Strain Fitness in Marinobacter adhaerens HP15 around HP15_3628

Experiment: m.b. Cholin acetate 76.57 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3626 and HP15_3627 are separated by 63 nucleotidesHP15_3627 and HP15_3628 are separated by 20 nucleotidesHP15_3628 and HP15_3629 are separated by 70 nucleotidesHP15_3629 and HP15_3630 are separated by 140 nucleotidesHP15_3630 and HP15_3631 overlap by 14 nucleotides HP15_3626: HP15_3626 - betaine aldehyde dehydrogenase, at 3,822,373 to 3,823,842 _3626 HP15_3627: HP15_3627 - transcriptional regulator, TetR family, at 3,823,906 to 3,824,499 _3627 HP15_3628: HP15_3628 - hypothetical protein, at 3,824,520 to 3,824,624 _3628 HP15_3629: HP15_3629 - conserved hypothetical protein, at 3,824,695 to 3,824,907 _3629 HP15_3630: HP15_3630 - hypothetical protein, at 3,825,048 to 3,825,161 _3630 HP15_3631: HP15_3631 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s), at 3,825,148 to 3,827,748 _3631 Position (kb) 3824 3825Strain fitness (log2 ratio) -3 -2 -1 0 1at 3823.569 kb on + strand, within HP15_3626at 3823.577 kb on - strand, within HP15_3626at 3823.577 kb on - strand, within HP15_3626at 3823.577 kb on - strand, within HP15_3626at 3823.577 kb on - strand, within HP15_3626at 3823.649 kb on - strand, within HP15_3626at 3823.649 kb on - strand, within HP15_3626at 3823.730 kb on - strandat 3823.738 kb on + strandat 3823.739 kb on + strandat 3823.821 kb on - strandat 3823.886 kb on - strandat 3823.921 kb on + strandat 3823.921 kb on + strandat 3823.990 kb on + strand, within HP15_3627at 3824.188 kb on - strand, within HP15_3627at 3824.332 kb on - strand, within HP15_3627at 3824.336 kb on - strand, within HP15_3627at 3824.374 kb on + strand, within HP15_3627at 3824.382 kb on - strand, within HP15_3627at 3824.408 kb on + strand, within HP15_3627at 3824.408 kb on - strand, within HP15_3627at 3824.420 kb on + strand, within HP15_3627at 3824.468 kb on - strandat 3824.613 kb on + strand, within HP15_3628at 3824.723 kb on + strand, within HP15_3629at 3824.731 kb on - strand, within HP15_3629at 3824.731 kb on - strand, within HP15_3629at 3824.731 kb on - strand, within HP15_3629at 3824.789 kb on - strand, within HP15_3629at 3824.934 kb on + strandat 3825.006 kb on + strandat 3825.153 kb on + strandat 3825.153 kb on + strandat 3825.158 kb on + strandat 3825.166 kb on - strandat 3825.193 kb on - strandat 3825.193 kb on - strandat 3825.298 kb on - strandat 3825.342 kb on + strandat 3825.350 kb on - strandat 3825.450 kb on + strand, within HP15_3631at 3825.486 kb on + strand, within HP15_3631at 3825.538 kb on + strand, within HP15_3631at 3825.589 kb on + strand, within HP15_3631at 3825.589 kb on + strand, within HP15_3631at 3825.597 kb on - strand, within HP15_3631at 3825.600 kb on + strand, within HP15_3631

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 76.57 mM
remove
3,823,569 + HP15_3626 0.81 -1.2
3,823,577 - HP15_3626 0.82 -3.4
3,823,577 - HP15_3626 0.82 -2.3
3,823,577 - HP15_3626 0.82 -3.0
3,823,577 - HP15_3626 0.82 -2.4
3,823,649 - HP15_3626 0.87 -2.7
3,823,649 - HP15_3626 0.87 -1.8
3,823,730 - -1.9
3,823,738 + -1.5
3,823,739 + -1.7
3,823,821 - -1.9
3,823,886 - -0.6
3,823,921 + -2.4
3,823,921 + -1.1
3,823,990 + HP15_3627 0.14 -0.6
3,824,188 - HP15_3627 0.47 +0.5
3,824,332 - HP15_3627 0.72 +0.6
3,824,336 - HP15_3627 0.72 +0.9
3,824,374 + HP15_3627 0.79 -0.5
3,824,382 - HP15_3627 0.80 +0.2
3,824,408 + HP15_3627 0.85 +0.5
3,824,408 - HP15_3627 0.85 +1.7
3,824,420 + HP15_3627 0.87 -0.7
3,824,468 - +1.0
3,824,613 + HP15_3628 0.89 -0.5
3,824,723 + HP15_3629 0.13 -0.5
3,824,731 - HP15_3629 0.17 -1.1
3,824,731 - HP15_3629 0.17 +0.0
3,824,731 - HP15_3629 0.17 +0.4
3,824,789 - HP15_3629 0.44 -0.1
3,824,934 + -0.1
3,825,006 + +0.2
3,825,153 + +0.4
3,825,153 + +0.5
3,825,158 + +0.3
3,825,166 - -0.1
3,825,193 - +0.5
3,825,193 - -0.3
3,825,298 - +0.2
3,825,342 + +0.4
3,825,350 - +1.2
3,825,450 + HP15_3631 0.12 +0.4
3,825,486 + HP15_3631 0.13 +0.3
3,825,538 + HP15_3631 0.15 +1.0
3,825,589 + HP15_3631 0.17 -0.2
3,825,589 + HP15_3631 0.17 -0.3
3,825,597 - HP15_3631 0.17 +0.2
3,825,600 + HP15_3631 0.17 -0.0

Or see this region's nucleotide sequence