Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0381

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0380 and Psest_0381 are separated by 49 nucleotidesPsest_0381 and Psest_0382 overlap by 4 nucleotides Psest_0380: Psest_0380 - TonB-dependent siderophore receptor, at 408,821 to 410,944 _0380 Psest_0381: Psest_0381 - hypothetical protein, at 410,994 to 411,290 _0381 Psest_0382: Psest_0382 - Uncharacterized iron-regulated membrane protein, at 411,287 to 412,813 _0382 Position (kb) 410 411 412Strain fitness (log2 ratio) -2 -1 0 1 2 3at 410.045 kb on + strand, within Psest_0380at 410.129 kb on + strand, within Psest_0380at 410.129 kb on + strand, within Psest_0380at 410.129 kb on + strand, within Psest_0380at 410.129 kb on + strand, within Psest_0380at 410.129 kb on + strand, within Psest_0380at 410.129 kb on + strand, within Psest_0380at 410.130 kb on - strand, within Psest_0380at 410.130 kb on - strand, within Psest_0380at 410.130 kb on - strand, within Psest_0380at 410.130 kb on - strand, within Psest_0380at 410.261 kb on + strand, within Psest_0380at 410.261 kb on + strand, within Psest_0380at 410.261 kb on + strand, within Psest_0380at 410.261 kb on + strand, within Psest_0380at 410.262 kb on - strand, within Psest_0380at 410.262 kb on - strand, within Psest_0380at 410.288 kb on + strand, within Psest_0380at 410.288 kb on + strand, within Psest_0380at 410.288 kb on + strand, within Psest_0380at 410.288 kb on + strand, within Psest_0380at 410.288 kb on + strand, within Psest_0380at 410.289 kb on - strand, within Psest_0380at 410.289 kb on - strand, within Psest_0380at 410.289 kb on - strand, within Psest_0380at 410.289 kb on - strand, within Psest_0380at 410.289 kb on - strand, within Psest_0380at 410.289 kb on - strand, within Psest_0380at 410.297 kb on + strand, within Psest_0380at 410.297 kb on + strand, within Psest_0380at 410.297 kb on + strand, within Psest_0380at 410.297 kb on + strand, within Psest_0380at 410.298 kb on - strand, within Psest_0380at 410.351 kb on + strand, within Psest_0380at 410.351 kb on + strand, within Psest_0380at 410.351 kb on + strand, within Psest_0380at 410.351 kb on + strand, within Psest_0380at 410.351 kb on + strand, within Psest_0380at 410.351 kb on + strand, within Psest_0380at 410.351 kb on + strand, within Psest_0380at 410.351 kb on + strand, within Psest_0380at 410.352 kb on - strand, within Psest_0380at 410.352 kb on - strand, within Psest_0380at 410.393 kb on + strand, within Psest_0380at 410.394 kb on - strand, within Psest_0380at 410.394 kb on - strand, within Psest_0380at 410.576 kb on + strand, within Psest_0380at 410.576 kb on + strand, within Psest_0380at 410.576 kb on + strand, within Psest_0380at 410.576 kb on + strand, within Psest_0380at 410.576 kb on + strand, within Psest_0380at 410.576 kb on + strand, within Psest_0380at 410.576 kb on + strand, within Psest_0380at 410.576 kb on + strand, within Psest_0380at 410.576 kb on + strand, within Psest_0380at 410.576 kb on + strand, within Psest_0380at 410.576 kb on + strand, within Psest_0380at 410.576 kb on + strand, within Psest_0380at 410.577 kb on - strand, within Psest_0380at 410.577 kb on - strand, within Psest_0380at 410.577 kb on - strand, within Psest_0380at 410.577 kb on - strand, within Psest_0380at 410.577 kb on - strand, within Psest_0380at 410.577 kb on - strand, within Psest_0380at 410.577 kb on - strand, within Psest_0380at 410.577 kb on - strand, within Psest_0380at 410.577 kb on - strand, within Psest_0380at 410.582 kb on + strand, within Psest_0380at 410.582 kb on + strand, within Psest_0380at 410.582 kb on + strand, within Psest_0380at 410.582 kb on + strand, within Psest_0380at 410.583 kb on - strand, within Psest_0380at 410.583 kb on - strand, within Psest_0380at 410.583 kb on - strand, within Psest_0380at 410.583 kb on - strand, within Psest_0380at 410.730 kb on - strand, within Psest_0380at 410.730 kb on - strand, within Psest_0380at 410.730 kb on - strand, within Psest_0380at 410.861 kb on + strandat 410.861 kb on + strandat 410.861 kb on + strandat 410.861 kb on + strandat 410.862 kb on - strandat 410.862 kb on - strandat 410.862 kb on - strandat 410.862 kb on - strandat 410.864 kb on + strandat 410.864 kb on + strandat 410.864 kb on + strandat 410.864 kb on + strandat 410.864 kb on + strandat 410.865 kb on - strandat 410.865 kb on - strandat 410.865 kb on - strandat 410.865 kb on - strandat 410.865 kb on - strandat 410.865 kb on - strandat 410.865 kb on - strandat 410.865 kb on - strandat 410.865 kb on - strandat 410.865 kb on - strandat 410.865 kb on - strandat 410.865 kb on - strandat 410.865 kb on - strandat 410.933 kb on + strandat 410.933 kb on + strandat 410.933 kb on + strandat 410.934 kb on - strandat 410.934 kb on - strandat 411.008 kb on - strandat 411.008 kb on - strandat 411.008 kb on - strandat 411.008 kb on - strandat 411.008 kb on - strandat 411.008 kb on - strandat 411.102 kb on + strand, within Psest_0381at 411.103 kb on - strand, within Psest_0381at 411.103 kb on - strand, within Psest_0381at 411.180 kb on + strand, within Psest_0381at 411.180 kb on + strand, within Psest_0381at 411.180 kb on + strand, within Psest_0381at 411.180 kb on + strandat 411.180 kb on + strand, within Psest_0381at 411.180 kb on + strand, within Psest_0381at 411.180 kb on + strand, within Psest_0381at 411.180 kb on + strand, within Psest_0381at 411.180 kb on + strand, within Psest_0381at 411.180 kb on + strand, within Psest_0381at 411.180 kb on + strand, within Psest_0381at 411.180 kb on + strand, within Psest_0381at 411.180 kb on + strand, within Psest_0381at 411.181 kb on - strand, within Psest_0381at 411.181 kb on - strand, within Psest_0381at 411.181 kb on - strand, within Psest_0381at 411.181 kb on - strand, within Psest_0381at 411.181 kb on - strand, within Psest_0381at 411.181 kb on - strand, within Psest_0381at 411.181 kb on - strand, within Psest_0381at 411.181 kb on - strand, within Psest_0381at 411.665 kb on + strand, within Psest_0382at 411.665 kb on + strand, within Psest_0382at 411.665 kb on + strand, within Psest_0382at 411.665 kb on + strand, within Psest_0382at 411.665 kb on + strand, within Psest_0382at 411.665 kb on + strand, within Psest_0382at 411.665 kb on + strand, within Psest_0382at 411.665 kb on + strand, within Psest_0382at 411.666 kb on - strand, within Psest_0382at 411.666 kb on - strand, within Psest_0382at 411.666 kb on - strand, within Psest_0382at 411.666 kb on - strand, within Psest_0382at 411.666 kb on - strand, within Psest_0382at 411.695 kb on + strand, within Psest_0382at 411.695 kb on + strand, within Psest_0382at 411.695 kb on + strand, within Psest_0382at 411.695 kb on + strand, within Psest_0382at 411.695 kb on + strand, within Psest_0382at 411.695 kb on + strand, within Psest_0382at 411.695 kb on + strand, within Psest_0382at 411.695 kb on + strand, within Psest_0382at 411.695 kb on + strand, within Psest_0382at 411.695 kb on + strand, within Psest_0382at 411.695 kb on + strand, within Psest_0382at 411.695 kb on + strand, within Psest_0382at 411.695 kb on + strand, within Psest_0382at 411.695 kb on + strand, within Psest_0382at 411.695 kb on + strand, within Psest_0382at 411.695 kb on + strand, within Psest_0382at 411.695 kb on + strand, within Psest_0382at 411.695 kb on + strand, within Psest_0382at 411.695 kb on + strand, within Psest_0382at 411.695 kb on + strand, within Psest_0382at 411.695 kb on + strand, within Psest_0382at 411.695 kb on + strand, within Psest_0382at 411.695 kb on + strand, within Psest_0382at 411.695 kb on + strand, within Psest_0382at 411.695 kb on + strand, within Psest_0382at 411.695 kb on + strand, within Psest_0382at 411.695 kb on + strand, within Psest_0382at 411.695 kb on + strand, within Psest_0382at 411.696 kb on - strand, within Psest_0382at 411.696 kb on - strand, within Psest_0382at 411.696 kb on - strand, within Psest_0382at 411.696 kb on - strand, within Psest_0382at 411.696 kb on - strand, within Psest_0382at 411.696 kb on - strand, within Psest_0382at 411.696 kb on - strand, within Psest_0382at 411.696 kb on - strand, within Psest_0382at 411.696 kb on - strand, within Psest_0382at 411.696 kb on - strand, within Psest_0382at 411.696 kb on - strand, within Psest_0382at 411.696 kb on - strand, within Psest_0382at 411.696 kb on - strand, within Psest_0382at 411.696 kb on - strand, within Psest_0382at 411.696 kb on - strand, within Psest_0382at 411.905 kb on + strand, within Psest_0382at 411.905 kb on + strand, within Psest_0382at 411.905 kb on + strand, within Psest_0382at 411.905 kb on + strand, within Psest_0382at 411.905 kb on + strand, within Psest_0382at 411.905 kb on + strandat 411.906 kb on - strand, within Psest_0382at 411.906 kb on - strand, within Psest_0382at 411.906 kb on - strand, within Psest_0382at 411.906 kb on - strand, within Psest_0382at 411.906 kb on - strand, within Psest_0382at 411.906 kb on - strand, within Psest_0382at 411.906 kb on - strand, within Psest_0382at 411.906 kb on - strand, within Psest_0382at 411.906 kb on - strand, within Psest_0382at 411.906 kb on - strand, within Psest_0382at 411.906 kb on - strand, within Psest_0382at 411.906 kb on - strand, within Psest_0382at 411.906 kb on - strand, within Psest_0382at 411.932 kb on + strand, within Psest_0382at 411.933 kb on - strand, within Psest_0382at 411.933 kb on - strand, within Psest_0382at 411.933 kb on - strand, within Psest_0382at 411.953 kb on + strand, within Psest_0382at 411.953 kb on + strand, within Psest_0382at 411.953 kb on + strand, within Psest_0382at 411.953 kb on + strand, within Psest_0382at 411.954 kb on - strand, within Psest_0382at 411.954 kb on - strand, within Psest_0382at 411.954 kb on - strand, within Psest_0382at 412.232 kb on + strand, within Psest_0382at 412.233 kb on - strand, within Psest_0382at 412.233 kb on - strand, within Psest_0382at 412.233 kb on - strand, within Psest_0382

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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410,045 + Psest_0380 0.58 +0.8
410,129 + Psest_0380 0.62 +0.2
410,129 + Psest_0380 0.62 -0.0
410,129 + Psest_0380 0.62 -1.6
410,129 + Psest_0380 0.62 +1.2
410,129 + Psest_0380 0.62 +1.4
410,129 + Psest_0380 0.62 -2.0
410,130 - Psest_0380 0.62 +0.4
410,130 - Psest_0380 0.62 +1.2
410,130 - Psest_0380 0.62 +0.2
410,130 - Psest_0380 0.62 +0.1
410,261 + Psest_0380 0.68 +0.1
410,261 + Psest_0380 0.68 -1.4
410,261 + Psest_0380 0.68 +0.8
410,261 + Psest_0380 0.68 +0.9
410,262 - Psest_0380 0.68 +0.2
410,262 - Psest_0380 0.68 +0.6
410,288 + Psest_0380 0.69 +0.5
410,288 + Psest_0380 0.69 -1.0
410,288 + Psest_0380 0.69 +1.3
410,288 + Psest_0380 0.69 +0.2
410,288 + Psest_0380 0.69 -0.4
410,289 - Psest_0380 0.69 +1.0
410,289 - Psest_0380 0.69 -0.4
410,289 - Psest_0380 0.69 +0.2
410,289 - Psest_0380 0.69 +0.2
410,289 - Psest_0380 0.69 +0.8
410,289 - Psest_0380 0.69 -0.8
410,297 + Psest_0380 0.69 +0.6
410,297 + Psest_0380 0.69 +1.4
410,297 + Psest_0380 0.69 +2.8
410,297 + Psest_0380 0.69 +0.7
410,298 - Psest_0380 0.70 -1.6
410,351 + Psest_0380 0.72 +0.1
410,351 + Psest_0380 0.72 +0.5
410,351 + Psest_0380 0.72 +2.8
410,351 + Psest_0380 0.72 +0.9
410,351 + Psest_0380 0.72 -1.0
410,351 + Psest_0380 0.72 +0.8
410,351 + Psest_0380 0.72 -0.1
410,351 + Psest_0380 0.72 -1.1
410,352 - Psest_0380 0.72 +0.2
410,352 - Psest_0380 0.72 +0.5
410,393 + Psest_0380 0.74 +1.7
410,394 - Psest_0380 0.74 -0.4
410,394 - Psest_0380 0.74 +0.1
410,576 + Psest_0380 0.83 -1.4
410,576 + Psest_0380 0.83 -0.4
410,576 + Psest_0380 0.83 -0.2
410,576 + Psest_0380 0.83 +1.1
410,576 + Psest_0380 0.83 +0.4
410,576 + Psest_0380 0.83 -0.1
410,576 + Psest_0380 0.83 -0.4
410,576 + Psest_0380 0.83 -1.0
410,576 + Psest_0380 0.83 +1.2
410,576 + Psest_0380 0.83 +1.2
410,576 + Psest_0380 0.83 +0.2
410,576 + Psest_0380 0.83 +1.2
410,577 - Psest_0380 0.83 -0.5
410,577 - Psest_0380 0.83 +0.0
410,577 - Psest_0380 0.83 +0.8
410,577 - Psest_0380 0.83 +1.2
410,577 - Psest_0380 0.83 -0.1
410,577 - Psest_0380 0.83 +1.0
410,577 - Psest_0380 0.83 +1.5
410,577 - Psest_0380 0.83 -0.3
410,577 - Psest_0380 0.83 -1.0
410,582 + Psest_0380 0.83 +2.2
410,582 + Psest_0380 0.83 +0.1
410,582 + Psest_0380 0.83 +1.2
410,582 + Psest_0380 0.83 +0.0
410,583 - Psest_0380 0.83 +1.8
410,583 - Psest_0380 0.83 +0.8
410,583 - Psest_0380 0.83 +0.8
410,583 - Psest_0380 0.83 +0.3
410,730 - Psest_0380 0.90 -0.3
410,730 - Psest_0380 0.90 +0.9
410,730 - Psest_0380 0.90 -0.5
410,861 + -0.8
410,861 + +0.2
410,861 + +0.5
410,861 + +0.6
410,862 - -0.5
410,862 - -0.2
410,862 - +0.5
410,862 - +0.3
410,864 + +0.2
410,864 + +0.4
410,864 + -0.6
410,864 + +0.0
410,864 + -0.1
410,865 - -0.1
410,865 - +0.1
410,865 - +0.5
410,865 - -0.2
410,865 - -1.4
410,865 - +0.3
410,865 - -1.1
410,865 - -0.9
410,865 - +0.6
410,865 - +0.1
410,865 - -1.6
410,865 - +0.2
410,865 - +0.7
410,933 + +0.8
410,933 + +2.2
410,933 + -0.6
410,934 - -0.1
410,934 - +0.5
411,008 - -0.8
411,008 - +0.5
411,008 - +0.6
411,008 - -0.4
411,008 - -0.7
411,008 - +0.1
411,102 + Psest_0381 0.36 -0.6
411,103 - Psest_0381 0.37 -0.1
411,103 - Psest_0381 0.37 -0.8
411,180 + Psest_0381 0.63 -1.6
411,180 + Psest_0381 0.63 +0.7
411,180 + Psest_0381 0.63 -0.9
411,180 + +0.2
411,180 + Psest_0381 0.63 -0.4
411,180 + Psest_0381 0.63 +0.2
411,180 + Psest_0381 0.63 -0.8
411,180 + Psest_0381 0.63 -0.1
411,180 + Psest_0381 0.63 -0.4
411,180 + Psest_0381 0.63 -0.4
411,180 + Psest_0381 0.63 -1.3
411,180 + Psest_0381 0.63 -0.0
411,180 + Psest_0381 0.63 +1.2
411,181 - Psest_0381 0.63 -1.1
411,181 - Psest_0381 0.63 -0.8
411,181 - Psest_0381 0.63 -0.6
411,181 - Psest_0381 0.63 -0.3
411,181 - Psest_0381 0.63 +0.3
411,181 - Psest_0381 0.63 +0.5
411,181 - Psest_0381 0.63 +0.2
411,181 - Psest_0381 0.63 -0.3
411,665 + Psest_0382 0.25 -0.5
411,665 + Psest_0382 0.25 -0.4
411,665 + Psest_0382 0.25 +1.8
411,665 + Psest_0382 0.25 +0.2
411,665 + Psest_0382 0.25 -0.4
411,665 + Psest_0382 0.25 -0.6
411,665 + Psest_0382 0.25 -0.2
411,665 + Psest_0382 0.25 -0.4
411,666 - Psest_0382 0.25 +0.2
411,666 - Psest_0382 0.25 -1.6
411,666 - Psest_0382 0.25 +0.4
411,666 - Psest_0382 0.25 +2.6
411,666 - Psest_0382 0.25 -1.2
411,695 + Psest_0382 0.27 +0.2
411,695 + Psest_0382 0.27 +1.5
411,695 + Psest_0382 0.27 -1.4
411,695 + Psest_0382 0.27 +2.8
411,695 + Psest_0382 0.27 -0.7
411,695 + Psest_0382 0.27 -0.7
411,695 + Psest_0382 0.27 +0.6
411,695 + Psest_0382 0.27 +0.7
411,695 + Psest_0382 0.27 +2.2
411,695 + Psest_0382 0.27 +0.6
411,695 + Psest_0382 0.27 +1.2
411,695 + Psest_0382 0.27 +0.7
411,695 + Psest_0382 0.27 -1.1
411,695 + Psest_0382 0.27 +0.6
411,695 + Psest_0382 0.27 -1.0
411,695 + Psest_0382 0.27 +0.6
411,695 + Psest_0382 0.27 -0.1
411,695 + Psest_0382 0.27 +1.2
411,695 + Psest_0382 0.27 -0.1
411,695 + Psest_0382 0.27 +1.2
411,695 + Psest_0382 0.27 +0.2
411,695 + Psest_0382 0.27 +1.2
411,695 + Psest_0382 0.27 +2.2
411,695 + Psest_0382 0.27 +0.0
411,695 + Psest_0382 0.27 +2.2
411,695 + Psest_0382 0.27 +2.2
411,695 + Psest_0382 0.27 -0.8
411,695 + Psest_0382 0.27 +0.6
411,696 - Psest_0382 0.27 -0.4
411,696 - Psest_0382 0.27 -0.2
411,696 - Psest_0382 0.27 +0.8
411,696 - Psest_0382 0.27 -0.7
411,696 - Psest_0382 0.27 +0.2
411,696 - Psest_0382 0.27 +0.4
411,696 - Psest_0382 0.27 +0.4
411,696 - Psest_0382 0.27 -0.1
411,696 - Psest_0382 0.27 -0.4
411,696 - Psest_0382 0.27 +1.2
411,696 - Psest_0382 0.27 -0.8
411,696 - Psest_0382 0.27 -0.9
411,696 - Psest_0382 0.27 -0.7
411,696 - Psest_0382 0.27 -0.1
411,696 - Psest_0382 0.27 +0.5
411,905 + Psest_0382 0.40 -2.0
411,905 + Psest_0382 0.40 +0.6
411,905 + Psest_0382 0.40 -0.2
411,905 + Psest_0382 0.40 -1.6
411,905 + Psest_0382 0.40 +2.2
411,905 + +0.2
411,906 - Psest_0382 0.41 -0.4
411,906 - Psest_0382 0.41 +0.5
411,906 - Psest_0382 0.41 +1.2
411,906 - Psest_0382 0.41 -0.8
411,906 - Psest_0382 0.41 -0.8
411,906 - Psest_0382 0.41 -0.5
411,906 - Psest_0382 0.41 +0.2
411,906 - Psest_0382 0.41 -0.3
411,906 - Psest_0382 0.41 -0.8
411,906 - Psest_0382 0.41 +0.5
411,906 - Psest_0382 0.41 -1.8
411,906 - Psest_0382 0.41 +0.8
411,906 - Psest_0382 0.41 -0.3
411,932 + Psest_0382 0.42 -1.4
411,933 - Psest_0382 0.42 -0.5
411,933 - Psest_0382 0.42 +0.4
411,933 - Psest_0382 0.42 -0.4
411,953 + Psest_0382 0.44 -0.8
411,953 + Psest_0382 0.44 +2.8
411,953 + Psest_0382 0.44 +0.9
411,953 + Psest_0382 0.44 -0.4
411,954 - Psest_0382 0.44 +0.3
411,954 - Psest_0382 0.44 -0.6
411,954 - Psest_0382 0.44 +0.2
412,232 + Psest_0382 0.62 +0.2
412,233 - Psest_0382 0.62 +0.3
412,233 - Psest_0382 0.62 +0.4
412,233 - Psest_0382 0.62 -0.1

Or see this region's nucleotide sequence