659 + Psest_4260 0.75 +0.3
4,449,659 + Psest_4260 0.75 +1.5
4,449,659 + Psest_4260 0.75 -0.1
4,449,659 + Psest_4260 0.75 +0.4
4,449,659 + Psest_4260 0.75 +0.5
4,449,659 + Psest_4260 0.75 -0.8
4,449,660 - Psest_4260 0.75 +1.3
4,449,660 - Psest_4260 0.75 +0.3
4,449,660 - Psest_4260 0.75 +2.1
4,449,660 - Psest_4260 0.75 -0.9
4,449,660 - Psest_4260 0.75 +2.7
4,449,660 - Psest_4260 0.75 +1.1
4,449,660 - Psest_4260 0.75 +1.5
4,449,660 - Psest_4260 0.75 +0.7
4,449,660 - +1.1
4,449,735 - Psest_4260 0.77 +0.4
4,449,866 + Psest_4260 0.82 -0.8
4,449,866 + Psest_4260 0.82 -0.7
4,449,866 + Psest_4260 0.82 +1.7
4,449,866 + Psest_4260 0.82 -0.5
4,449,866 + Psest_4260 0.82 +0.1
4,449,866 + Psest_4260 0.82 +0.1
4,449,866 + Psest_4260 0.82 +0.1
4,449,866 + Psest_4260 0.82 -0.1
4,449,867 - Psest_4260 0.82 +2.1
4,449,867 - Psest_4260 0.82 +1.7
4,449,867 - Psest_4260 0.82 -0.1
4,449,867 - Psest_4260 0.82 -0.2
4,449,867 - Psest_4260 0.82 -1.3
4,449,867 - Psest_4260 0.82 +0.7
4,449,917 + Psest_4260 0.84 +0.6
4,449,917 + Psest_4260 0.84 +0.4
4,449,917 + Psest_4260 0.84 +0.3
4,449,918 - Psest_4260 0.84 -0.3
4,449,918 - Psest_4260 0.84 -0.9
4,449,918 - Psest_4260 0.84 -1.2
4,449,918 - Psest_4260 0.84 +1.1
4,450,028 + Psest_4260 0.88 -0.3
4,450,028 + Psest_4260 0.88 -0.5
4,450,028 + Psest_4260 0.88 +1.1
4,450,028 + Psest_4260 0.88 -0.1
4,450,029 - Psest_4260 0.88 +0.5
4,450,029 - Psest_4260 0.88 -0.1
4,450,029 - Psest_4260 0.88 +0.3
4,450,268 + +1.1
4,450,269 - +0.5
4,450,274 + +0.1
4,450,274 + -0.7
4,450,275 - +0.2
4,450,275 - +2.1
4,450,452 + +0.8
4,450,452 + +1.1
4,450,452 + -0.2
4,450,452 + +1.1
4,450,453 - +0.1
4,450,453 - +0.3
4,450,453 - +0.1
4,450,453 - +0.5
4,450,453 - +0.1
4,450,453 - +1.1
4,450,473 + Psest_4261 0.11 +0.6
4,450,473 + Psest_4261 0.11 -1.1
4,450,474 - Psest_4261 0.11 -0.2
4,450,474 - Psest_4261 0.11 +1.1
4,450,474 - Psest_4261 0.11 -0.2
4,450,474 - Psest_4261 0.11 -0.2
4,450,474 - Psest_4261 0.11 +0.4
4,450,474 - Psest_4261 0.11 -0.2
4,450,474 - Psest_4261 0.11 +2.1
4,450,584 + Psest_4261 0.20 -0.4
4,450,585 - Psest_4261 0.21 +0.1
4,450,647 + Psest_4261 0.26 -0.2
4,450,647 + Psest_4261 0.26 -0.0
4,450,648 - Psest_4261 0.26 -0.2
4,450,648 - Psest_4261 0.26 +0.5
4,450,648 - Psest_4261 0.26 +0.3
4,450,648 - Psest_4261 0.26 +3.1
4,450,648 - Psest_4261 0.26 +0.4
4,450,648 - Psest_4261 0.26 -0.4
4,450,648 - Psest_4261 0.26 -0.7
4,450,648 - Psest_4261 0.26 -0.4
4,451,056 + Psest_4261 0.62 -0.7

Or see this region's nucleotide sequence