Experiment: m.b. Cholin acetate 76.57 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3389 and HP15_3390 are separated by 194 nucleotides HP15_3390 and HP15_3391 are separated by 12 nucleotides
HP15_3389: HP15_3389 - phosphate ABC transporter periplasmic binding protein, at 3,557,865 to 3,558,908
_3389
HP15_3390: HP15_3390 - thioesterase superfamily protein, at 3,559,103 to 3,559,507
_3390
HP15_3391: HP15_3391 - dihydroorotate dehydrogenase 2, at 3,559,520 to 3,560,512
_3391
HP15_3392: HP15_3392 - pyruvate flavodoxin/ferredoxin oxidoreductase domain protein, at 3,560,505 to 3,564,104
_3392
Position (kb)
3559
3560 Strain fitness (log2 ratio)
-2
-1
0
1 at 3559.045 kb on + strand at 3559.177 kb on + strand, within HP15_3390 at 3559.177 kb on + strand, within HP15_3390 at 3559.177 kb on + strand, within HP15_3390 at 3559.234 kb on - strand, within HP15_3390 at 3559.248 kb on - strand, within HP15_3390 at 3559.398 kb on + strand, within HP15_3390 at 3559.398 kb on + strand, within HP15_3390 at 3559.398 kb on + strand, within HP15_3390 at 3559.406 kb on - strand, within HP15_3390 at 3559.518 kb on + strand at 3559.522 kb on + strand at 3559.640 kb on + strand, within HP15_3391 at 3559.694 kb on - strand, within HP15_3391 at 3559.701 kb on + strand, within HP15_3391 at 3559.701 kb on + strand, within HP15_3391 at 3559.717 kb on - strand, within HP15_3391 at 3559.717 kb on - strand, within HP15_3391 at 3559.810 kb on - strand, within HP15_3391 at 3559.818 kb on - strand, within HP15_3391 at 3559.927 kb on - strand, within HP15_3391 at 3559.996 kb on + strand, within HP15_3391 at 3559.996 kb on + strand, within HP15_3391 at 3560.004 kb on - strand, within HP15_3391 at 3560.004 kb on - strand, within HP15_3391 at 3560.036 kb on + strand, within HP15_3391 at 3560.189 kb on - strand, within HP15_3391 at 3560.227 kb on + strand, within HP15_3391 at 3560.235 kb on - strand, within HP15_3391 at 3560.345 kb on - strand, within HP15_3391 at 3560.389 kb on - strand, within HP15_3391 at 3560.439 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 76.57 mM remove 3,559,045 + -1.2 3,559,177 + HP15_3390 0.18 -2.1 3,559,177 + HP15_3390 0.18 -2.4 3,559,177 + HP15_3390 0.18 -2.5 3,559,234 - HP15_3390 0.32 -2.6 3,559,248 - HP15_3390 0.36 -2.1 3,559,398 + HP15_3390 0.73 -2.2 3,559,398 + HP15_3390 0.73 -1.1 3,559,398 + HP15_3390 0.73 -2.3 3,559,406 - HP15_3390 0.75 -1.9 3,559,518 + +0.3 3,559,522 + -0.9 3,559,640 + HP15_3391 0.12 +0.7 3,559,694 - HP15_3391 0.18 +0.2 3,559,701 + HP15_3391 0.18 -0.3 3,559,701 + HP15_3391 0.18 +0.5 3,559,717 - HP15_3391 0.20 -0.2 3,559,717 - HP15_3391 0.20 -0.3 3,559,810 - HP15_3391 0.29 -0.6 3,559,818 - HP15_3391 0.30 -0.2 3,559,927 - HP15_3391 0.41 +0.3 3,559,996 + HP15_3391 0.48 -0.0 3,559,996 + HP15_3391 0.48 +0.2 3,560,004 - HP15_3391 0.49 +0.1 3,560,004 - HP15_3391 0.49 -0.1 3,560,036 + HP15_3391 0.52 +0.2 3,560,189 - HP15_3391 0.67 -0.2 3,560,227 + HP15_3391 0.71 +0.0 3,560,235 - HP15_3391 0.72 +0.1 3,560,345 - HP15_3391 0.83 -0.0 3,560,389 - HP15_3391 0.88 -0.0 3,560,439 - +0.5
Or see this region's nucleotide sequence