Experiment: m.b. Cholin acetate 76.57 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3618 and HP15_3619 are separated by 190 nucleotides HP15_3619 and HP15_3620 are separated by 259 nucleotides
HP15_3618: HP15_3618 - periplasmic sugar-binding domain protein, at 3,814,027 to 3,815,181
_3618
HP15_3619: HP15_3619 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 3,815,372 to 3,816,958
_3619
HP15_3620: HP15_3620 - conserved hypothetical protein, at 3,817,218 to 3,817,973
_3620
HP15_3621: HP15_3621 - antioxidant, AhpC/Tsa family protein, at 3,817,954 to 3,818,430
_3621
Position (kb)
3815
3816
3817 Strain fitness (log2 ratio)
-1
0
1
2 at 3814.412 kb on + strand, within HP15_3618 at 3814.494 kb on - strand, within HP15_3618 at 3814.504 kb on - strand, within HP15_3618 at 3814.537 kb on + strand, within HP15_3618 at 3814.537 kb on + strand, within HP15_3618 at 3814.537 kb on + strand, within HP15_3618 at 3814.537 kb on + strand, within HP15_3618 at 3814.545 kb on - strand, within HP15_3618 at 3814.545 kb on - strand, within HP15_3618 at 3814.545 kb on - strand, within HP15_3618 at 3814.657 kb on - strand, within HP15_3618 at 3814.676 kb on - strand, within HP15_3618 at 3814.790 kb on + strand, within HP15_3618 at 3814.798 kb on - strand, within HP15_3618 at 3814.798 kb on - strand, within HP15_3618 at 3814.843 kb on - strand, within HP15_3618 at 3814.852 kb on + strand, within HP15_3618 at 3814.859 kb on - strand, within HP15_3618 at 3814.861 kb on + strand, within HP15_3618 at 3814.935 kb on - strand, within HP15_3618 at 3814.942 kb on + strand, within HP15_3618 at 3814.950 kb on - strand, within HP15_3618 at 3814.986 kb on + strand, within HP15_3618 at 3814.987 kb on + strand, within HP15_3618 at 3815.062 kb on + strand, within HP15_3618 at 3815.129 kb on + strand at 3815.174 kb on + strand at 3815.194 kb on + strand at 3815.262 kb on + strand at 3815.270 kb on - strand at 3815.403 kb on - strand at 3815.426 kb on + strand at 3815.588 kb on - strand, within HP15_3619 at 3815.588 kb on - strand, within HP15_3619 at 3815.595 kb on + strand, within HP15_3619 at 3815.615 kb on - strand, within HP15_3619 at 3815.645 kb on + strand, within HP15_3619 at 3815.650 kb on + strand, within HP15_3619 at 3815.678 kb on - strand, within HP15_3619 at 3815.682 kb on + strand, within HP15_3619 at 3815.682 kb on + strand, within HP15_3619 at 3815.738 kb on - strand, within HP15_3619 at 3815.765 kb on - strand, within HP15_3619 at 3815.782 kb on - strand, within HP15_3619 at 3815.812 kb on + strand, within HP15_3619 at 3815.812 kb on + strand, within HP15_3619 at 3815.812 kb on + strand, within HP15_3619 at 3815.820 kb on - strand, within HP15_3619 at 3815.820 kb on - strand, within HP15_3619 at 3815.820 kb on - strand, within HP15_3619 at 3815.839 kb on + strand, within HP15_3619 at 3815.851 kb on + strand, within HP15_3619 at 3815.864 kb on - strand, within HP15_3619 at 3815.895 kb on + strand, within HP15_3619 at 3815.903 kb on - strand, within HP15_3619 at 3815.903 kb on - strand, within HP15_3619 at 3815.937 kb on + strand, within HP15_3619 at 3816.001 kb on + strand, within HP15_3619 at 3816.001 kb on + strand, within HP15_3619 at 3816.009 kb on - strand, within HP15_3619 at 3816.176 kb on - strand, within HP15_3619 at 3816.257 kb on - strand, within HP15_3619 at 3816.267 kb on + strand, within HP15_3619 at 3816.267 kb on + strand, within HP15_3619 at 3816.275 kb on - strand, within HP15_3619 at 3816.292 kb on - strand, within HP15_3619 at 3816.316 kb on + strand, within HP15_3619 at 3816.316 kb on + strand, within HP15_3619 at 3816.412 kb on + strand, within HP15_3619 at 3816.415 kb on - strand, within HP15_3619 at 3816.477 kb on + strand, within HP15_3619 at 3816.553 kb on - strand, within HP15_3619 at 3816.575 kb on + strand, within HP15_3619 at 3816.688 kb on + strand, within HP15_3619 at 3816.855 kb on - strand at 3816.964 kb on + strand at 3817.161 kb on + strand at 3817.229 kb on - strand at 3817.327 kb on + strand, within HP15_3620 at 3817.439 kb on - strand, within HP15_3620 at 3817.456 kb on - strand, within HP15_3620 at 3817.482 kb on - strand, within HP15_3620 at 3817.526 kb on - strand, within HP15_3620 at 3817.666 kb on - strand, within HP15_3620 at 3817.666 kb on - strand, within HP15_3620 at 3817.686 kb on - strand, within HP15_3620 at 3817.691 kb on - strand, within HP15_3620 at 3817.699 kb on + strand, within HP15_3620 at 3817.709 kb on + strand, within HP15_3620 at 3817.717 kb on - strand, within HP15_3620 at 3817.717 kb on - strand, within HP15_3620 at 3817.717 kb on - strand, within HP15_3620 at 3817.743 kb on - strand, within HP15_3620 at 3817.746 kb on - strand, within HP15_3620 at 3817.944 kb on + strand at 3817.952 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 76.57 mM remove 3,814,412 + HP15_3618 0.33 -0.6 3,814,494 - HP15_3618 0.40 -0.2 3,814,504 - HP15_3618 0.41 -1.6 3,814,537 + HP15_3618 0.44 -0.4 3,814,537 + HP15_3618 0.44 -0.5 3,814,537 + HP15_3618 0.44 -0.4 3,814,537 + HP15_3618 0.44 -0.2 3,814,545 - HP15_3618 0.45 +0.8 3,814,545 - HP15_3618 0.45 -0.0 3,814,545 - HP15_3618 0.45 +0.0 3,814,657 - HP15_3618 0.55 -0.3 3,814,676 - HP15_3618 0.56 -0.6 3,814,790 + HP15_3618 0.66 -0.9 3,814,798 - HP15_3618 0.67 +0.0 3,814,798 - HP15_3618 0.67 -0.7 3,814,843 - HP15_3618 0.71 -1.7 3,814,852 + HP15_3618 0.71 +0.7 3,814,859 - HP15_3618 0.72 -0.1 3,814,861 + HP15_3618 0.72 -0.1 3,814,935 - HP15_3618 0.79 -0.5 3,814,942 + HP15_3618 0.79 +0.4 3,814,950 - HP15_3618 0.80 +0.9 3,814,986 + HP15_3618 0.83 +0.5 3,814,987 + HP15_3618 0.83 -0.4 3,815,062 + HP15_3618 0.90 -0.3 3,815,129 + -0.0 3,815,174 + -0.5 3,815,194 + +0.5 3,815,262 + +0.2 3,815,270 - +0.2 3,815,403 - -0.3 3,815,426 + -0.3 3,815,588 - HP15_3619 0.14 -0.2 3,815,588 - HP15_3619 0.14 -0.3 3,815,595 + HP15_3619 0.14 +0.2 3,815,615 - HP15_3619 0.15 +2.0 3,815,645 + HP15_3619 0.17 -1.1 3,815,650 + HP15_3619 0.18 -0.0 3,815,678 - HP15_3619 0.19 -0.7 3,815,682 + HP15_3619 0.20 -0.3 3,815,682 + HP15_3619 0.20 -0.6 3,815,738 - HP15_3619 0.23 -0.0 3,815,765 - HP15_3619 0.25 -0.0 3,815,782 - HP15_3619 0.26 -0.2 3,815,812 + HP15_3619 0.28 -1.2 3,815,812 + HP15_3619 0.28 -0.6 3,815,812 + HP15_3619 0.28 +0.4 3,815,820 - HP15_3619 0.28 -0.3 3,815,820 - HP15_3619 0.28 +0.3 3,815,820 - HP15_3619 0.28 -0.0 3,815,839 + HP15_3619 0.29 -0.1 3,815,851 + HP15_3619 0.30 -0.8 3,815,864 - HP15_3619 0.31 -0.1 3,815,895 + HP15_3619 0.33 -0.4 3,815,903 - HP15_3619 0.33 -0.1 3,815,903 - HP15_3619 0.33 -0.2 3,815,937 + HP15_3619 0.36 -0.4 3,816,001 + HP15_3619 0.40 -0.3 3,816,001 + HP15_3619 0.40 +0.2 3,816,009 - HP15_3619 0.40 -0.3 3,816,176 - HP15_3619 0.51 -0.3 3,816,257 - HP15_3619 0.56 +0.1 3,816,267 + HP15_3619 0.56 +0.3 3,816,267 + HP15_3619 0.56 -0.1 3,816,275 - HP15_3619 0.57 -0.4 3,816,292 - HP15_3619 0.58 -0.4 3,816,316 + HP15_3619 0.59 -0.9 3,816,316 + HP15_3619 0.59 +0.2 3,816,412 + HP15_3619 0.66 -1.0 3,816,415 - HP15_3619 0.66 -0.6 3,816,477 + HP15_3619 0.70 -0.2 3,816,553 - HP15_3619 0.74 -1.3 3,816,575 + HP15_3619 0.76 -0.0 3,816,688 + HP15_3619 0.83 -0.3 3,816,855 - +0.2 3,816,964 + -0.4 3,817,161 + -1.0 3,817,229 - +0.8 3,817,327 + HP15_3620 0.14 -0.0 3,817,439 - HP15_3620 0.29 -0.5 3,817,456 - HP15_3620 0.31 +1.0 3,817,482 - HP15_3620 0.35 -0.5 3,817,526 - HP15_3620 0.41 +0.3 3,817,666 - HP15_3620 0.59 -0.5 3,817,666 - HP15_3620 0.59 -0.9 3,817,686 - HP15_3620 0.62 -0.5 3,817,691 - HP15_3620 0.63 -0.7 3,817,699 + HP15_3620 0.64 -0.7 3,817,709 + HP15_3620 0.65 -0.0 3,817,717 - HP15_3620 0.66 -1.2 3,817,717 - HP15_3620 0.66 +0.3 3,817,717 - HP15_3620 0.66 -0.7 3,817,743 - HP15_3620 0.69 +0.3 3,817,746 - HP15_3620 0.70 -0.7 3,817,944 + +0.1 3,817,952 - +0.3
Or see this region's nucleotide sequence