Experiment: m.b. Cholin acetate 76.57 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3572 and HP15_3573 are separated by 21 nucleotides HP15_3573 and HP15_3574 are separated by 79 nucleotides HP15_3574 and HP15_3575 are separated by 16 nucleotides
HP15_3572: HP15_3572 - aminotransferase, classes I and II, at 3,763,362 to 3,764,567
_3572
HP15_3573: HP15_3573 - hypothetical protein, at 3,764,589 to 3,764,699
_3573
HP15_3574: HP15_3574 - auxin efflux Carrier, at 3,764,779 to 3,765,666
_3574
HP15_3575: HP15_3575 - UbiA prenyltransferase family protein, at 3,765,683 to 3,766,573
_3575
Position (kb)
3764
3765 Strain fitness (log2 ratio)
-2
-1
0
1 at 3763.733 kb on + strand, within HP15_3572 at 3763.741 kb on - strand, within HP15_3572 at 3763.808 kb on + strand, within HP15_3572 at 3763.817 kb on + strand, within HP15_3572 at 3763.836 kb on - strand, within HP15_3572 at 3763.858 kb on + strand, within HP15_3572 at 3763.866 kb on - strand, within HP15_3572 at 3763.901 kb on - strand, within HP15_3572 at 3763.983 kb on + strand, within HP15_3572 at 3764.011 kb on + strand, within HP15_3572 at 3764.036 kb on + strand, within HP15_3572 at 3764.039 kb on - strand, within HP15_3572 at 3764.046 kb on - strand, within HP15_3572 at 3764.046 kb on - strand, within HP15_3572 at 3764.058 kb on - strand, within HP15_3572 at 3764.092 kb on - strand, within HP15_3572 at 3764.107 kb on - strand, within HP15_3572 at 3764.138 kb on - strand, within HP15_3572 at 3764.178 kb on + strand, within HP15_3572 at 3764.186 kb on - strand, within HP15_3572 at 3764.279 kb on - strand, within HP15_3572 at 3764.284 kb on - strand, within HP15_3572 at 3764.357 kb on + strand, within HP15_3572 at 3764.365 kb on - strand, within HP15_3572 at 3764.365 kb on - strand, within HP15_3572 at 3764.386 kb on - strand, within HP15_3572 at 3764.557 kb on + strand at 3764.565 kb on - strand at 3764.575 kb on + strand at 3764.575 kb on + strand at 3764.575 kb on + strand at 3764.583 kb on - strand at 3764.585 kb on + strand at 3764.605 kb on + strand, within HP15_3573 at 3764.628 kb on - strand, within HP15_3573 at 3764.638 kb on - strand, within HP15_3573 at 3764.953 kb on + strand, within HP15_3574 at 3765.281 kb on + strand, within HP15_3574 at 3765.524 kb on + strand, within HP15_3574 at 3765.529 kb on + strand, within HP15_3574 at 3765.655 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 76.57 mM remove 3,763,733 + HP15_3572 0.31 +0.6 3,763,741 - HP15_3572 0.31 +0.5 3,763,808 + HP15_3572 0.37 -0.0 3,763,817 + HP15_3572 0.38 -0.3 3,763,836 - HP15_3572 0.39 -0.3 3,763,858 + HP15_3572 0.41 -0.4 3,763,866 - HP15_3572 0.42 -0.5 3,763,901 - HP15_3572 0.45 -0.0 3,763,983 + HP15_3572 0.51 +0.7 3,764,011 + HP15_3572 0.54 -0.1 3,764,036 + HP15_3572 0.56 +0.3 3,764,039 - HP15_3572 0.56 +0.1 3,764,046 - HP15_3572 0.57 -0.1 3,764,046 - HP15_3572 0.57 -0.3 3,764,058 - HP15_3572 0.58 -0.3 3,764,092 - HP15_3572 0.61 -0.1 3,764,107 - HP15_3572 0.62 +1.7 3,764,138 - HP15_3572 0.64 +0.2 3,764,178 + HP15_3572 0.68 +0.3 3,764,186 - HP15_3572 0.68 +0.1 3,764,279 - HP15_3572 0.76 -0.1 3,764,284 - HP15_3572 0.76 +0.2 3,764,357 + HP15_3572 0.83 +0.6 3,764,365 - HP15_3572 0.83 +0.6 3,764,365 - HP15_3572 0.83 +0.4 3,764,386 - HP15_3572 0.85 +0.7 3,764,557 + -1.0 3,764,565 - -0.7 3,764,575 + +0.1 3,764,575 + +0.6 3,764,575 + -0.4 3,764,583 - -1.8 3,764,585 + -0.0 3,764,605 + HP15_3573 0.14 -0.5 3,764,628 - HP15_3573 0.35 -0.2 3,764,638 - HP15_3573 0.44 -0.7 3,764,953 + HP15_3574 0.20 -0.5 3,765,281 + HP15_3574 0.57 +0.4 3,765,524 + HP15_3574 0.84 -0.2 3,765,529 + HP15_3574 0.84 -0.7 3,765,655 + +0.4
Or see this region's nucleotide sequence