Strain Fitness in Marinobacter adhaerens HP15 around HP15_3904

Experiment: m.b. Cholin acetate 76.57 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3902 and HP15_3903 are separated by 9 nucleotidesHP15_3903 and HP15_3904 overlap by 1 nucleotidesHP15_3904 and HP15_3905 are separated by 188 nucleotides HP15_3902: HP15_3902 - hypothetical protein, at 4,132,663 to 4,132,806 _3902 HP15_3903: HP15_3903 - methionine import ATP-binding protein MetN 2, at 4,132,816 to 4,133,748 _3903 HP15_3904: HP15_3904 - binding-protein-dependent transport systems inner membrane component, at 4,133,748 to 4,134,413 _3904 HP15_3905: HP15_3905 - lipoprotein, YaeC family, at 4,134,602 to 4,135,384 _3905 Position (kb) 4133 4134 4135Strain fitness (log2 ratio) -1 0 1at 4132.919 kb on + strand, within HP15_3903at 4132.963 kb on + strand, within HP15_3903at 4133.010 kb on + strand, within HP15_3903at 4133.017 kb on - strand, within HP15_3903at 4133.400 kb on + strand, within HP15_3903at 4133.409 kb on - strand, within HP15_3903at 4133.480 kb on + strand, within HP15_3903at 4133.514 kb on - strand, within HP15_3903at 4133.544 kb on - strand, within HP15_3903at 4133.569 kb on - strand, within HP15_3903at 4133.637 kb on + strand, within HP15_3903at 4133.687 kb on + strandat 4133.717 kb on - strandat 4133.737 kb on + strandat 4133.745 kb on - strandat 4133.757 kb on + strandat 4133.800 kb on + strandat 4133.805 kb on + strandat 4133.808 kb on - strandat 4133.827 kb on - strand, within HP15_3904at 4133.855 kb on + strand, within HP15_3904at 4133.995 kb on + strand, within HP15_3904at 4134.068 kb on - strand, within HP15_3904at 4134.131 kb on + strand, within HP15_3904at 4134.145 kb on + strand, within HP15_3904at 4134.326 kb on + strand, within HP15_3904at 4134.841 kb on + strand, within HP15_3905at 4134.886 kb on - strandat 4134.910 kb on + strand, within HP15_3905at 4134.986 kb on + strand, within HP15_3905at 4135.081 kb on - strand, within HP15_3905at 4135.137 kb on + strand, within HP15_3905at 4135.158 kb on + strand, within HP15_3905at 4135.197 kb on + strand, within HP15_3905at 4135.197 kb on + strand, within HP15_3905at 4135.204 kb on - strand, within HP15_3905at 4135.247 kb on + strand, within HP15_3905at 4135.362 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 76.57 mM
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4,132,919 + HP15_3903 0.11 +1.0
4,132,963 + HP15_3903 0.16 -0.5
4,133,010 + HP15_3903 0.21 -0.6
4,133,017 - HP15_3903 0.22 -1.2
4,133,400 + HP15_3903 0.63 -0.7
4,133,409 - HP15_3903 0.64 +0.2
4,133,480 + HP15_3903 0.71 +0.7
4,133,514 - HP15_3903 0.75 -0.7
4,133,544 - HP15_3903 0.78 -0.6
4,133,569 - HP15_3903 0.81 -1.0
4,133,637 + HP15_3903 0.88 +0.2
4,133,687 + -0.8
4,133,717 - -1.0
4,133,737 + +0.9
4,133,745 - -0.5
4,133,757 + -1.3
4,133,800 + -0.5
4,133,805 + -0.1
4,133,808 - -0.6
4,133,827 - HP15_3904 0.12 -0.2
4,133,855 + HP15_3904 0.16 -0.8
4,133,995 + HP15_3904 0.37 -1.5
4,134,068 - HP15_3904 0.48 -0.5
4,134,131 + HP15_3904 0.58 +1.3
4,134,145 + HP15_3904 0.60 -0.2
4,134,326 + HP15_3904 0.87 -1.0
4,134,841 + HP15_3905 0.31 +0.0
4,134,886 - +1.2
4,134,910 + HP15_3905 0.39 -1.0
4,134,986 + HP15_3905 0.49 -0.6
4,135,081 - HP15_3905 0.61 -0.1
4,135,137 + HP15_3905 0.68 -1.0
4,135,158 + HP15_3905 0.71 -0.5
4,135,197 + HP15_3905 0.76 -0.5
4,135,197 + HP15_3905 0.76 -0.9
4,135,204 - HP15_3905 0.77 -0.6
4,135,247 + HP15_3905 0.82 -0.8
4,135,362 - +0.1

Or see this region's nucleotide sequence