Experiment: m.b. Cholin acetate 76.57 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3734 and HP15_3735 are separated by 45 nucleotides HP15_3735 and HP15_3736 are separated by 48 nucleotides HP15_3736 and HP15_3737 are separated by 244 nucleotides
HP15_3734: HP15_3734 - conserved hypothetical protein, secreted, at 3,955,172 to 3,955,615
_3734
HP15_3735: HP15_3735 - rhodanese domain protein-like protein, at 3,955,661 to 3,956,224
_3735
HP15_3736: HP15_3736 - protein containing alkyl hydroperoxide reductase/ thiol specific antioxidant/ mal allergen/ peroxiredoxin, C-terminal, at 3,956,273 to 3,956,899
_3736
HP15_3737: HP15_3737 - phospholipase D/transphosphatidylase, at 3,957,144 to 3,958,700
_3737
Position (kb)
3956
3957 Strain fitness (log2 ratio)
-1
0
1 at 3955.330 kb on + strand, within HP15_3734 at 3955.486 kb on + strand, within HP15_3734 at 3955.494 kb on - strand, within HP15_3734 at 3955.510 kb on - strand, within HP15_3734 at 3955.550 kb on - strand, within HP15_3734 at 3955.636 kb on - strand at 3955.648 kb on + strand at 3955.648 kb on - strand at 3955.692 kb on + strand at 3955.698 kb on + strand at 3955.706 kb on - strand at 3955.814 kb on - strand, within HP15_3735 at 3955.902 kb on + strand, within HP15_3735 at 3956.115 kb on - strand, within HP15_3735 at 3956.115 kb on - strand, within HP15_3735 at 3956.128 kb on - strand, within HP15_3735 at 3956.150 kb on - strand, within HP15_3735 at 3956.221 kb on + strand at 3956.229 kb on - strand at 3956.257 kb on - strand at 3956.271 kb on + strand at 3956.311 kb on - strand at 3956.332 kb on - strand at 3956.542 kb on - strand, within HP15_3736 at 3956.565 kb on - strand, within HP15_3736 at 3956.633 kb on + strand, within HP15_3736 at 3956.818 kb on - strand, within HP15_3736 at 3957.051 kb on + strand at 3957.064 kb on - strand at 3957.065 kb on + strand at 3957.072 kb on - strand at 3957.074 kb on - strand at 3957.076 kb on + strand at 3957.185 kb on + strand at 3957.734 kb on + strand, within HP15_3737 at 3957.735 kb on + strand, within HP15_3737 at 3957.742 kb on - strand, within HP15_3737 at 3957.749 kb on + strand, within HP15_3737 at 3957.815 kb on + strand, within HP15_3737 at 3957.818 kb on - strand, within HP15_3737 at 3957.828 kb on - strand, within HP15_3737
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 76.57 mM remove 3,955,330 + HP15_3734 0.36 +0.1 3,955,486 + HP15_3734 0.71 +0.1 3,955,494 - HP15_3734 0.73 -0.2 3,955,510 - HP15_3734 0.76 +0.5 3,955,550 - HP15_3734 0.85 +0.8 3,955,636 - +0.6 3,955,648 + +0.7 3,955,648 - +0.2 3,955,692 + +0.2 3,955,698 + +0.2 3,955,706 - -0.4 3,955,814 - HP15_3735 0.27 +0.3 3,955,902 + HP15_3735 0.43 +0.0 3,956,115 - HP15_3735 0.80 -0.0 3,956,115 - HP15_3735 0.80 +0.6 3,956,128 - HP15_3735 0.83 +0.4 3,956,150 - HP15_3735 0.87 +0.2 3,956,221 + -0.3 3,956,229 - +0.3 3,956,257 - +0.1 3,956,271 + -0.4 3,956,311 - -0.7 3,956,332 - -0.2 3,956,542 - HP15_3736 0.43 -0.9 3,956,565 - HP15_3736 0.47 +0.0 3,956,633 + HP15_3736 0.57 +0.2 3,956,818 - HP15_3736 0.87 -1.1 3,957,051 + -0.2 3,957,064 - +0.1 3,957,065 + +0.6 3,957,072 - +0.2 3,957,074 - -0.1 3,957,076 + +0.0 3,957,185 + -0.0 3,957,734 + HP15_3737 0.38 +1.5 3,957,735 + HP15_3737 0.38 +0.0 3,957,742 - HP15_3737 0.38 +0.6 3,957,749 + HP15_3737 0.39 -0.3 3,957,815 + HP15_3737 0.43 +0.2 3,957,818 - HP15_3737 0.43 +0.2 3,957,828 - HP15_3737 0.44 -0.0
Or see this region's nucleotide sequence